EMLSAG00000004399, EMLSAG00000004399-687165 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004399
Unique NameEMLSAG00000004399-687165
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004399 vs. GO
Match: - (symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0032784 "regulation of DNA-templated transcription, elongation" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0032784 Gene3D:1.20.930.10 SUPFAM:SSF47676 TIGRFAMs:TIGR01385 OrthoDB:EOG7GQXWQ TreeFam:TF314970 GeneTree:ENSGT00390000017794 EMBL:AADN03002252 Ensembl:ENSGALT00000024655 Uniprot:F1NP36)

HSP 1 Score: 61.2326 bits (147), Expect = 1.808e-10
Identity = 57/201 (28.36%), Postives = 77/201 (38.31%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKC----QRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-----------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            M  N +RK S ++EV ++AKSLIK+WKK              K+                             +A  NS   S P     +T+D VR++C EML+                                   +KY            D K P LR+NVL G I P KFA MTA+EM S E+K+ R +  K+ I
Sbjct:   37 MSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKEPASSSQNSPEAREESSSSSNSSSRKEEGSAPSNSFIPSFPRA--PSTSDSVRVKCREMLSAALRTGDDYIAIGADEEELGSQIEEAIFQELKNTDMKYKNRVRSRIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKEAI 235
[Close]
BLAST of EMLSAG00000004399 vs. GO
Match: - (symbol:TCEA1 "Transcription elongation factor A protein 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS] [GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS] [GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral process" evidence=TAS] [GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0032784 "regulation of DNA-templated transcription, elongation" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0050434 "positive regulation of viral transcription" evidence=TAS] Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0032784 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892 Gene3D:1.20.930.10 SUPFAM:SSF47676 eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198 EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995 EMBL:AC100821 EMBL:BC072460 PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1 RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 BioGrid:112779 DIP:DIP-48480N IntAct:P23193 MINT:MINT-3009864 STRING:9606.ENSP00000382541 PhosphoSite:P23193 DMDM:1174652 PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401 Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3 UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264 HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193 PharmGKB:PA36371 InParanoid:P23193 OMA:DSIRIKC OrthoDB:EOG7GQXWQ TreeFam:TF314970 EvolutionaryTrace:P23193 GeneWiki:TCEA1 GenomeRNAi:6917 NextBio:27057 PMAP-CutDB:P23193 PRO:PR:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1 Genevestigator:P23193 Uniprot:P23193)

HSP 1 Score: 59.3066 bits (142), Expect = 7.772e-10
Identity = 59/202 (29.21%), Postives = 79/202 (39.11%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKK-----CQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-----------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            M  N +RK S ++EV ++AKSLIK+WKK        K L  + K+                             NA+   +S S P     +T+D VRL+C EML                                    +KY            D K P LR+NVL G I P  FA MTA+EM S E+K+ R +  K+ I
Sbjct:   48 MSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEK-KKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVS-SFPRA--PSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 245
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BLAST of EMLSAG00000004399 vs. GO
Match: - (symbol:TCEA1 "Transcription elongation factor A protein 1" species:9913 "Bos taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0032784 "regulation of DNA-templated transcription, elongation" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0032784 Gene3D:1.20.930.10 SUPFAM:SSF47676 TIGRFAMs:TIGR01385 OrthoDB:EOG7GQXWQ TreeFam:TF314970 GeneTree:ENSGT00390000017794 OMA:LECGKCK EMBL:DAAA02038289 EMBL:DAAA02038290 Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2)

HSP 1 Score: 56.225 bits (134), Expect = 9.866e-9
Identity = 57/201 (28.36%), Postives = 76/201 (37.81%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKC----QRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-----------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            M  N +RK S ++EV ++AKSLIK+WKK              K+                             NA+   +S S P     +T+D VRL+C EML                                    +KY            D K P LR+NVL G I P  FA MTA+EM S E+K+ R +  K+ I
Sbjct:   27 MSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVS-SFPRA--PSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 224
[Close]
BLAST of EMLSAG00000004399 vs. GO
Match: - (symbol:Tcea1 "transcription elongation factor A (SII) 1" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218 "erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation of DNA-templated transcription, elongation" evidence=IEA] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=IDA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0032784 Gene3D:1.20.930.10 SUPFAM:SSF47676 eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 OrthoDB:EOG7GQXWQ EMBL:M18210 EMBL:D00925 EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 PIR:A29950 RefSeq:NP_001153222.1 RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263 ProteinModelPortal:P10711 SMR:P10711 BioGrid:203995 PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711 Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399 UCSC:uc007afi.2 InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 PRO:PR:P10711 ArrayExpress:P10711 Bgee:P10711 CleanEx:MM_TCEA1 Genevestigator:P10711 Uniprot:P10711)

