transcription elongation factor s-ii, maker-scaffold158_size296719-snap-gene-1.16 (gene) Tigriopus kingsejongensis

Overview


Name	transcription elongation factor s-ii
Unique Name	maker-scaffold158_size296719-snap-gene-1.16
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of transcription elongation factor s-ii vs. L. salmonis genes
Match: EMLSAG00000007265 (supercontig:LSalAtl2s:LSalAtl2s408:619046:623457:1 gene:EMLSAG00000007265 transcript:EMLSAT00000007265 description:"maker-LSalAtl2s408-augustus-gene-5.32")

HSP 1 Score: 372.474 bits (955), Expect = 8.672e-131
Identity = 188/302 (62.25%), Postives = 233/302 (77.15%), Query Frame = 0

Query:    1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQ-ATGDEVRLRCREMLSKSLTGEG-ELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            +E+EV ++R QLEK          D S ALDLL+ L RL++NL ILT+TR+GMTVN LRK+S+++EV+T+AKSLIKTWKK+VPE +       DK KKD    +K  K+  S+E  +A+   L++  P K   AT D+VRLRCREML+ +L G G +LP+G+ ++ EE+AD IE+A+F  FK T  +YKNQIRSRVFNLKDKKNPALRENVLTG+I P KF+ MTA+EMAS +VKKQR  F+KQGIDASQLA+ +GT TDLL+CGKC KRNCTYNQIQTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    3 VEEEVTDIRNQLEKIVSGS----GDGSQALDLLKVLGRLKINLTILTSTRVGMTVNNLRKTSKEEEVVTVAKSLIKTWKKFVPENS-------DKKKKDSEEESK--KSPHSKEESNAKSNGLSKSFPQKTNIATTDDVRLRCREMLTNALKGIGSDLPDGICKSPEELADLIEEAIFSNFKSTSAKYKNQIRSRVFNLKDKKNPALRENVLTGIIEPSKFAVMTADEMASNEVKKQRADFVKQGIDASQLAQIQGTKTDLLKCGKCLKRNCTYNQIQTRSADEPMTTFVLCNECGNRWKFC 291

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BLAST of transcription elongation factor s-ii vs. L. salmonis genes
Match: EMLSAG00000004399 (supercontig:LSalAtl2s:LSalAtl2s2314:6290:6873:-1 gene:EMLSAG00000004399 transcript:EMLSAT00000004399 description:"augustus_masked-LSalAtl2s2314-processed-gene-0.0")

HSP 1 Score: 95.5153 bits (236), Expect = 1.755e-24
Identity = 69/201 (34.33%), Postives = 92/201 (45.77%), Query Frame = 0

Query:   53 MTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGG-----SAQDEFLTQGLPCKAQ-ATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDAS 247
            M  N LRK+S++ EV+T+AKSLIKTWKK   +T     K                              +A+   L++ LP K   AT D+VRL+C EML+                                    ++Y            D K PALRENVL G+I P KF+ MTA+EM S++VKK+R  ++KQGIDAS
Sbjct:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKCQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT------------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGIDAS 153

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BLAST of transcription elongation factor s-ii vs. L. salmonis genes
Match: EMLSAG00000008844 (supercontig:LSalAtl2s:LSalAtl2s551:168310:177216:1 gene:EMLSAG00000008844 transcript:EMLSAT00000008844 description:"maker-LSalAtl2s551-augustus-gene-1.18")

HSP 1 Score: 55.4546 bits (132), Expect = 9.532e-9
Identity = 30/98 (30.61%), Postives = 59/98 (60.20%), Query Frame = 0

Query:  167 IADYIEDALFKKF-KDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCG 263
            + + IE++LF+ + KD   +YK + RS VFN+KD+KN      +++  I  +   ++TAEEMA++++++ R+  +K  I+     K +    D+++ G
Sbjct:  642 LVEEIEESLFRYYNKDVTSKYKAKYRSLVFNIKDEKNTGFFRKIVSRKINSKDLVSLTAEEMANKELQRWREKELKNDIE-----KIKSHELDMIKLG 734

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BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|135660|sp|P20232.1|TFS2_DROME (RecName: Full=Transcription elongation factor S-II; AltName: Full=RNA polymerase II elongation factor DMS-II; AltName: Full=TFIIS)

HSP 1 Score: 280.796 bits (717), Expect = 7.923e-93
Identity = 152/324 (46.91%), Postives = 203/324 (62.65%), Query Frame = 0

Query:    1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPE---TNAGGDKAKD---------------------KTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            +E+EV  ++K++ K   +G      Q  ALDLL+ L  L +NL+ILT TRIGMTVN LRKSS+DDEVI LAK+LIK WK+++     T      AK+                       K      +            S+Q  F + G+        D VR++CREML+ +L   GE+PEG  +  EE+A  +EDA++ +F +T M+YKN+IRSRV NLKD KNP LR N + G +  ++ + MT EEMAS+++KK R+ F+K+ I+ +QLA  +GT TDLL+C KCKKRNCTYNQ+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    3 VEEEVFRIQKKMSKMASDGTG----QDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLASPAPTTPNNSSAKEGSSNNSSASKSTSAAKSSSSISGKDKSSSSSSSKDKEKKGSTSSSQTSFPSGGMT-------DAVRIKCREMLATALKI-GEVPEGCGEP-EEMAAELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWKFC 313

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BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|1174652|sp|P23193.2|TCEA1_HUMAN (RecName: Full=Transcription elongation factor A protein 1; AltName: Full=Transcription elongation factor S-II protein 1; AltName: Full=Transcription elongation factor TFIIS.o)

HSP 1 Score: 276.174 bits (705), Expect = 2.921e-91
Identity = 147/310 (47.42%), Postives = 211/310 (68.06%), Query Frame = 0

Query:    1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYV--PETNAGGD-KAKDKTKKDEGGPAKDDKTNGS------QEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSL-TGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            MEDEV+   K+++K        + + + ALDLL+ L  + + L +L +TRIGM+VNA+RK S D+EV +LAKSLIK+WKK +  P T    D K K+     +  P   +++  S      ++  +A+D +++   P +A +T D VRL+CREML+ +L TG+  +  G  +  EE+   IE+A++++ ++T M+YKN++RSR+ NLKD KNP LR+NVL G I P+ F+ MTAEEMAS+++K+ R++  K+ I   Q+AK  GT TDL  CGKCKK+NCTY Q+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    1 MEDEVVRFAKKMDKMVQ-----KKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVS-SFP-RAPSTSDSVRLKCREMLAAALRTGDDYIAIGADE--EELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301

