39s ribosomal protein mitochondrial, maker-scaffold1518_size37722-snap-gene-0.13 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Match: EMLSAG00000003863 (supercontig:LSalAtl2s:LSalAtl2s209:636122:636750:-1 gene:EMLSAG00000003863 transcript:EMLSAT00000003863 description:"maker-LSalAtl2s209-augustus-gene-5.13") HSP 1 Score: 109.383 bits (272), Expect = 3.260e-31 Identity = 59/127 (46.46%), Postives = 76/127 (59.84%), Query Frame = 0 Query: 32 LGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNVVSRTR-NLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKLTE 157 LGGVRGKK ++SGSTKN G P GKKRG KV+DGQRV G+ L H+ + PG N +R ++ AT HGRVM T E + +D + D ++R +H+IPDEQHQYFKL + Sbjct: 42 LGGVRGKKKQSSGSTKNQCGFPVGKKRGAKVYDGQRVPYGSXLVNQIHMTVFPGLNTRFGSRCSIMATHHGRVMFTVERTN----LDFENDSYVQRYFSEDLKGRNMFRTTVHVIPDEQHQYFKLLD 164
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|20139806|sp|Q9P0M9.1|RM27_HUMAN (RecName: Full=39S ribosomal protein L27, mitochondrial; Short=L27mt; Short=MRP-L27; AltName: Full=Mitochondrial large ribosomal subunit protein bL27m; Flags: Precursor) HSP 1 Score: 60.4622 bits (145), Expect = 4.202e-11 Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 0 Query: 24 LEPGLMTALGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDP----GEHVDLLMSPTRHPFHKYDADKGRV-YRLHLHIIPDEQHQYFKL 155 L P TAL VR K+ GS+KN+ G +G+++G+K +G V G +A RH PG +V V + + L+A G V T EV P E VDL+ TR P KG V Y+ +H++P + FKL Sbjct: 18 LSPTPATALA-VRYASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRYTKEVYVPHPRNTEAVDLI---TRLP-------KGAVLYKTFVHVVPAKPEGTFKL 144
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|108860946|sp|Q32PC3.1|RM27_BOVIN (RecName: Full=39S ribosomal protein L27, mitochondrial; Short=L27mt; Short=MRP-L27; Flags: Precursor) HSP 1 Score: 56.225 bits (134), Expect = 1.794e-9 Identity = 46/137 (33.58%), Postives = 65/137 (47.45%), Query Frame = 0 Query: 24 LEPGLMTALGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDP----GEHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKL 155 L P AL VR K GS+KN+ G GK+ G++ +G V G LA RH PG +V + + + L+A G V T EV P E VDL+ TR P + +Y+ +H++P + FKL Sbjct: 18 LSPPQAAALA-VRYASKKTGGSSKNLGGKSPGKRFGIRKMEGHYVHAGNILATQRHFRWHPGAHVGLGKNKCLYALEEGVVRYTKEVYVPSPSNSEAVDLV---TRLP------EGAVLYKTFVHVVPAKPEGTFKL 144
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|20139649|sp|Q99N92.1|RM27_MOUSE (RecName: Full=39S ribosomal protein L27, mitochondrial; Short=L27mt; Short=MRP-L27; Flags: Precursor) HSP 1 Score: 53.1434 bits (126), Expect = 2.898e-8 Identity = 47/142 (33.10%), Postives = 64/142 (45.07%), Query Frame = 0 Query: 24 LEPGLMTALGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPG----EHVDLLMSPTRHPFHKYDADKGRV-YRLHLHIIPDEQHQYFKLTEQV 159 L P TAL VR K GS+KN+ G GK G+K +G V G L R PG +V + R + L+A G V T +V P E VDL+ S KG V Y+ +H++P + FKL + + Sbjct: 18 LSPTAPTALA-VRHASKKTGGSSKNLGGKSRGKHYGIKKMEGHYVHAGNILGTQRQFRWHPGAHVGLGRNKCLYALEEGIVRYTKDVYVPNPKNTEAVDLVTS----------LPKGAVLYKTFVHVVPAKPEGTFKLVDML 148
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|290561557|gb|ADD38179.1| (39S ribosomal protein L27, mitochondrial [Lepeophtheirus salmonis]) HSP 1 Score: 108.227 bits (269), Expect = 6.373e-27 Identity = 59/127 (46.46%), Postives = 76/127 (59.84%), Query Frame = 0 Query: 32 LGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNVVSRTR-NLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKLTE 157 LGGVRGKK ++SGSTKN G P GKKRG KV+DGQRV G+ L H+ + PG N +R ++ AT HGRVM T E + +D + D ++R +H+IPDEQHQYFKL + Sbjct: 42 LGGVRGKKKQSSGSTKNQCGFPVGKKRGAKVYDGQRVPYGSVLVNQIHMTVFPGLNTRFGSRCSIMATHHGRVMFTVERTN----LDFENDSYVQRYFSEDLKGRNMFRTTVHVIPDEQHQYFKLLD 164