HSP 1 Score: 56.225 bits (134), Expect = 1.182e-8
Identity = 58/201 (28.86%), Postives = 76/201 (37.81%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKC----QRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-----------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            M  N LRK S ++EV ++AKSLIK+WKK              K+                             NA+   +S S P     +T+D VRL+C EML                                    +KY            D K P LR+NVL G I P  FA MTA+EM S E+K+ R +  K+ I
Sbjct:   48 MSVNALRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDETNARDTYVS-SFPRA--PSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 245
[Close]
BLAST of EMLSAG00000004399 vs. GO
Match: - (symbol:TCEA1 "Transcription elongation factor A protein 1" species:9913 "Bos taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0032784 "regulation of DNA-templated transcription, elongation" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0032784 Gene3D:1.20.930.10 SUPFAM:SSF47676 eggNOG:COG1594 EMBL:BC114117 RefSeq:NP_001039390.1 UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:9913.ENSBTAP00000004499 PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145 NextBio:20867283 TIGRFAMs:TIGR01385 Uniprot:Q29RL9)

HSP 1 Score: 55.8398 bits (133), Expect = 1.228e-8
Identity = 57/201 (28.36%), Postives = 76/201 (37.81%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKC----QRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-----------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            M  N +RK S ++EV ++AKSLIK+WKK              K+                             NA+   +S S P     +T+D VRL+C EML                                    +KY            D K P LR+NVL G I P  FA MTA+EM S E+K+ R +  K+ I
Sbjct:   48 MSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVS-SFPRA--PSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 245
[Close]
BLAST of EMLSAG00000004399 vs. GO
Match: - (symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0032784 "regulation of DNA-templated transcription, elongation" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0032784 Gene3D:1.20.930.10 SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 OMA:DSIRIKC OrthoDB:EOG7GQXWQ TreeFam:TF314970 GeneTree:ENSGT00390000017794 RefSeq:XP_005638043.1 Ensembl:ENSCAFT00000039344 GeneID:477879 Uniprot:E2QVN6)

HSP 1 Score: 55.8398 bits (133), Expect = 1.444e-8
Identity = 57/201 (28.36%), Postives = 76/201 (37.81%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKC----QRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-----------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            M  N +RK S ++EV ++AKSLIK+WKK              K+                             NA+   +S S P     +T+D VRL+C EML                                    +KY            D K P LR+NVL G I P  FA MTA+EM S E+K+ R +  K+ I
Sbjct:   48 MSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDPEEKKKDTAITSQNSPEAREESSSSGNVSSRKDETNARDTYVS-SFPRA--PSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 245
[Close]
BLAST of EMLSAG00000004399 vs. GO
Match: - (symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0032784 "regulation of DNA-templated transcription, elongation" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0032784 Gene3D:1.20.930.10 SUPFAM:SSF47676 CTD:6917 KO:K03145 TIGRFAMs:TIGR01385 OMA:DSIRIKC OrthoDB:EOG7GQXWQ TreeFam:TF314970 GeneTree:ENSGT00390000017794 EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495 ProteinModelPortal:F1RSG8 Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724 Uniprot:F1RSG8)