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BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|122135281|sp|Q29RL9.1|TCEA1_BOVIN (RecName: Full=Transcription elongation factor A protein 1; AltName: Full=Transcription elongation factor S-II protein 1)

HSP 1 Score: 275.789 bits (704), Expect = 4.370e-91
Identity = 148/309 (47.90%), Postives = 209/309 (67.64%), Query Frame = 0

Query:    1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYV--PETNAGGD-KAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEF-----LTQGLPCKAQATGDEVRLRCREMLSKSL-TGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            MEDEV+ + K+++K        + + + ALDLL+ L  + + L +L +TRIGM+VNA+RK S D+EV +LAKSLIK+WKK +  P T+   + K KD     +  P   ++++ S    S +DE           P +A +T D VRL+CREML+ +L TG+  +  G  +  EE+   IE+A++++ ++T M+YKN++RSR+ NLKD KNP LR+NVL G I P+ F+ MTAEEMAS+++K+ R++  K+ I   Q+AK  GT TDL  CGKCKK+NCTY Q+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    1 MEDEVIRIAKKMDKMVQ-----KKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFP-RAPSTSDSVRLKCREMLAAALRTGDDYIAIGADE--EELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301

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BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|28380825|sp|P10711.2|TCEA1_MOUSE (RecName: Full=Transcription elongation factor A protein 1; AltName: Full=Transcription elongation factor S-II protein 1; AltName: Full=Transcription elongation factor TFIIS.o)

HSP 1 Score: 271.937 bits (694), Expect = 1.470e-89
Identity = 147/314 (46.82%), Postives = 212/314 (67.52%), Query Frame = 0

Query:    1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYV--PETNAGGDKAKDKTKKDEGGPAKDDKTNGS-----------QEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSL-TGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            MEDEV+ + K+++K        + + + ALDLL+ L  + + L +L +TRIGM+VNALRK S D+EV +LAKSLIK+WKK +  P T    DK  ++ KK+    +++                 ++  +A+D +++   P +A +T D VRL+CREML+ +L TG+  +  G  +  EE+   IE+A++++ ++T M+YKN++RSR+ NLKD KNP LR+NVL G I P+ F+ MTAEEMAS+++K+ R++  K+ I   Q+AK  GT TDL  CGKCKK+NCTY Q+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    1 MEDEVVRIAKKMDKMVQ-----KKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLIKSWKKLLDGPST----DKDPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDETNARDTYVS-SFP-RAPSTSDSVRLKCREMLAAALRTGDDYVAIGADE--EELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301

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BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|73919859|sp|Q4KLL0.1|TCEA1_RAT (RecName: Full=Transcription elongation factor A protein 1; AltName: Full=Transcription elongation factor S-II protein 1)

HSP 1 Score: 271.937 bits (694), Expect = 1.569e-89
Identity = 146/314 (46.50%), Postives = 212/314 (67.52%), Query Frame = 0

Query:    1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYV--PETNAGGDKAKDKTKKDEGGPAKDDKTNGS-----------QEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSL-TGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            MEDEV+ + K+++K        + + + ALDLL+ L  + + L +L +TRIGM+VNA+RK S D+EV +LAKSLIK+WKK +  P T    DK  ++ KK+    +++                 ++  +A+D +++   P +A +T D VRL+CREML+ +L TG+  +  G  +  EE+   IE+A++++ ++T M+YKN++RSR+ NLKD KNP LR+NVL G I P+ F+ MTAEEMAS+++K+ R++  K+ I   Q+AK  GT TDL  CGKCKK+NCTY Q+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    1 MEDEVVRIAKKMDKMVQ-----KKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPST----DKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVS-SFP-RAPSTSDSVRLKCREMLAAALRTGDDYVAIGADE--EELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301

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BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|122144556|sp|Q148K0.1|TCEA2_BOVIN (RecName: Full=Transcription elongation factor A protein 2; AltName: Full=Transcription elongation factor S-II protein 2)

HSP 1 Score: 253.832 bits (647), Expect = 1.486e-82
Identity = 137/313 (43.77%), Postives = 198/313 (63.26%), Query Frame = 0

Query:    2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEF--------------LTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            E+E+  + ++L+K        +     A+DLL+ L  + V L++L +TR+GM+VNALRK S D+EV+TLAKSLIK+WKK +  ++A   KA+++ +   GG      T+ S+E   AQD                +T   P     T D VR +CREML+ +L  + +    +    E +A  IE+ +F+   +T M+YKN++RSR+ NLKD KNP LR  VL G I P++ + MT+EEMAS+++K+ R++  K+ I   Q+A+  GT TDL  CGKC+K+NCTY Q+QTRS+DEPMTTFV CN+CGNRWKFC
Sbjct:    5 EEEIARIARRLDKMVT-----KKSAEGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLDASDA---KARERRR---GGSLP---TSSSKEASEAQDPSRKRPELPRMPSTPRITTFPP--VPVTCDAVRTKCREMLTAALQTDHD-HVAIGADCECLAGQIEECIFRDVGNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 300

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BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|28380177|sp|Q15560.1|TCEA2_HUMAN (RecName: Full=Transcription elongation factor A protein 2; AltName: Full=Testis-specific S-II; AltName: Full=Transcription elongation factor S-II protein 2; AltName: Full=Transcription elongation factor TFIIS.l)

HSP 1 Score: 250.751 bits (639), Expect = 2.767e-81
Identity = 131/306 (42.81%), Postives = 191/306 (62.42%), Query Frame = 0

Query:    2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDK-------TKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            E+E+  + ++L+K              A+DLL+ L  + + L++L +TR+GM+VNALRK S D+EVI LAKSLIK+WKK +   +A   KA+++       T   +   A D      +   +     +T   P     T D VR +CREML+ +L  + +    +    E ++  IE+ +F+   +T M+YKN++RSR+ NLKD KNP LR NVL G I P++ + MT+EEMAS+++K+ R++  K+ I   Q+A+  GT TDL  CGKC+K+NCTY Q+QTRS+DEPMTTFV CN+CGNRWKFC
Sbjct:    5 EEEIARIARRLDKMVTKK-----SAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL---DASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPP--VPVTCDAVRNKCREMLTAALQTDHDH-VAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299

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BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|28380169|sp|Q63799.1|TCEA2_RAT (RecName: Full=Transcription elongation factor A protein 2; AltName: Full=Protein S-II-T1; AltName: Full=Testis-specific S-II; AltName: Full=Transcription elongation factor S-II protein 2; AltName: Full=Transcription elongation factor TFIIS.l)

