39s ribosomal protein mitochondrial, maker-scaffold1518_size37722-snap-gene-0.13 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Match: EMLSAG00000003863 (supercontig:LSalAtl2s:LSalAtl2s209:636122:636750:-1 gene:EMLSAG00000003863 transcript:EMLSAT00000003863 description:"maker-LSalAtl2s209-augustus-gene-5.13") HSP 1 Score: 109.383 bits (272), Expect = 3.260e-31 Identity = 59/127 (46.46%), Postives = 76/127 (59.84%), Query Frame = 0 Query: 32 LGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNVVSRTR-NLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKLTE 157 LGGVRGKK ++SGSTKN G P GKKRG KV+DGQRV G+ L H+ + PG N +R ++ AT HGRVM T E + +D + D ++R +H+IPDEQHQYFKL + Sbjct: 42 LGGVRGKKKQSSGSTKNQCGFPVGKKRGAKVYDGQRVPYGSXLVNQIHMTVFPGLNTRFGSRCSIMATHHGRVMFTVERTN----LDFENDSYVQRYFSEDLKGRNMFRTTVHVIPDEQHQYFKLLD 164
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|20139806|sp|Q9P0M9.1|RM27_HUMAN (RecName: Full=39S ribosomal protein L27, mitochondrial; Short=L27mt; Short=MRP-L27; AltName: Full=Mitochondrial large ribosomal subunit protein bL27m; Flags: Precursor) HSP 1 Score: 60.4622 bits (145), Expect = 4.202e-11 Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 0 Query: 24 LEPGLMTALGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDP----GEHVDLLMSPTRHPFHKYDADKGRV-YRLHLHIIPDEQHQYFKL 155 L P TAL VR K+ GS+KN+ G +G+++G+K +G V G +A RH PG +V V + + L+A G V T EV P E VDL+ TR P KG V Y+ +H++P + FKL Sbjct: 18 LSPTPATALA-VRYASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRYTKEVYVPHPRNTEAVDLI---TRLP-------KGAVLYKTFVHVVPAKPEGTFKL 144
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|108860946|sp|Q32PC3.1|RM27_BOVIN (RecName: Full=39S ribosomal protein L27, mitochondrial; Short=L27mt; Short=MRP-L27; Flags: Precursor) HSP 1 Score: 56.225 bits (134), Expect = 1.794e-9 Identity = 46/137 (33.58%), Postives = 65/137 (47.45%), Query Frame = 0 Query: 24 LEPGLMTALGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDP----GEHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKL 155 L P AL VR K GS+KN+ G GK+ G++ +G V G LA RH PG +V + + + L+A G V T EV P E VDL+ TR P + +Y+ +H++P + FKL Sbjct: 18 LSPPQAAALA-VRYASKKTGGSSKNLGGKSPGKRFGIRKMEGHYVHAGNILATQRHFRWHPGAHVGLGKNKCLYALEEGVVRYTKEVYVPSPSNSEAVDLV---TRLP------EGAVLYKTFVHVVPAKPEGTFKL 144
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|20139649|sp|Q99N92.1|RM27_MOUSE (RecName: Full=39S ribosomal protein L27, mitochondrial; Short=L27mt; Short=MRP-L27; Flags: Precursor) HSP 1 Score: 53.1434 bits (126), Expect = 2.898e-8 Identity = 47/142 (33.10%), Postives = 64/142 (45.07%), Query Frame = 0 Query: 24 LEPGLMTALGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPG----EHVDLLMSPTRHPFHKYDADKGRV-YRLHLHIIPDEQHQYFKLTEQV 159 L P TAL VR K GS+KN+ G GK G+K +G V G L R PG +V + R + L+A G V T +V P E VDL+ S KG V Y+ +H++P + FKL + + Sbjct: 18 LSPTAPTALA-VRHASKKTGGSSKNLGGKSRGKHYGIKKMEGHYVHAGNILGTQRQFRWHPGAHVGLGRNKCLYALEEGIVRYTKDVYVPNPKNTEAVDLVTS----------LPKGAVLYKTFVHVVPAKPEGTFKLVDML 148
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1285008925|ref|XP_023016409.1| (uncharacterized protein LOC111505774 [Leptinotarsa decemlineata]) HSP 1 Score: 71.633 bits (174), Expect = 5.775e-13 Identity = 51/133 (38.35%), Postives = 67/133 (50.38%), Query Frame = 0 Query: 28 LMTALGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKLTEQV 159 + LG VR KA GST+N + K RG KV DG V G L + RHL PG NV + R LFA HGRV +T E +P + R H+ D ++ + +IIP+ QHQ FKL +Q+ Sbjct: 16 IKVQLGTVRLASKKAKGSTRNTSPKVRPKHRGWKVQDGHYVHPGHILVLQRHLRFHPGLNVGLGRNGTLFALTHGRVAVTCEKTNPDWTHTWVQ---RCHGHRKGTD---FFKKYFNIIPEPQHQNFKLVDQI 142