HSP 1 Score: 55.4546 bits (132), Expect = 1.690e-8
Identity = 57/200 (28.50%), Postives = 76/200 (38.00%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKC---QRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-----------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            M  N +RK S ++EV ++AKSLIK+WKK             K+                             NA+   +S S P     +T+D VRL+C EML                                    +KY            D K P LR+NVL G I P  FA MTA+EM S E+K+ R +  K+ I
Sbjct:   48 MSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKDTAITSQNSPEAREESSSGHGSSRKDEPNARDTYVS-SFPRA--PSTSDSVRLKCREMLAAALRTGEDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 244
[Close]
BLAST of EMLSAG00000004399 vs. GO
Match: - (symbol:Tcea1 "Transcription elongation factor A protein 1" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation of DNA-templated transcription, elongation" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0032784 Gene3D:1.20.930.10 SUPFAM:SSF47676 eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 OMA:DSIRIKC OrthoDB:EOG7GQXWQ TreeFam:TF314970 EMBL:BC099141 RefSeq:NP_001020906.1 RefSeq:XP_003752832.1 RefSeq:XP_006237878.1 RefSeq:XP_006251782.1 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0 SMR:Q4KLL0 BioGrid:263480 STRING:10116.ENSRNOP00000010893 PhosphoSite:Q4KLL0 PaxDb:Q4KLL0 PRIDE:Q4KLL0 Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453 KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880 GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080 Genevestigator:Q4KLL0 Uniprot:Q4KLL0)

HSP 1 Score: 55.4546 bits (132), Expect = 2.216e-8
Identity = 57/201 (28.36%), Postives = 76/201 (37.81%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKC----QRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-----------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            M  N +RK S ++EV ++AKSLIK+WKK              K+                             NA+   +S S P     +T+D VRL+C EML                                    +KY            D K P LR+NVL G I P  FA MTA+EM S E+K+ R +  K+ I
Sbjct:   48 MSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVS-SFPRA--PSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 245
[Close]
BLAST of EMLSAG00000004399 vs. GO
Match: - (symbol:LOC498453 "similar to transcription elongation factor A 1 isoform 2" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0030218 "erythrocyte differentiation" evidence=ISO] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=ISO] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO] REFSEQ:XM_003752784 Ncbi:XP_003752832)

HSP 1 Score: 55.4546 bits (132), Expect = 2.216e-8
Identity = 57/201 (28.36%), Postives = 76/201 (37.81%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKC----QRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-----------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            M  N +RK S ++EV ++AKSLIK+WKK              K+                             NA+   +S S P     +T+D VRL+C EML                                    +KY            D K P LR+NVL G I P  FA MTA+EM S E+K+ R +  K+ I
Sbjct:   48 MSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVS-SFPRA--PSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 245
[Close]
BLAST of EMLSAG00000004399 vs. GO
Match: - (symbol:Tcea1 "transcription elongation factor A (SII) 1" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation of DNA-templated transcription, elongation" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0032784 Gene3D:1.20.930.10 SUPFAM:SSF47676 eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 OMA:DSIRIKC OrthoDB:EOG7GQXWQ TreeFam:TF314970 EMBL:BC099141 RefSeq:NP_001020906.1 RefSeq:XP_003752832.1 RefSeq:XP_006237878.1 RefSeq:XP_006251782.1 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0 SMR:Q4KLL0 BioGrid:263480 STRING:10116.ENSRNOP00000010893 PhosphoSite:Q4KLL0 PaxDb:Q4KLL0 PRIDE:Q4KLL0 Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453 KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880 GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080 Genevestigator:Q4KLL0 Uniprot:Q4KLL0)

HSP 1 Score: 55.4546 bits (132), Expect = 2.216e-8
Identity = 57/201 (28.36%), Postives = 76/201 (37.81%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKC----QRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-----------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            M  N +RK S ++EV ++AKSLIK+WKK              K+                             NA+   +S S P     +T+D VRL+C EML                                    +KY            D K P LR+NVL G I P  FA MTA+EM S E+K+ R +  K+ I
Sbjct:   48 MSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVS-SFPRA--PSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 245
[Close]
BLAST of EMLSAG00000004399 vs. C. finmarchicus
Match: gi|592777969|gb|GAXK01176599.1| (TSA: Calanus finmarchicus comp2033_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 53.5286 bits (127), Expect = 3.840e-8
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGIDAS 153
            D K P+LR+N+L  ++ P + A MT++EM + EVK +R  +VK+GID+S
Sbjct:  572 DKKNPSLRQNLLLKLVTPERLAKMTSEEMANDEVKSEREKFVKEGIDSS 718