HSP 1 Score: 244.588 bits (623), Expect = 7.119e-79
Identity = 130/312 (41.67%), Postives = 195/312 (62.50%), Query Frame = 0

Query:    2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQATG------------DEVRLRCREMLSKSL-TGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            E+E+  + ++L+K          +   A+DLL+ L  + + L++L +TR+GM+VNALRK S D+E+I LAKSLIK+WKK +   +    K++D+ +   G P     T+ S++     D    +  P +  +T             D VR +CREML+ +L T    +  G++   E ++  IE+ +F    +T M+YKN++RSR+ NLKD KNP LR NVL G I P++ + MT+EEMAS+++K+ R++  K+ I   Q+A+  GT TDL  C KC+K+NCTY Q+QTRS+DEPMTT+V CN+CGNRWKFC
Sbjct:    4 EEEIARIARRLDKMVT-----RKNAEGAMDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL---DVSDGKSRDQGR---GTPLP---TSSSKDASGTTDLSCKKPDPPRTSSTPRITTFPQVPITCDAVRNKCREMLTLALQTDHDHVAVGVS--CEHLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC 299

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BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|28380213|sp|Q9QVN7.2|TCEA2_MOUSE (RecName: Full=Transcription elongation factor A protein 2; AltName: Full=Protein S-II-T1; AltName: Full=Testis-specific S-II; AltName: Full=Transcription elongation factor S-II protein 2; AltName: Full=Transcription elongation factor TFIIS.l)

HSP 1 Score: 241.891 bits (616), Expect = 7.590e-78
Identity = 131/318 (41.19%), Postives = 192/318 (60.38%), Query Frame = 0

Query:    2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCK------------------AQATGDEVRLRCREMLSKSL-TGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            E+E+  + ++L+K          +   A+DLL+ L  + + L++L +TR+GM+VNALRK S D+E+I LAKSLIK+WKK +   +    K++++ +   G P             S++D   T  L CK                     T D VR +CREML+ +L T    +  G+    E ++  IE+ +F    +T M+YKN++RSR+ NLKD KNP LR NVL G I P++ + MT+EEMAS+++K+ R++  K+ I   Q+A+  GT TDL  C KC+K+NCTY Q+QTRS+DEPMTT+V CN+CGNRWKFC
Sbjct:    4 EEEIARIARRLDKMVTRK-----NAEGAMDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL---DVSDGKSRNQGR---GTPL---------PTSSSKDASRTTDLSCKKPDPPRTPSTPRITTFPQVPITCDAVRNKCREMLTLALQTDHDHVAVGV--NCEHLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC 299

[Close]

BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|1729914|sp|P52652.1|TFS2_CAEEL (RecName: Full=Putative transcription elongation factor S-II; AltName: Full=TFIIS)

HSP 1 Score: 223.016 bits (567), Expect = 2.803e-70
Identity = 123/289 (42.56%), Postives = 173/289 (59.86%), Query Frame = 0

Query:   32 LLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGP-AKDDKTNGSQEG---------------GSAQDEFLTQ----GLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            LL  LS++ +++ I+  T IG+ VN +RK   DD V   AK++IK WK  V          K K++ D G P AK  +    +E                 S++ E + Q      P K     DE RL+  ++L  +L   G++P+G     EE+A  IE+ L+   +DT   Y   +RSR+FNL+DKKN ALRENVLTGV+  EKF+TMT+EEMAS ++++ R  F K+ I   Q++  +GT +D+ +CGKC K+NCTY Q+QTRS+DEPMTTFV+C +CGNRWKFC
Sbjct:   31 LLDQLSKIPMSIEIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWKNVV--------DGKSKSQDDGGAPPAKKHRKESVEEAKPEKKKIEAPYKRPEPSSRPEIVAQFASASFPPK-HLENDETRLKSAQLLLSALRF-GDMPQGTLDP-EELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATMTSEEMASAEIREMRDKFTKEAILEHQMSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWKFC 308

[Close]

BLAST of transcription elongation factor s-ii vs. nr
Match: gi|1061476066|gb|ODM93973.1| (Transcription elongation factor S-II [Orchesella cincta])

HSP 1 Score: 293.508 bits (750), Expect = 1.756e-95
Identity = 161/314 (51.27%), Postives = 210/314 (66.88%), Query Frame = 0

Query:    4 EVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAG------------GDKAKDKTKKD-EGGPAKDDKTNGSQEGGSAQDEFLTQ----GLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            +V +++KQLEK T  G     DQS ALDLL+TL  L ++L+IL++TRIGMTVN LRK S D EVITLAKSLIK WKKY+P+ +              G+  K     D E  PAK  K    +    A + F +       P  A +T D VRL+CRE+L  ++ G+G LP+G     + +A+ +E+ +FK+F +T M+YKN+IRSRV NLKD KNP LR N L G I+P + + MTAEEMAS+++K  R  F+K+ I+ +QLA  +GT TDLL+CGKC KR+CTYNQ+QTRS+DEPMTTFV CN CGNRWKFC
Sbjct:    6 KVSDIQKQLEKMTATGA----DQSQALDLLKTLRDLPMDLDILSSTRIGMTVNQLRKGSEDKEVITLAKSLIKKWKKYLPDGDGKSSPTSNSTSSKTGEVRKSNGDSDGESAPAKKAKIE-KEPPKPASNPFPSSKAITSFP--AVSTTDAVRLKCRELLMNAIRGDGSLPDG-TNDCDFLAEQLEEHIFKEFNNTEMKYKNRIRSRVANLKDTKNPNLRLNFLVGEISPLRMAKMTAEEMASDELKSLRTQFVKEAINDAQLATNQGTKTDLLKCGKCGKRDCTYNQLQTRSSDEPMTTFVLCNACGNRWKFC 311

[Close]

BLAST of transcription elongation factor s-ii vs. nr
Match: gi|936681221|ref|XP_014237632.1| (transcription elongation factor S-II isoform X1 [Trichogramma pretiosum])

HSP 1 Score: 293.508 bits (750), Expect = 1.794e-95
Identity = 159/311 (51.13%), Postives = 218/311 (70.10%), Query Frame = 0