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1009360209|gb|KYM85323.1| (39S ribosomal protein L27, mitochondrial, partial [Atta colombica]) HSP 1 Score: 71.2478 bits (173), Expect = 7.478e-13 Identity = 51/129 (39.53%), Postives = 69/129 (53.49%), Query Frame = 0 Query: 35 VRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDA---DKGRVYRLHLHIIPDEQHQYFKLTEQV 159 VR K+S ST N +GHP K RG K+ DG G L R+L PG NV +SR R+LFA G+V+IT E VDL +HP+ K + + +Y+ H +IIP+ QH FKL + + Sbjct: 9 VRYASKKSSTSTCNKSGHPRPKHRGWKIQDGGYTYAGRLLVTQRNLRFHPGLNVGLSRDRSLFALEPGKVVITC------EKVDLNW---KHPWVKLNYAGRENQVIYKKHFNIIPEPQHNRFKLIDTI 128
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|751472383|ref|XP_011191501.1| (PREDICTED: 39S ribosomal protein L27, mitochondrial [Zeugodacus cucurbitae]) HSP 1 Score: 71.633 bits (174), Expect = 7.631e-13 Identity = 51/141 (36.17%), Postives = 68/141 (48.23%), Query Frame = 0 Query: 21 SLGLEPGLMTALGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDADKGR-VYRLHLHIIPDEQHQYFKLTEQV 159 SL + L+T +R K GST+N GHP K RG +V DG V GT LA PG NV R L+A HGRV +T E DP + Y +G+ +Y+ ++IP+ QHQ F+L E+V Sbjct: 13 SLKADQPLITT---IRNASKKTGGSTRNKKGHPRPKHRGWRVQDGHWVSQGTLLATQLTTRFHPGMNVGFGRNGTLYAMEHGRVYVTCEQLDPDWDHTWVQR-------NYAGREGQTIYKKFFNVIPEPQHQRFRLIEEV 143
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1000735491|ref|XP_015590211.1| (PREDICTED: 39S ribosomal protein L27, mitochondrial [Cephus cinctus]) HSP 1 Score: 71.2478 bits (173), Expect = 1.014e-12 Identity = 49/127 (38.58%), Postives = 61/127 (48.03%), Query Frame = 0 Query: 35 VRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDADKG-RVYRLHLHIIPDEQHQYFKLTEQV 159 VR K GST+N GH K RG +V DG VQ GT LA PG NV R LFA G+VM+T E DP + Y+ G ++Y+ H ++IP QH FKL E+V Sbjct: 30 VRNASKKTGGSTRNKGGHARPKHRGWRVQDGHFVQAGTILATQLTTRFHPGLNVGWGRNGTLFALEAGKVMVTCEQIDPKWENSWVQ-------RNYNDRMGQKIYKKHFNVIPAPQHHVFKLIEKV 149
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1236459414|ref|XP_022224130.1| (39S ribosomal protein L27, mitochondrial [Drosophila obscura]) HSP 1 Score: 71.2478 bits (173), Expect = 1.017e-12 Identity = 47/127 (37.01%), Postives = 65/127 (51.18%), Query Frame = 0 Query: 35 VRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPG-EHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKLTEQV 159 +R K GST+N GHP K RG +V DG V GT LA PG NV R LFA HG+V +T E DP +H + R+ + D +Y+ ++IP++QHQ F+L E++ Sbjct: 24 IRNASKKTGGSTRNKKGHPRPKHRGWRVMDGHIVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKVYVTCETIDPNWDHTWV----QRNYAGRQDQT---IYKKFFNVIPEKQHQRFRLVEEI 143
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|751227965|ref|XP_011167369.1| (PREDICTED: 39S ribosomal protein L27, mitochondrial [Solenopsis invicta]) HSP 1 Score: 71.2478 bits (173), Expect = 1.083e-12 Identity = 48/127 (37.80%), Postives = 62/127 (48.82%), Query Frame = 0 Query: 35 VRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPG-EHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKLTEQV 159 VR K+SGST N GHP K RG K DG RV G L R PG NV R +LFA G+V++T E DP EH + H + +Y+ H ++IP QH FKL +++ Sbjct: 32 VRHASKKSSGSTSNKGGHPRPKHRGTKTQDGARVHAGRLLVTQRTTRFHPGLNVGFGRDGSLFAIESGKVVVTCEKIDPNWEHTWIQR-------HYAGRENQVIYKKHFNVIPIPQHNRFKLIDKI 151