HSP 2 Score: 44.2838 bits (103), Expect = 5.231e-5
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKK 28
            M  N LRK+SKE+E VT+AKSLIKTWKK
Sbjct:  176 MTVNALRKSSKEEETVTVAKSLIKTWKK 259
[Close]
BLAST of EMLSAG00000004399 vs. C. finmarchicus
Match: gi|592803218|gb|GAXK01151350.1| (TSA: Calanus finmarchicus comp790497_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 1.242e-1
Identity = 13/33 (39.39%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   90 DDVRLQCHEMLTLKYDMKKPALRENVLRGIIEP 122
            D   +QCH++  +  D+    +REN LR I+EP
Sbjct:   92 DSWEVQCHQLGLIHIDIMTSLIRENSLRFIVEP 190
[Close]
BLAST of EMLSAG00000004399 vs. C. finmarchicus
Match: gi|592803220|gb|GAXK01151348.1| (TSA: Calanus finmarchicus comp790497_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 3.174e-1
Identity = 13/33 (39.39%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   90 DDVRLQCHEMLTLKYDMKKPALRENVLRGIIEP 122
            D   +QCH++  +  D+    +REN LR I+EP
Sbjct:   92 DSWEVQCHQLGLIHIDIMTSLIRENSLRFIVEP 190
[Close]
BLAST of EMLSAG00000004399 vs. L. salmonis peptides
Match: EMLSAP00000004399 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2314:6290:6873:-1 gene:EMLSAG00000004399 transcript:EMLSAT00000004399 description:"augustus_masked-LSalAtl2s2314-processed-gene-0.0")

HSP 1 Score: 239.58 bits (610), Expect = 2.705e-81
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKCQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLTLKYDMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGIDAS 153
            MXANNLRKTSKEKEVVTMAKSLIKTWKKCQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLTLKYDMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGIDAS
Sbjct:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKCQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLTLKYDMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGIDAS 153
[Close]
BLAST of EMLSAG00000004399 vs. L. salmonis peptides
Match: EMLSAP00000007265 (pep:novel supercontig:LSalAtl2s:LSalAtl2s408:619046:623457:1 gene:EMLSAG00000007265 transcript:EMLSAT00000007265 description:"maker-LSalAtl2s408-augustus-gene-5.32")

HSP 1 Score: 143.28 bits (360), Expect = 4.475e-42
Identity = 94/202 (46.53%), Postives = 102/202 (50.50%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKCQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-------------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGIDAS 153
            M  NNLRKTSKE+EVVT+AKSLIKTWKK   +   ++ K                              NAK N LSKS P K NIATTDDVRL+C EMLT                                      KY            D K PALRENVL GIIEPSKFAVMTADEM S EVKK+RAD+VKQGIDAS
Sbjct:   51 MTVNNLRKTSKEEEVVTVAKSLIKTWKKFVPENSDKKKKDSEEESKKSPHSKEES--------------NAKSNGLSKSFPQKTNIATTDDVRLRCREMLTNALKGIGSDLPDGICKSPEELADLIEEAIFSNFKSTSAKYKNQIRSRVFNLKDKKNPALRENVLTGIIEPSKFAVMTADEMASNEVKKQRADFVKQGIDAS 238
[Close]
BLAST of EMLSAG00000004399 vs. Select Arthropod Genomes
Match: gb|EEC00609.1| (transcription factor S-II, putative [Ixodes scapularis])

HSP 1 Score: 65.0846 bits (157), Expect = 1.485e-12
Identity = 55/204 (26.96%), Postives = 78/204 (38.24%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKCQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLN-----AKFNSLSKSLPSKMNIATTDDVRLQCHEMLT------------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGID 151
            M  N+LRK+S ++EV+T+AK LIK+WKK    T   +                                      A  N+   S P+     TT+ VRL+C E+++                                    +KY            D K P LR NVL G I+P + A MTADEM S E+K+ R  + K+ I+
Sbjct:    1 MAVNSLRKSSNDEEVITLAKLLIKSWKKLLSGTPGSKGGDSNGGSSKESETTVSTPKATAQTSAASKQTTYSAKQAPHNAKQTSFPAD----TTNSVRLKCRELISSALKCDDMPDGCDLDGLAAKIEEYILSWHCEFGDTNMKYKNRVRSRVSNLKDSKNPNLRLNVLHGAIDPDRIARMTADEMASDEMKQMRQKFTKEAIN 200
[Close]
BLAST of EMLSAG00000004399 vs. Select Arthropod Genomes
Match: gb|KFM60591.1| (Transcription elongation factor S-II, partial [Stegodyphus mimosarum])