Query:    2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVP------ETNAGGDKAKDKTKKD------EGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            E+EV+ ++K+L K T +G     DQ  AL+LL+ L +L VNL +L  TRIGMTVNALRK SRD+EVI+L+K LIK WKK++       E N+ G K K ++K +      E    K D +N +++  S ++   T   P    +T D VRL+CRE+L+ +L  +G   +G A + EE+A+ +EDA+F +FK+T  +Y+N++RSRV NL+D KNP LR N + G I P + +TMTAEEMAS+++K+ R  F K+ I+ +QLA+ +GT TDLL+CGKCKKRNCTYNQ+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    4 EEEVLRIQKKLTKMT-DGSEVAHDQ--ALELLKILQKLPVNLELLQKTRIGMTVNALRKCSRDEEVISLSKVLIKNWKKFLSGPKDSKEINSFGSKKKSESKSEKSKEEPENKNEKTDDSNKNKDDKSPKNSKKTSCYP--PPSTTDAVRLKCRELLASALKVDGVSMDGCA-SAEELAEDLEDAIFAEFKNTDNKYRNRVRSRVANLRDSKNPTLRTNFIVGAITPARLATMTAEEMASDEIKQLRDKFKKEAINDAQLAQVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 308

[Close]

BLAST of transcription elongation factor s-ii vs. nr
Match: gi|919012010|ref|XP_013390453.1| (transcription elongation factor S-II-like [Lingula anatina] >gi|919075205|ref|XP_013418728.1| transcription elongation factor S-II [Lingula anatina])

HSP 1 Score: 293.123 bits (749), Expect = 2.157e-95
Identity = 157/303 (51.82%), Postives = 202/303 (66.67%), Query Frame = 0

Query:    2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGG----PAKDDKTNGSQEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            E+EV  + K+LEK     +  E D +SA+D+L+ L   R+ L +L  TRIGM VN  RK+S +DEVITL+KSLIK+WKK +P   +    +  K   D  G     A  +K++ S+          T   P KA  T D VRL+CRE+L  +L  E + PEG A   +EIA  IED +F +F +T M+YK+++RSR+ NLKDKKNP LRENVL G I PEK + MTAEEMASED+KK R    K+ I+  Q+A   GT TDLL+CG+C KRNCTYNQ+QTRSADEPMTTFV+CN+CG+RWKFC
Sbjct:    4 EEEVTRIGKKLEKMI---DKKECDHASAVDILKVLKEQRMRLEVLQKTRIGMIVNNFRKASTNDEVITLSKSLIKSWKKLLPADQSTAKNSSSKPSTDGSGDHAEKANSEKSSTSEPSTPTAAPKQT-SFPLKAADTTDSVRLKCRELLLNALKVE-DPPEG-AGDPDEIAVAIEDCIFAEFGNTEMKYKSRVRSRIANLKDKKNPQLRENVLCGYILPEKMAKMTAEEMASEDMKKLRAKLTKEAINDHQMATTSGTKTDLLKCGRCLKRNCTYNQVQTRSADEPMTTFVFCNECGHRWKFC 300

[Close]

BLAST of transcription elongation factor s-ii vs. nr
Match: gi|1227993820|ref|XP_021928689.1| (transcription elongation factor S-II [Zootermopsis nevadensis] >gi|646708584|gb|KDR14833.1| Transcription elongation factor S-II [Zootermopsis nevadensis])

HSP 1 Score: 291.967 bits (746), Expect = 4.236e-95
Identity = 155/300 (51.67%), Postives = 213/300 (71.00%), Query Frame = 0

Query:    1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            +E+EVM ++K+L K + +G+     Q  AL+LL+ L +L VNL +LT TRIGMTVNALRKSS DDEVI+L+K+LIK WKK++   N     +K+     +    K++KT   +     +++ +    P  +  T D VRL+CRE+LS ++ G+GE+PEG A   E   +  E+A++++F++T MRYKN++RSRV NLKD KNP LR N L GVI   + + +TAEEMAS+++K  R  F+K+ I+ +QLA  +GT TDLL+CGKCKKRNCTYNQ+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    3 VEEEVMRIQKKLNKMS-SGDGT--GQEQALELLKVLQKLPVNLEVLTKTRIGMTVNALRKSSSDDEVISLSKTLIKNWKKFLSGPNT--PNSKETAGSSKKSKEKEEKTKDVETKDKEKEKKMPTTFPPASSNTTDAVRLKCRELLSTAVRGDGEIPEGCASPEELAEEL-EEAIYQEFRNTDMRYKNRVRSRVANLKDIKNPGLRMNFLVGVIPASRLAVLTAEEMASDEMKSLRNKFLKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVMCNECGNRWKFC 296

[Close]

BLAST of transcription elongation factor s-ii vs. nr
Match: gi|936572723|ref|XP_014218665.1| (transcription elongation factor S-II [Copidosoma floridanum])

HSP 1 Score: 292.352 bits (747), Expect = 5.634e-95
Identity = 157/315 (49.84%), Postives = 217/315 (68.89%), Query Frame = 0

Query:    2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVP--------ETNAGGDKAKDKTKKDEGG-------PAKDDKTNGSQEGGSAQDEFLTQG-LPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            E+EV+ ++++L K T NG+     Q  AL+LL+ L +L VNL++L  TRIGMTVNALRKSS+DDEVI L+K+LIK WKK++          +N+   K ++K  + + G       P  ++K   S+E   ++D    Q   P     T D VRL+CRE+L+ +L  +G + EG A + +E+A+ +EDA+F +FK+T  +Y+N+IRSRV NL+D KNP LR N + G I P + + MTAEEMAS+++K  R+ F K+ I+ +QLA  +GT TDLL+CGKCKKRNCTYNQ+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    4 EEEVLHIQRKLIKMT-NGDGT--GQEQALELLKILQQLPVNLDLLQKTRIGMTVNALRKSSKDDEVIGLSKTLIKNWKKFLSGSNKDCKDASNSSFKKREEKLYRQKDGADFKIDKPFFENKEYKSKEEKVSKDSLKKQSSFP--PPTTTDAVRLKCRELLASALKVDGTVIEGCA-SPDELAEELEDAIFAEFKNTDNKYRNRIRSRVANLRDSKNPTLRTNFIIGAITPARLAIMTAEEMASDEIKLIREKFKKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 312

[Close]

BLAST of transcription elongation factor s-ii vs. nr
Match: gi|194760841|ref|XP_001962641.1| (uncharacterized protein Dana_GF15561 [Drosophila ananassae] >gi|190616338|gb|EDV31862.1| uncharacterized protein Dana_GF15561 [Drosophila ananassae])

HSP 1 Score: 292.352 bits (747), Expect = 6.281e-95
Identity = 157/324 (48.46%), Postives = 211/324 (65.12%), Query Frame = 0