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1325334573|ref|XP_023349105.1| (uncharacterized protein LOC111717878 [Eurytemora affinis]) HSP 1 Score: 101.293 bits (251), Expect = 2.272e-24 Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 0 Query: 35 VRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNVVSRTR-NLFATCHGRVMITTEVCDPGEHVDLLMSPTR----HPFHKYDADKGRVYRLHLHIIPDEQHQYFKLTEQV 159 VR KA ST+N + GK+RG+KV+DGQR+ G + L ILPGWN V N+ A HGRV+ITTE P + + P R P H + +Y+ H+HI+PDEQHQYFKLTEQ+ Sbjct: 27 VRDASKKAGSSTRNRCRNTPGKRRGIKVYDGQRIPSGKIVVSQYRLQILPGWNTVMLPNCNIMALTHGRVIITTEKVQPKQE-EYEKLPARLGKVMPDHLLQEN---IYKPHIHILPDEQHQYFKLTEQI 152
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|924552836|gb|ALC38111.1| (mRpL27 [Drosophila busckii]) HSP 1 Score: 74.7146 bits (182), Expect = 3.886e-14 Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = 0 Query: 32 LGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKLTEQV 159 L +R K GST+N GHP K RG +V DG V GT LA PG NV R LFA HG+V+IT E DP + R+ + D +Y+ ++IP++QHQ F+L E+V Sbjct: 16 LTTIRNASKKTGGSTRNKKGHPRPKHRGWRVLDGHNVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKVVITCETIDPNWDHSWVQ---RNYAGRQDQT---IYKKFFNVIPEKQHQRFRLVEEV 138
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1060151646|ref|XP_017849788.1| (PREDICTED: 39S ribosomal protein L27, mitochondrial [Drosophila busckii]) HSP 1 Score: 74.7146 bits (182), Expect = 4.421e-14 Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = 0 Query: 32 LGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKLTEQV 159 L +R K GST+N GHP K RG +V DG V GT LA PG NV R LFA HG+V+IT E DP + R+ + D +Y+ ++IP++QHQ F+L E+V Sbjct: 21 LTTIRNASKKTGGSTRNKKGHPRPKHRGWRVLDGHNVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKVVITCETIDPNWDHSWVQ---RNYAGRQDQT---IYKKFFNVIPEKQHQRFRLVEEV 143
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1068393600|ref|XP_018045678.1| (PREDICTED: 50S ribosomal protein L27 isoform X2 [Atta colombica]) HSP 1 Score: 74.3294 bits (181), Expect = 7.491e-14 Identity = 57/150 (38.00%), Postives = 77/150 (51.33%), Query Frame = 0 Query: 17 SPAASLGLEPGLMTALG---GVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDA---DKGRVYRLHLHIIPDEQHQYFKLTEQV 159 S SLGL+ T + VR K+S ST N +GHP K RG K+ DG G L R+L PG NV +SR R+LFA G+V+IT E VDL +HP+ K + + +Y+ H +IIP+ QH FKL + + Sbjct: 5 SQLVSLGLQNARQTLVSLKVCVRYASKKSSTSTCNKSGHPRPKHRGWKIQDGGYTYAGRLLVTQRNLRFHPGLNVGLSRDRSLFALEPGKVVITC------EKVDLNW---KHPWVKLNYAGRENQVIYKKHFNIIPEPQHNRFKLIDTI 145
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1062661160|ref|XP_017954456.1| (PREDICTED: 39S ribosomal protein L27, mitochondrial [Drosophila navojoa]) HSP 1 Score: 73.1738 bits (178), Expect = 1.992e-13 Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = 0 Query: 35 VRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPG-EHVDLLMSPTRHPFHKYDADKGR-VYRLHLHIIPDEQHQYFKLTEQV 159 +R K GST+N GHP K RG +V DG V GT LA PG NV + R LFA HG+V++T E DP +H + + Y +G+ +Y+ ++IP+EQHQ F+L +++ Sbjct: 24 IRNASKKTGGSTRNKKGHPRPKHRGWRVQDGHYVSHGTILATQLTTRFHPGLNVGLGRNGTLFAIEHGKVVVTCEPIDPNWDHTWIQRN--------YAGRQGQTIYKKFFNVIPEEQHQRFRLVDEI 143