HSP 1 Score: 61.2326 bits (147), Expect = 1.006e-11
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGID 151
            D K P LR NVL+GII P+K AVMTADEM S+E+KK R  + K+ I+
Sbjct:   53 DTKNPGLRSNVLKGIISPAKIAVMTADEMASEEMKKLRQKFTKEAIN 99
[Close]
BLAST of EMLSAG00000004399 vs. Select Arthropod Genomes
Match: XP_006566362.1 (PREDICTED: transcription elongation factor S-II isoform X2 [Apis mellifera])

HSP 1 Score: 51.2174 bits (121), Expect = 1.866e-7
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGID 151
            D+K P LR N + G I P++ AVMTA+EM S E+K+ R  + K+ I+
Sbjct:  160 DIKNPNLRTNFIAGAITPARLAVMTAEEMASDEIKQLREQFKKEAIN 206
[Close]
BLAST of EMLSAG00000004399 vs. Select Arthropod Genomes
Match: XP_006566360.1 (PREDICTED: transcription elongation factor S-II isoform X2 [Apis mellifera])

HSP 1 Score: 51.2174 bits (121), Expect = 1.866e-7
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGID 151
            D+K P LR N + G I P++ AVMTA+EM S E+K+ R  + K+ I+
Sbjct:  160 DIKNPNLRTNFIAGAITPARLAVMTAEEMASDEIKQLREQFKKEAIN 206
[Close]
BLAST of EMLSAG00000004399 vs. Select Arthropod Genomes
Match: XP_006566359.1 (PREDICTED: transcription elongation factor S-II isoform X1 [Apis mellifera])

HSP 1 Score: 50.8322 bits (120), Expect = 2.294e-7
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGID 151
            D+K P LR N + G I P++ AVMTA+EM S E+K+ R  + K+ I+
Sbjct:  211 DIKNPNLRTNFIAGAITPARLAVMTAEEMASDEIKQLREQFKKEAIN 257
[Close]
BLAST of EMLSAG00000004399 vs. Select Arthropod Genomes
Match: gb|KPM02203.1| (transcription elongation factor S-II-like protein 1 [Sarcoptes scabiei])

HSP 1 Score: 50.8322 bits (120), Expect = 2.439e-7
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGID 151
            D K P L+ NVLRG I P + AVMTA+EM S E+K+ R  + K+ I+
Sbjct:  231 DKKNPDLKLNVLRGHIAPERIAVMTAEEMASNEMKQLRQKFTKEAIN 277
[Close]
BLAST of EMLSAG00000004399 vs. nr
Match: gi|290462619|gb|ADD24357.1| (Transcription elongation factor S-II [Lepeophtheirus salmonis])

HSP 1 Score: 143.28 bits (360), Expect = 2.383e-39
Identity = 94/202 (46.53%), Postives = 102/202 (50.50%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKCQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT-------------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGIDAS 153
            M  NNLRKTSKE+EVVT+AKSLIKTWKK   +   ++ K                              NAK N LSKS P K NIATTDDVRL+C EMLT                                      KY            D K PALRENVL GIIEPSKFAVMTADEM S EVKK+RAD+VKQGIDAS
Sbjct:   51 MTVNNLRKTSKEEEVVTVAKSLIKTWKKFVPENSDKKKKDSEEESKKSPHSKEES--------------NAKSNGLSKSFPQKTNIATTDDVRLRCREMLTNALKGIGSDLPDGICKSPEELADLIEEAIFSNFKSTSAKYKNQIRSRVFNLKDKKNPALRENVLTGIIEPSKFAVMTADEMASNEVKKQRADFVKQGIDAS 238
[Close]
BLAST of EMLSAG00000004399 vs. nr
Match: gi|225719828|gb|ACO15760.1| (Transcription elongation factor A protein 1 [Caligus clemensi])