Query:    1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYV----PETNAGGDKAKDKTKKDEGGPAKDDKTNGS--------------------QEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            +EDEV  ++K++ K + + +    DQ  ALDLL+TL  L +NL ILT TRIGMTVN LRKSS+D+EVI LAK+LIK WK+++    P T      +K+               + S                    +   S+Q  F + G+        D VRL+CREML+ +L   GE+PEG A+  EE+A  +EDA++ +FK+T M+YKN+IRSRV NLKD KNP LR N + G ++ ++ + MT EEMAS+++KK R+ F+K+ I+ +QLA  +GT TDLL+CGKCKKRNCTYNQ+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    3 VEDEVFRIQKKMSKISTSSDGTGQDQ--ALDLLKTLQTLSINLEILTKTRIGMTVNELRKSSKDEEVIALAKTLIKNWKRFLASPAPTTPNNSSASKEGASNSSSASKTSSTASKSSSSKDKSSSSGSSSKDKREEKRASSSQTSFPSGGM-------TDAVRLKCREMLTTALKM-GEVPEGCAEP-EEMAAELEDAIYAEFKNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVSAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWKFC 315

[Close]

BLAST of transcription elongation factor s-ii vs. nr
Match: gi|91084035|ref|XP_966732.1| (PREDICTED: transcription elongation factor S-II isoform X1 [Tribolium castaneum] >gi|270008004|gb|EFA04452.1| Transcription elongation factor S-II-like Protein [Tribolium castaneum])

HSP 1 Score: 291.197 bits (744), Expect = 9.692e-95
Identity = 155/301 (51.50%), Postives = 209/301 (69.44%), Query Frame = 0

Query:    1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEF-LTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            +E+EV+ ++K+L K T         Q  ALDLL+ L  L +NL +LT TRIGMTVNALRKSS+DDEVI+L+K+LIK WKK++      G  AK+ +      P +D +   S+E      E  L    P  +  T D VRL+CREML+ ++  + E  EG A + E++A+ +E+A+F++FK+T MRYKN++RSR+ NLKD KNP LR N   G I   + + MTAEEMA++++K+ R+ F K+ I+ +QLA  +GT TDLL+CGKCKKRNCTYNQ+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    3 VEEEVLRIQKKLNKMTS---EDGSGQEQALDLLKQLQTLNINLEVLTKTRIGMTVNALRKSSKDDEVISLSKTLIKNWKKFL-----SGSNAKETSSTSTSKPKRDKEEKSSREDKDRDKEKKLPNQFPPSSSNTTDAVRLKCREMLAAAIRCDTEEFEGCA-SPEDLAEELEEAIFQEFKNTDMRYKNRVRSRIANLKDVKNPNLRTNFRIGAIPASRLAVMTAEEMANDEIKQLRERFTKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 294

[Close]

BLAST of transcription elongation factor s-ii vs. nr
Match: gi|1253735365|ref|XP_022651460.1| (transcription elongation factor S-II-like isoform X2 [Varroa destructor] >gi|1268040064|ref|XP_022692854.1| transcription elongation factor S-II-like isoform X2 [Varroa jacobsoni])

HSP 1 Score: 291.582 bits (745), Expect = 1.616e-94
Identity = 157/312 (50.32%), Postives = 208/312 (66.67%), Query Frame = 0

Query:    2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEG---GPAKDDKTNGSQEG---------GSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQT-VEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            E+EV+++ K L+K    G     +Q  ALD+L+ L  L + L ILT TRIGM VNALRKSS DD+VI+LAK+LIK WKK +  T +  D+    T  + G     +K+   N SQ+G          SAQ+       P  A  T D VRL+CRE+LS +L G G LPEG  +   +++A +IE + + +F +T M+YKN+IRSRV NLKD KNP LR  VL G I+P++ + M+AEEMAS+++K+ RQ   K+ ID  Q+A   GT TDLL+CGKC+K NCTYNQ+QTRSADEPMTTFV+CN+CG+RWKFC
Sbjct:   20 EEEVLKISKGLDKMVTAGPS---EQVQALDMLRQLQSLPITLEILTKTRIGMAVNALRKSSNDDDVISLAKTLIKNWKKLLGSTPSRNDEPSSGTGNNRGSGDASSKNKNKNQSQDGQQNNQTKAPPSAQNPPRQTSFPAAANTT-DAVRLKCRELLSAALKGSG-LPEGCDEVDPDDLARHIESSCYDEFNNTDMKYKNRIRSRVANLKDPKNPNLRLAVLIGQISPDRLAKMSAEEMASDELKQLRQKLTKEAIDDHQMAVTGGTKTDLLKCGKCRKSNCTYNQVQTRSADEPMTTFVFCNECGHRWKFC 326

[Close]

BLAST of transcription elongation factor s-ii vs. nr
Match: gi|125987179|ref|XP_001357352.1| (uncharacterized protein Dpse_GA17632 [Drosophila pseudoobscura pseudoobscura] >gi|195155927|ref|XP_002018852.1| GL25727 [Drosophila persimilis] >gi|54645683|gb|EAL34421.1| uncharacterized protein Dpse_GA17632 [Drosophila pseudoobscura pseudoobscura] >gi|194115005|gb|EDW37048.1| GL25727 [Drosophila persimilis])

HSP 1 Score: 290.812 bits (743), Expect = 2.037e-94
Identity = 159/322 (49.38%), Postives = 211/322 (65.53%), Query Frame = 0

Query:    1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPE---------TNAGGDKAKDKTKKDEGGPAKDDKTNGS-------------QEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            +EDEV  ++K++ K + + +     Q  ALDLL+ L  L +NL ILT TRIGMTVN LRKSS+DDEVI LAK+LIK WK+++           T AG D +     K         K   S             ++  S+Q  F + G+        D VRL+CREML+ +L   GE+PEG A+  EE+A  +EDA++ +FK+T M+YKN+IRSRV NLKD KNP LR N + G ++ ++ + MT EEMAS+++KK R+ F+K+ I+ +QLA  +GT TDLL+CGKCKKRNCTYNQ+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    3 VEDEVFRIQKKMSKISTSSDGS--GQEQALDLLKALQTLNINLEILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLASPAPTTPNNSTAAGKDSSNSSASKSSSSSKSASKEKSSSSSSSSSRDKREEKKVSSSQTSFPSGGMT-------DAVRLKCREMLTTALKM-GEVPEGCAEP-EEMAAELEDAIYSEFKNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVSAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWKFC 313

[Close]

BLAST of transcription elongation factor s-ii vs. nr
Match: gi|1236501047|ref|XP_022228632.1| (transcription elongation factor S-II [Drosophila obscura])