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1070167857|ref|XP_018344968.1| (PREDICTED: 50S ribosomal protein L27 [Trachymyrmex septentrionalis] >gi|1070167863|ref|XP_018344969.1| PREDICTED: 50S ribosomal protein L27 [Trachymyrmex septentrionalis]) HSP 1 Score: 72.7886 bits (177), Expect = 3.046e-13 Identity = 59/154 (38.31%), Postives = 78/154 (50.65%), Query Frame = 0 Query: 17 SPAASLGLEPGLMTALGG-------VRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYD-ADKGR--VYRLHLHIIPDEQHQYFKLTEQV 159 S SLGL+ T + VR KAS ST N +GHP K RG K+ DG G L R L PG NV +SR +LFA G+V++T E VDL + HP+ K + AD+ +Y+ H +IIPD QH FKL +++ Sbjct: 5 SQLVSLGLQNARQTLVFCNNLVKVCVRHASKKASTSTSNKSGHPRPKHRGWKIQDGGYTYSGRLLVTQRKLRFHPGLNVGLSRDGSLFAIEPGKVVVTC------EKVDLNWN---HPWVKLNYADRKNQVIYKKHFNIIPDSQHNRFKLIDRI 149
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1068393597|ref|XP_018045677.1| (PREDICTED: 50S ribosomal protein L27 isoform X1 [Atta colombica]) HSP 1 Score: 72.4034 bits (176), Expect = 3.896e-13 Identity = 57/155 (36.77%), Postives = 77/155 (49.68%), Query Frame = 0 Query: 17 SPAASLGLEPGLMTALGG--------VRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDA---DKGRVYRLHLHIIPDEQHQYFKLTEQV 159 S SLGL+ T + VR K+S ST N +GHP K RG K+ DG G L R+L PG NV +SR R+LFA G+V+IT E VDL +HP+ K + + +Y+ H +IIP+ QH FKL + + Sbjct: 5 SQLVSLGLQNARQTLVSCNNNLVKVCVRYASKKSSTSTCNKSGHPRPKHRGWKIQDGGYTYAGRLLVTQRNLRFHPGLNVGLSRDRSLFALEPGKVVITC------EKVDLNW---KHPWVKLNYAGRENQVIYKKHFNIIPEPQHNRFKLIDTI 150
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1009418831|gb|KYN37478.1| (39S ribosomal protein L27, mitochondrial, partial [Trachymyrmex septentrionalis]) HSP 1 Score: 71.633 bits (174), Expect = 4.023e-13 Identity = 53/129 (41.09%), Postives = 70/129 (54.26%), Query Frame = 0 Query: 35 VRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYD-ADKGR--VYRLHLHIIPDEQHQYFKLTEQV 159 VR KAS ST N +GHP K RG K+ DG G L R L PG NV +SR +LFA G+V++T E VDL + HP+ K + AD+ +Y+ H +IIPD QH FKL +++ Sbjct: 9 VRHASKKASTSTSNKSGHPRPKHRGWKIQDGGYTYSGRLLVTQRKLRFHPGLNVGLSRDGSLFAIEPGKVVVTC------EKVDLNWN---HPWVKLNYADRKNQVIYKKHFNIIPDSQHNRFKLIDRI 128
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|195052580|ref|XP_001993327.1| (GH13746 [Drosophila grimshawi] >gi|193900386|gb|EDV99252.1| GH13746 [Drosophila grimshawi]) HSP 1 Score: 72.0182 bits (175), Expect = 4.391e-13 Identity = 47/130 (36.15%), Postives = 63/130 (48.46%), Query Frame = 0 Query: 32 LGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDADKGR-VYRLHLHIIPDEQHQYFKLTEQV 159 L +R K GST+N GHP K RG +V DG V GT LA PG NV R LFA HGRV+I+ E DP + Y + + +Y+ ++IP+ QHQ F+L E++ Sbjct: 16 LTTIRNASKKTGGSTRNKKGHPRPKHRGWRVLDGHYVSHGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGRVIISCEPIDPNWDHTWIQR-------NYAGRQDQIIYKKFFNVIPETQHQLFRLVEEI 138 The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 3
BLAST of 39s ribosomal protein mitochondrial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1518_size37722:1512..2662+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1518_size37722-snap-gene-0.13 ID=maker-scaffold1518_size37722-snap-gene-0.13|Name=39s ribosomal protein mitochondrial|organism=Tigriopus kingsejongensis|type=gene|length=1151bp|location=Sequence derived from alignment at scaffold1518_size37722:1512..2662+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '39s ribosomal protein mitochondrial' has the following synonyms
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