HSP 1 Score: 119.783 bits (299), Expect = 3.095e-30
Identity = 86/201 (42.79%), Postives = 94/201 (46.77%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKCQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT------------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGIDAS 153
            M  NNLRKTSKE+EVVT+AKSLIKTWKK   +                                     +    S SKS P K NI TTDDVRL+C EM+T                                     KY            D K PALRENVL GIIEPSKFAVMTADEM S EVKK+RA +VKQGIDAS
Sbjct:   53 MTVNNLRKTSKEEEVVTVAKSLIKTWKKFVPEN----------SDKKKKEPEVEKSSTPSSVKEESSSSSKINGSGSKSFPQKANINTTDDVRLRCREMITNALKGAGDLPDGICKSPEELADLIEESIFSSNKSTSAKYKNQIRSRVFNLRDKKNPALRENVLTGIIEPSKFAVMTADEMASDEVKKQRAAFVKQGIDAS 243
[Close]
BLAST of EMLSAG00000004399 vs. nr
Match: gi|225710958|gb|ACO11325.1| (Transcription elongation factor S-II [Caligus rogercresseyi])

HSP 1 Score: 107.457 bits (267), Expect = 1.757e-25
Identity = 79/209 (37.80%), Postives = 94/209 (44.98%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKCQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKS------LPSKMNIATTDDVRLQCHEMLT--------------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGIDAS 153
            M  NNLRK SK++EVVT+AKSLIKTWKK   +  ++  K+                             NAK  S          +P   NI TTDDVRL+C EM++                                       KY            D K PALRENVL GII+P KFAVMTADEM S E+K +RA +VKQGIDAS
Sbjct:   51 MTVNNLRKKSKDEEVVTVAKSLIKTWKKFVPENSEKSKKKEPEEESVKKCSSGKED-------------NAKGGSSGNGPAPKGFVPKSTNIGTTDDVRLRCREMISNALKGTTDAGLPDGTVKPPEEFGDLIEEAIFSNFKSTSAKYKNQIRSRVFNLRDKKNPALRENVLTGIIDPPKFAVMTADEMASDEIKNQRAAFVKQGIDAS 246
[Close]
BLAST of EMLSAG00000004399 vs. nr
Match: gi|675367689|gb|KFM60591.1| (Transcription elongation factor S-II, partial [Stegodyphus mimosarum])

HSP 1 Score: 61.2326 bits (147), Expect = 4.920e-9
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGID 151
            D K P LR NVL+GII P+K AVMTADEM S+E+KK R  + K+ I+
Sbjct:   53 DTKNPGLRSNVLKGIISPAKIAVMTADEMASEEMKKLRQKFTKEAIN 99
[Close]
BLAST of EMLSAG00000004399 vs. nr
Match: gi|510852279|gb|EPB68542.1| (transcription factor S-II, central domain protein [Ancylostoma ceylanicum])

HSP 1 Score: 56.6102 bits (135), Expect = 8.913e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            D K PALRENVL G+++P KFAVMT++EM S EV++ R  + K  I
Sbjct:   33 DKKNPALRENVLTGVVKPEKFAVMTSEEMASDEVREMRDKFNKAAI 78
[Close]
BLAST of EMLSAG00000004399 vs. nr
Match: gi|1009579397|ref|XP_015921162.1| (PREDICTED: transcription elongation factor S-II-like isoform X2 [Parasteatoda tepidariorum])

HSP 1 Score: 58.5362 bits (140), Expect = 1.860e-7
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGID 151
            D K PALR NVL+G+IEP++ AVMTAD+M S+E+K  R  + K+ I+
Sbjct:  152 DSKNPALRVNVLKGLIEPARIAVMTADDMASEEMKNLRQKFTKEAIN 198
[Close]
BLAST of EMLSAG00000004399 vs. nr
Match: gi|1009579395|ref|XP_015921161.1| (PREDICTED: transcription elongation factor S-II-like isoform X1 [Parasteatoda tepidariorum])