HSP 1 Score: 290.812 bits (743), Expect = 2.128e-94
Identity = 158/323 (48.92%), Postives = 216/323 (66.87%), Query Frame = 0

Query:    1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPE--------TNAGGDKAKDKTKKDEGGPAKD---------------DKTNGSQEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300
            +EDEV  ++K++ K + + +     Q  ALDLL+ L  L +NL ILT TRIGMTVN LRKSS+DDEVI LAK+LIK WK+++P         + A G ++ + +       +K                DK +  ++  S+Q  F + G+        D VRL+CREML+ +L   GE+PEG A+  EE+A  +EDA++ +FK+T M+YKN+IRSRV NLKD KNP LR N + G ++ ++ + MT EEMAS+++KK R+ F+K+ I+ +QLA  +GT TDLL+CGKCKKRNCTYNQ+QTRSADEPMTTFV CN+CGNRWKFC
Sbjct:    3 VEDEVFRIQKKMSKISTSSDGS--GQEQALDLLKALQTLNINLEILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLPSPAPATPNNSTAAGKESSNNSASKSSSSSKSASKEKSSSSSSSSSRDKRD-EKKVSSSQTSFPSGGMT-------DAVRLKCREMLTTALKI-GEVPEGCAEP-EEMAAELEDAIYSEFKNTDMKYKNRIRSRVANLKDLKNPGLRGNFMCGAVSAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWKFC 313

The following BLAST results are available for this feature:

BLAST of transcription elongation factor s-ii vs. L. salmonis genes
BLAST of transcription elongation factor s-ii vs. SwissProt
BLAST of transcription elongation factor s-ii vs. nr

BLAST of transcription elongation factor s-ii vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 3


Match Name	E-value	Identity	Description
EMLSAG00000007265	8.672e-131	62.25	supercontig:LSalAtl2s:LSalAtl2s408:619046:623457:1...	[more]
EMLSAG00000004399	1.755e-24	34.33	supercontig:LSalAtl2s:LSalAtl2s2314:6290:6873:-1 g...	[more]
EMLSAG00000008844	9.532e-9	30.61	supercontig:LSalAtl2s:LSalAtl2s551:168310:177216:1...	[more]

BLAST of transcription elongation factor s-ii vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|135660\|sp\|P20232.1\|TFS2_DROME	7.923e-93	46.91	RecName: Full=Transcription elongation factor S-II...	[more]
gi\|1174652\|sp\|P23193.2\|TCEA1_HUMAN	2.921e-91	47.42	RecName: Full=Transcription elongation factor A pr...	[more]
gi\|122135281\|sp\|Q29RL9.1\|TCEA1_BOVIN	4.370e-91	47.90	RecName: Full=Transcription elongation factor A pr...	[more]
gi\|28380825\|sp\|P10711.2\|TCEA1_MOUSE	1.470e-89	46.82	RecName: Full=Transcription elongation factor A pr...	[more]
gi\|73919859\|sp\|Q4KLL0.1\|TCEA1_RAT	1.569e-89	46.50	RecName: Full=Transcription elongation factor A pr...	[more]
gi\|122144556\|sp\|Q148K0.1\|TCEA2_BOVIN	1.486e-82	43.77	RecName: Full=Transcription elongation factor A pr...	[more]
gi\|28380177\|sp\|Q15560.1\|TCEA2_HUMAN	2.767e-81	42.81	RecName: Full=Transcription elongation factor A pr...	[more]
gi\|28380169\|sp\|Q63799.1\|TCEA2_RAT	7.119e-79	41.67	RecName: Full=Transcription elongation factor A pr...	[more]
gi\|28380213\|sp\|Q9QVN7.2\|TCEA2_MOUSE	7.590e-78	41.19	RecName: Full=Transcription elongation factor A pr...	[more]
gi\|1729914\|sp\|P52652.1\|TFS2_CAEEL	2.803e-70	42.56	RecName: Full=Putative transcription elongation fa...	[more]

Pages

BLAST of transcription elongation factor s-ii vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1061476066\|gb\|ODM93973.1\|	1.756e-95	51.27	Transcription elongation factor S-II [Orchesella c...	[more]
gi\|936681221\|ref\|XP_014237632.1\|	1.794e-95	51.13	transcription elongation factor S-II isoform X1 [T...	[more]
gi\|919012010\|ref\|XP_013390453.1\|	2.157e-95	51.82	transcription elongation factor S-II-like [Lingula...	[more]
gi\|1227993820\|ref\|XP_021928689.1\|	4.236e-95	51.67	transcription elongation factor S-II [Zootermopsis...	[more]
gi\|936572723\|ref\|XP_014218665.1\|	5.634e-95	49.84	transcription elongation factor S-II [Copidosoma f...	[more]
gi\|194760841\|ref\|XP_001962641.1\|	6.281e-95	48.46	uncharacterized protein Dana_GF15561 [Drosophila a...	[more]
gi\|91084035\|ref\|XP_966732.1\|	9.692e-95	51.50	PREDICTED: transcription elongation factor S-II is...	[more]
gi\|1253735365\|ref\|XP_022651460.1\|	1.616e-94	50.32	transcription elongation factor S-II-like isoform ...	[more]
gi\|125987179\|ref\|XP_001357352.1\|	2.037e-94	49.38	uncharacterized protein Dpse_GA17632 [Drosophila p...	[more]
gi\|1236501047\|ref\|XP_022228632.1\|	2.128e-94	48.92	transcription elongation factor S-II [Drosophila o...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold158_size296719	supercontig	scaffold158_size296719:96082..101936 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	P:primary metabolic process