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|195437771|ref|XP_002066813.1| (uncharacterized protein LOC6644202 [Drosophila willistoni] >gi|194162898|gb|EDW77799.1| uncharacterized protein Dwil_GK24353 [Drosophila willistoni]) HSP 1 Score: 71.2478 bits (173), Expect = 1.096e-12 Identity = 48/130 (36.92%), Postives = 67/130 (51.54%), Query Frame = 0 Query: 32 LGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPG-EHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKLTEQV 159 L +R K GST+N GHP K RG +V DG V GT LA PG NV R LFA HGRV+++ E DP +H + R+ + D +Y+ ++IP++QHQ F+L E++ Sbjct: 21 LTTIRNASKKTGGSTRNKKGHPRPKHRGWRVLDGHYVSHGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGRVIMSCEPIDPNWDHTWV----QRNYAGRQDQT---IYKKFFNVIPEKQHQRFRLVEEI 143
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|498943421|ref|XP_004521875.1| (39S ribosomal protein L27, mitochondrial [Ceratitis capitata]) HSP 1 Score: 70.8626 bits (172), Expect = 1.557e-12 Identity = 50/141 (35.46%), Postives = 68/141 (48.23%), Query Frame = 0 Query: 21 SLGLEPGLMTALGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDADKGR-VYRLHLHIIPDEQHQYFKLTEQV 159 SL + L+T +R K GST+N GHP K RG +V DG V GT LA PG NV R L+A HGRV +T E DP + Y +G+ +Y+ ++IP+ QHQ F+L ++V Sbjct: 13 SLKADQPLITT---IRNASKKTGGSTRNKKGHPRPKHRGWRVQDGHWVSQGTLLATQLTTRFHPGMNVGFGRNGTLYAMEHGRVYVTCEQLDPNWDHTWVQR-------NYAGREGQTIYKKFFNVIPEPQHQRFRLKDEV 143
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|195386898|ref|XP_002052141.1| (uncharacterized protein Dvir_GJ17391 [Drosophila virilis] >gi|194148598|gb|EDW64296.1| uncharacterized protein Dvir_GJ17391 [Drosophila virilis]) HSP 1 Score: 70.4774 bits (171), Expect = 1.625e-12 Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 0 Query: 28 LMTALGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPG-EHVDLLMSPTRHPFHKYDADKGRVYRLHLHIIPDEQHQYFKLTEQV 159 LMT +R K GST+N GHP K RG +V DG V GT LA PG NV R LFA HGRV+++ E +P +H + R+ + D +Y+ ++IP++QHQ F+L E++ Sbjct: 20 LMTT---IRNASKKTGGSTRNKKGHPRPKHRGWRVLDGHYVSQGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGRVIVSCEPIEPNWDHTWV----QRNYAGRQDQT---IYKKFFNVIPEKQHQRFRLVEEI 143
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1048004673|ref|XP_017486217.1| (PREDICTED: 39S ribosomal protein L27, mitochondrial [Rhagoletis zephyria]) HSP 1 Score: 70.4774 bits (171), Expect = 1.732e-12 Identity = 51/141 (36.17%), Postives = 66/141 (46.81%), Query Frame = 0 Query: 21 SLGLEPGLMTALGGVRGKKIKASGSTKNVAGHPTGKKRGVKVFDGQRVQIGTRLAMLRHLDILPGWNV-VSRTRNLFATCHGRVMITTEVCDPGEHVDLLMSPTRHPFHKYDADKGR-VYRLHLHIIPDEQHQYFKLTEQV 159 SL G T L +R K GST+N GHP K RG +V DG V GT LA PG NV R L+A HGRV +T E DP + Y +G+ +Y+ ++I + QHQ F+L E+V Sbjct: 10 SLQSLKGDQTLLTTIRNASKKTGGSTRNKKGHPRPKHRGWRVQDGHWVSQGTLLATQLTTRFHPGMNVGFGRNGTLYAMEHGRVYVTCERLDPNWDHTWVQR-------NYAGREGQTIYKKFFNVITEPQHQRFRLIEEV 143 The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 3
BLAST of 39s ribosomal protein mitochondrial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1518_size37722:1512..2662+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1518_size37722-snap-gene-0.13 ID=maker-scaffold1518_size37722-snap-gene-0.13|Name=39s ribosomal protein mitochondrial|organism=Tigriopus kingsejongensis|type=gene|length=1151bp|location=Sequence derived from alignment at scaffold1518_size37722:1512..2662+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '39s ribosomal protein mitochondrial' has the following synonyms
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