HSP 1 Score: 58.151 bits (139), Expect = 2.889e-7
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGID 151
            D K PALR NVL+G+IEP++ AVMTAD+M S+E+K  R  + K+ I+
Sbjct:  201 DSKNPALRVNVLKGLIEPARIAVMTADDMASEEMKNLRQKFTKEAIN 247
[Close]
BLAST of EMLSAG00000004399 vs. nr
Match: gi|541048597|gb|ERG87301.1| (transcription elongation factor s-ii [Ascaris suum])

HSP 1 Score: 58.151 bits (139), Expect = 3.408e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGID 151
            D K  ALRENVL G++ P+KFAVMT++EM S E++ +R  + KQ I+
Sbjct:  233 DKKNAALRENVLTGVVTPAKFAVMTSEEMASDEMRSQREKFTKQAIE 279
[Close]
BLAST of EMLSAG00000004399 vs. nr
Match: gi|732888859|gb|KHJ93220.1| (transcription factor S-II, central domain protein, partial [Oesophagostomum dentatum])

HSP 1 Score: 54.6842 bits (130), Expect = 5.584e-7
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            D K PALRENVL G ++P KFAVMT++EM S EV++ R  + K  +
Sbjct:   24 DKKNPALRENVLTGAVKPEKFAVMTSEEMASDEVRQMRDKFNKAAL 69
[Close]
BLAST of EMLSAG00000004399 vs. nr
Match: gi|597887450|gb|EYC36017.1| (hypothetical protein Y032_0946g3160 [Ancylostoma ceylanicum])

HSP 1 Score: 56.6102 bits (135), Expect = 6.227e-7
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:  105 DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGI 150
            D K PALRENVL G+++P KFAVMT++EM S EV++ R  + K  I
Sbjct:  112 DKKNPALRENVLTGVVKPEKFAVMTSEEMASDEVREMRDKFNKAAI 157
[Close]
BLAST of EMLSAG00000004399 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold158_size296719-snap-gene-1.16 (protein:Tk05687 transcript:maker-scaffold158_size296719-snap-gene-1.16-mRNA-1 annotation:"transcription elongation factor s-ii")

HSP 1 Score: 95.5153 bits (236), Expect = 1.205e-24
Identity = 68/201 (33.83%), Postives = 91/201 (45.27%), Query Frame = 0 
Query:    1 MXANNLRKTSKEKEVVTMAKSLIKTWKKCQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT------------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGIDAS 153
            M  N LRK+S++ EV+T+AKSLIKTWKK   +T                                    +A+   L++ LP K   AT D+VRL+C EML+                                    ++Y            D K PALRENVL G+I P KF+ MTA+EM S++VKK+R  ++KQGIDAS
Sbjct:   53 MTVNALRKSSRDDEVITLAKSLIKTWKKYVPET-----NAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQ-ATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDAS 247
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004399 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25
Match NameE-valueIdentityDescription
-1.808e-1028.36symbol:TCEA1 "Uncharacterized protein" species:903... [more]
-7.772e-1029.21symbol:TCEA1 "Transcription elongation factor A pr... [more]
-9.866e-928.36symbol:TCEA1 "Transcription elongation factor A pr... [more]
-1.182e-828.86symbol:Tcea1 "transcription elongation factor A (S... [more]
-1.228e-828.36symbol:TCEA1 "Transcription elongation factor A pr... [more]
-1.444e-828.36symbol:TCEA1 "Uncharacterized protein" species:961... [more]
-1.690e-828.50symbol:TCEA1 "Uncharacterized protein" species:982... [more]
-2.216e-828.36symbol:Tcea1 "Transcription elongation factor A pr... [more]
-2.216e-828.36symbol:LOC498453 "similar to transcription elongat... [more]
-2.216e-828.36symbol:Tcea1 "transcription elongation factor A (S... [more]