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold158_size296719-snap-gene-1.16-mRNA-1	maker-scaffold158_size296719-snap-gene-1.16-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold158_size296719:96082..101936+

gene from alignment at scaffold158_size296719:96082..101936+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold158_size296719-snap-gene-1.16 ID=maker-scaffold158_size296719-snap-gene-1.16|Name=transcription elongation factor s-ii|organism=Tigriopus kingsejongensis|type=gene|length=5855bp|location=Sequence derived from alignment at scaffold158_size296719:96082..101936+ (Tigriopus kingsejongensis)
CTCCAGCCAACCTGATCGCGATCGCCGCTGGCCGGCTGGCTTGGAGCAAA
ATAAACGGTGCCGTGAGCGAGCCGAACCTGGTGAACGTGAGCGTTGTCAG
CGTGATCCGGAGGTGAGCGAGTAGTGGGCGGGTGGAACGGCGAACATGGA
GGACGAAGTCATGGAGCTGCGCAAGCAGCTGGAGAAGTGCACGCCGAATG
GCGAGCATCCGGAGCCGGACCAAAGCTCGGCCCTGGATTTGCTCCAGACC
TTGTCCCGACTCCGGGTCAATCTCAACATTCTCACCACCACCCGCATTGG
CATGACCGTCAATGCGCTCAGGTAAGCCCGCCGAGCCAGGAGCGGCTCAT
CGCACTAATCGCCCGCACTAATCGGCACTAATTGGCACTAATCGGCACTA
AATTGCACTGATCTGGCAGGAAGTCCAGCCGGGACGACGAGGTGATCACC
TTGGCCAAATCGCTCATCAAGACCTGGAAGAAGTACGTGCCCGAGACCAA
TGCCGGGGGCGACAAGGCCAAGGACAAGACCAAAAAGGACGAGGGCGGCC
CCGCCAAGGACGACAAGACCAACGGCAGCCAGGAGGGAGGCTCGGCCCAG
GACGAGTTCCTCACCCAGGGCCTGCCGTGCAAAGCCCAAGCCACCGGGGA
TGAGGTAACCGTCCGCTCCCTCGCCGACTGGCTCAGTGGTCGAGGCCAGT
GGCGGGCCTCTGATCGGGCCTGGCCCGCTCGTGAGCCCCAAAGTTGACCT
CGGGCCAGCATTGAGCCACCTAACCCGTGAGGCTAGGCCTGGAGAGGCTG
GGCGGTGGCCCGTGGAGTACTAGCATCACCCGGAGGTTAGGGCCCAGAAC
GAGACGCGTGTCCCCAGACGGTTCAGGCCGCTCGCCAGCCGTGCATGCCA
TCCATGGACGACGGCCTGGAGGTGCGGGTGACATTTCTATCCCTTCTGTA
GGGTCTAAGCGTCCATCGACGAGTCACTCTGACACCCTACGGAACGGGGT
GAAATGCACCCGCAGCTCCCGCCCGTCCATGGATGGCATTCACGGCTGGC
GAGCGGCCTGGACCGTCTGGGGACACGCGTCTCGTTCTGGGCCCTAACCT
CCGGGTGATGCTAGTACTCCACGGGCCACCGCCCGAGGAGCTCTACCGGA
GCACCCGGATGGAGCGGAAGCGGAGCGAGAGCCGATTCGGCCTGCCTGGA
TCGGCTCAGTCAGCCGAGGGGGATCTAGCCGCCCATGCGGGCCAGGGACT
CGCCCACTATGATCGGTCGAGTTGGCCACGCGTGTCGGCTCGGCCTCAGA
ACGCCTATGCTTGAAGTCACGTGACCCTTTCAGGCAGCTTCCGCTCCATC
TAGTAGTGCTTAGGTAGAGCTCCTGGCTGAGCCTTATCGGTTCTTGCCTC
GAGTACCAACGGTTATCAGTTCTTTCAAGAACACTTTTTTTTTTTCAGCT
TGAGAGAAAATATGCCTACCAGCGCACTAGGCCCATATTGACAGCTTAGG
TCGAGGGTTCTTTCCTCGAGTACCAACAGTTCCATCAGTTCTTTCAAGAA
CTTTTTTTTTTCCAGCTTGAGAGAAAATATGCCTACCAGCGCACTAGGCC
CATATTGACAGCTTAGGTCGAGGGTTCTTTCCTCGAGTACCAACGGTTAT
CAGTTCTTTCAAGAACTTTTTTTTCCAGCTTGAGAGAAAATATGCCTACA
AGCGCACTAGGCCCATGAGTACCAACAGTTCCATCAGTTCTTTCAAGAAC
TTTTTTTTTCCAGCTTGAGAGAAAATATGCCTGCAAGCGCTTTAGGCCCA
TATTGACAGCTTAGGTAGAGGGTTCTTTCCTCGAGTACCAACAGTTCCAT
CAGTTCTTTCAAGAACTTTTTTTTTTCCAGCTTGAGAGAAAATATGCCTA
CAAGTGCACTAGGCCCATGAGTACCAACAGTTCCATCAGTTCTTTCAAGA
ACTTTTTTTTTCCAGCTTGAGAGAAAATATGCCTGCAAGCGCTTTAGGCC
CATATTGACAGCTTAGGTAGAGAGTTCTTCCCTCGAGTACCAACAGTTCC
ATCAGTTCTTTCAAGAACTTTTTTTTTTTTTCCTGCTTGAGAGAAAATAT
GCCTACAAGCGCACTAGGCCCATATTGACAGCTTAGGTAGAGGGTTCTTT
CCTCGAGTACCAACAGTTCCATCAGTTCTTTCAAGAACTTTTTTTTTTCC
AGCTTGAGAGAAAATATGCCTACAAGTGCACTAGGCCCATATTGACAGCT
TAGGTCGAGGGTTCTTCCCTCGAGTACCAACAGTTCCATTAGTTCTTTCA
AGAACTTTTTTTTTTTCAGCTTGAGAGAAAATATGCCTACAAGCACTTTA
GGCCCATATTGACAGCTTAGGTAGAGGGTTCTTTCCTCGAGTACCAACAG
TTCCATCAGTTCTTTCAATAACTTTTTTTTTTTCAGCTTGAGAGAAAATA
TGCCTGCAAGCGCACTAGGCCCATATTGACAGCTTAGGTAGAGAGCTCCT
GGCCCAGGCGGCCGGGTGGAAGGAGCTCAAAAGCCGTGAATGTCCTCGGT
GGACGGAGCGGAGTGGCGTGAGACAAGGGGCCTGGTTCCGTTAGGTTTCA
GCGTCCATCAGCTGGTCACGCTTATCAAGCCGACGGAACTGGGCCCCATG
TCTCGCGCCAGCTCCGCTCCGTCCGGCGACTTTCGCGCTTCCTCCACCGT
CTGGGGCCATATTTTTCTTTTCGTGCGACCTCCAGGTCCGCTTTTTACCG
GTGCCTCTAAGGGCGCCATGGGCTCAGGCCACCGGTTCGCTTATTCATGC
CGGTTGAAGCTTGATGGCTCACCCACGGACTGGCCAGGGTCTGGGCGCCT
ACCCATTCTGCCACAGTTGCGTCCAGTCACTAGCCCCTGGAGTTGCCCCA
ACACCCCCCGCTCCGAATTCGGTGTGTCCAGCGGGGATTCACCCCGGCGG
GCTGGGATCAATTGCTGGTTCGCCGGACACCGAGCCCAATGAATTCAGCC
CGGGTCCTGAATGGGATAGCTATCGCGAGGGCAGTCGTTGGCCCTGGGGT
GAAGGATCCCCATGGGGCTAGCGTGCAGACGGATACATGGAGCGCTGCTA
TGGGTCTGAGCCGGGCTGGTGATCGAATGTCCAATAGACGAAGCCACCTG
GGGTCGCCTAGGGGCAGAATTCCCCCTTGATAAAATAATCCCCCGGATAT
AACCGCTGCCTTGAGGGTTGTATCAACTTTAAATACCACGATGCTGTAAA
GGCTGTATAGCCGGAACAAATGCCCAAGTATGTCTGACTTTGGTATAAGA
GTACCTACTTCACTACTACGCGAGTACTGGAACGAGTGATCACATCGAGT
AATGCAGAGGCAAATAAAGGGCCAAGTGCGTTCGCCACCTGGGCGCTGGA
TTGTAGCCGCTACAGTGCTATTAATATTTACCACAACTCAAGTCTATAAA
AATGTCTCTGTCATACGCTGTCGCGCTCAAGAGCCATCATTAATCTATTT
TTGAGTTCATTTCATTCGCTAGAAGGACATTTGGAAGTCGAATTCGAAGG
CTCTCTAAACGCCGAATTGTTTCTTATCCAGGTTCGGTTAAGATGTCGAG
AAATGTTATCCAAGTCTTTAACGGGCGAAGGTGAATTGCCGGAGGGAATG
GCTCAGACTGTGGAAGAAATTGCAGACTACATCGAAGATGCTCTCTTCAA
GAAGTTTAAGGACACAGGGATGAGATACAAGAACCAGATTCGATCCCGAG
TATTCAATCTTAAGGTGAGAAAGAGAGTTCAGTTGTTTCGACCTTGAACC
ATTTGGCAAATAGTGGTTGTTAATGAAATTTCCGGCCTTGCCAAACTGCA
TATAAAACGATCGATGCTTGTACTTGTACTTGGCTGATAAATCTTATCCA
ACATTTTCTGTTTCAGGACAAGAAAAACCCAGCGTTAAGAGAAAATGTTC
TGACTGGAGTGATTGCTCCCGAAAAGTTTTCCACCATGACGGCAGAAGAA
ATGGCCAGCGAGGACGTAAGTTTTGTCCTTAGATCACACATCATGCTCAA
GGAGCGCTCAAAAGTGGGATTAGCTGTATGATATTACAGTCCGTTGGCAT
TCATTTCAATACACGTGCGTGTGAAAGCAAGGGAGCCAAACCCAGTCAGT
GCTCATTGTAGTTTGGCTGTCCTTCAGCTTCCTTGGTGATTCATTTCGGC
CACGTGAGAAGGAAAGAGAGCTTGGAACACTTTTTCTGGAAAGGATTACT
AGTTGGGGACAACTGAACTCAAGCTCAAATGTACACCCAACCAAAACCAG
ACAAAGCAAAATAATACAACCATAGTGGGATCGAAGTACGTAAGTCCGCC
AACCAGGAGCTCTGAAGGGGCTGTCCTTGCCACTTAAGTTTGTTGAGGGG
GGCAACACATTTTGTTGGCCTGTAAAAAGTACTCTGCCTAGATCTTGTAA
TTATCATCTACTAAAAACAGCTACTCAGAACGCCTCAAGGTTTTTTACCG
ACTTATTGGACATCTGGATACCCTGACTTGTCACTCGATCAGAGTCAGTG
GATGGTAAAAAAACGAAGCTTATTGCGGGGGGAGCGCGAATATATGGCCG
GCATATTTTTCAACCCATCTGTATTAGTTGCGAGAGAGACGCATTGCAGC
ACAATAAATTCAATCTTCATTCAACCATTAAGCGATTGTATCGTCCCAAA
GCGCAAATGGGGGTATTACCACCTTTTTTAACGAATTGCTTGAAGGCCAT
CAAGGCTGAAGTGGATAAGGGGCACGAGCCCTCGGCCATTGACGTGAAAC
AGTTTATTCCACGCTGAAGTATACGCCCCACCAAGGATTGTGGGTGGAGG
GAGCTTCAAGGGTTCAACAATTTCATGACTTAATTTATCTTAGTGGCCGT
TTGAAATGTTTGATGTTTAAATTTATTTGTCTTGCAAGCTATTTTTAAAT
TTCAGTTCTGCATGGTACTGTTTTGCATTCCACTGGAACATATCCCGATA
CATTTCTGAAAGTTATTAACGTTTCCTCGGTGGCTTTTTACACTTAATGT
CAAATATTTGCAGATATTTAAGCATGTATGGTGACTACCAGGACACAATC
ATTTATCTAGCCATCTCTTAAAGACTGGCTCATATTGCTCAAATGATTGT
TTCCTCAACTAATGGGATGGTTGACTAACCTTCATTATTTGATGACGGAA
ACCTATCAAACTGCTTAACATTTCGTTCCCTGGTTCTAGAAACTAGTTCT
GATACAAAACAATGCAAAGAACAAACCAATGATTCATTAAAGAGGGCATC
AGACAATGATATTTCCAGCCGCTCAATTTGGAGATTAGGCGCGACCATTC
CAAAGAAACGGTCTCGCTATCAAGATGAGGCCCCACTGTCCATTTTCTGG
TTTTTGGAGTAAAAATAAAGAAAAATTGGCTTGTTGATGGTGTTAGGTGT
CATAAAGGGTATTCACTTGAACCTCTCTCTTCATATTTTGTTTGTAATTT
CAGGTCAAAAAGCAGAGACAGTCCTTCATCAAACAAGGCATTGACGCCTC
CCAATTGGCCAAAGCAGAAGGCACGCATACTGATTTGCTCCAGTGTGGCA
AATGTAAGAAGAGAAATTGCACCTACAACCAGATCCAGACTCGGTCCGCT
GATGAGCCGATGACCACCTTCGTCTATTGCAACGATTGCGGGAATCGCTG
GAAGTTTTGCTAGACATCCTTCGCCAGTTGTGAATAACGAATGGAAACAA
AAGCGTACGAGGATTTTGAAAAGTTCAAAGGATCACTCCGTGGTATCTCA
ATGTCTGCCGATTGGGTGGTCATGTAATCGTCTCAATAAAGTGTGCCAGA
AACCA

Synonyms

The feature 'transcription elongation factor s-ii' has the following synonyms


Synonym
Tk05687

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