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BLAST of EMLSAG00000004399 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592777969|gb|GAXK01176599.1|3.840e-846.94TSA: Calanus finmarchicus comp2033_c0_seq1 transcr... [more]
gi|592803218|gb|GAXK01151350.1|1.242e-139.39TSA: Calanus finmarchicus comp790497_c0_seq3 trans... [more]
gi|592803220|gb|GAXK01151348.1|3.174e-139.39TSA: Calanus finmarchicus comp790497_c0_seq1 trans... [more]
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BLAST of EMLSAG00000004399 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000043992.705e-81100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s2314:6290... [more]
EMLSAP000000072654.475e-4246.53pep:novel supercontig:LSalAtl2s:LSalAtl2s408:61904... [more]
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BLAST of EMLSAG00000004399 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004399 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 6
Match NameE-valueIdentityDescription
gb|EEC00609.1|1.485e-1226.96transcription factor S-II, putative [Ixodes scapul... [more]
gb|KFM60591.1|1.006e-1159.57Transcription elongation factor S-II, partial [Ste... [more]
XP_006566362.11.866e-746.81PREDICTED: transcription elongation factor S-II is... [more]
XP_006566360.11.866e-746.81PREDICTED: transcription elongation factor S-II is... [more]
XP_006566359.12.294e-746.81PREDICTED: transcription elongation factor S-II is... [more]
gb|KPM02203.1|2.439e-751.06transcription elongation factor S-II-like protein ... [more]
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BLAST of EMLSAG00000004399 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 15
Match NameE-valueIdentityDescription
gi|290462619|gb|ADD24357.1|2.383e-3946.53Transcription elongation factor S-II [Lepeophtheir... [more]
gi|225719828|gb|ACO15760.1|3.095e-3042.79Transcription elongation factor A protein 1 [Calig... [more]
gi|225710958|gb|ACO11325.1|1.757e-2537.80Transcription elongation factor S-II [Caligus roge... [more]
gi|675367689|gb|KFM60591.1|4.920e-959.57Transcription elongation factor S-II, partial [Ste... [more]
gi|510852279|gb|EPB68542.1|8.913e-856.52transcription factor S-II, central domain protein ... [more]
gi|1009579397|ref|XP_015921162.1|1.860e-755.32PREDICTED: transcription elongation factor S-II-li... [more]
gi|1009579395|ref|XP_015921161.1|2.889e-755.32PREDICTED: transcription elongation factor S-II-li... [more]
gi|541048597|gb|ERG87301.1|3.408e-753.19transcription elongation factor s-ii [Ascaris suum... [more]
gi|732888859|gb|KHJ93220.1|5.584e-754.35transcription factor S-II, central domain protein,... [more]
gi|597887450|gb|EYC36017.1|6.227e-756.52hypothetical protein Y032_0946g3160 [Ancylostoma c... [more]

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BLAST of EMLSAG00000004399 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold158_size296719-snap-gene-1.161.205e-2433.83protein:Tk05687 transcript:maker-scaffold158_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2314supercontigLSalAtl2s2314:6290..6873 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s2314-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteTranscription elongation factor S-II [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004399 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004399EMLSAT00000004399-700246Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s2314:6290..6873-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004399-687165 ID=EMLSAG00000004399-687165|Name=EMLSAG00000004399|organism=Lepeophtheirus salmonis|type=gene|length=584bp|location=Sequence derived from alignment at LSalAtl2s2314:6290..6873- (Lepeophtheirus salmonis)
ATGMCTGCCAATAACCTGAGGAAAACGAGTAAAGAAAAGGAAGTCGTGAC
TATGGCCAAGTCCTTGATCAAGACTTGGAAGAAATGCCAAAGAAAGACTC
TGAAGAGGAGAGTAAAAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCCTCAATGCCAAGTTCAATAGCCTTTCCAAATCCCTCCCCTCTAAAA
TGAATATCGCAACAACGGATGATGTACGACTTCAATGTCATGAGATGTTG
ACCCTTAAATATGTACGAAGTGGTTTACCGGATGGKATTTGTAATTCTCC
TGAAGACTCGCAGATTTTTTCAACTTCAAATCCACTTCTGCCAAGTGCAA
GAATCAAATTCGATCACATGTTTTTAATTTGCAGGATATGAAGAAACCTG
CTCTTCGAGAGAACGTTCTTAGAGGTATTATAGAGCCATCCAAATTCGCT
GTCATGACAGCAGATGAAATGGTTTCCAAGGAAGTGAAGAAAAAGAGAGC
AGATTACGTAAAACAAGGGATTGATGCGTCATAA
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