transcription elongation factor s-ii, maker-scaffold158_size296719-snap-gene-1.16 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of transcription elongation factor s-ii vs. L. salmonis genes
Match: EMLSAG00000007265 (supercontig:LSalAtl2s:LSalAtl2s408:619046:623457:1 gene:EMLSAG00000007265 transcript:EMLSAT00000007265 description:"maker-LSalAtl2s408-augustus-gene-5.32") HSP 1 Score: 372.474 bits (955), Expect = 8.672e-131 Identity = 188/302 (62.25%), Postives = 233/302 (77.15%), Query Frame = 0 Query: 1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQ-ATGDEVRLRCREMLSKSLTGEG-ELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300 +E+EV ++R QLEK D S ALDLL+ L RL++NL ILT+TR+GMTVN LRK+S+++EV+T+AKSLIKTWKK+VPE + DK KKD +K K+ S+E +A+ L++ P K AT D+VRLRCREML+ +L G G +LP+G+ ++ EE+AD IE+A+F FK T +YKNQIRSRVFNLKDKKNPALRENVLTG+I P KF+ MTA+EMAS +VKKQR F+KQGIDASQLA+ +GT TDLL+CGKC KRNCTYNQIQTRSADEPMTTFV CN+CGNRWKFC Sbjct: 3 VEEEVTDIRNQLEKIVSGS----GDGSQALDLLKVLGRLKINLTILTSTRVGMTVNNLRKTSKEEEVVTVAKSLIKTWKKFVPENS-------DKKKKDSEEESK--KSPHSKEESNAKSNGLSKSFPQKTNIATTDDVRLRCREMLTNALKGIGSDLPDGICKSPEELADLIEEAIFSNFKSTSAKYKNQIRSRVFNLKDKKNPALRENVLTGIIEPSKFAVMTADEMASNEVKKQRADFVKQGIDASQLAQIQGTKTDLLKCGKCLKRNCTYNQIQTRSADEPMTTFVLCNECGNRWKFC 291
BLAST of transcription elongation factor s-ii vs. L. salmonis genes
Match: EMLSAG00000004399 (supercontig:LSalAtl2s:LSalAtl2s2314:6290:6873:-1 gene:EMLSAG00000004399 transcript:EMLSAT00000004399 description:"augustus_masked-LSalAtl2s2314-processed-gene-0.0") HSP 1 Score: 95.5153 bits (236), Expect = 1.755e-24 Identity = 69/201 (34.33%), Postives = 92/201 (45.77%), Query Frame = 0 Query: 53 MTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGG-----SAQDEFLTQGLPCKAQ-ATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDAS 247 M N LRK+S++ EV+T+AKSLIKTWKK +T K +A+ L++ LP K AT D+VRL+C EML+ ++Y D K PALRENVL G+I P KF+ MTA+EM S++VKK+R ++KQGIDAS Sbjct: 1 MXANNLRKTSKEKEVVTMAKSLIKTWKKCQRKTLKRRVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKFNSLSKSLPSKMNIATTDDVRLQCHEMLT------------------------------------LKY------------DMKKPALRENVLRGIIEPSKFAVMTADEMVSKEVKKKRADYVKQGIDAS 153
BLAST of transcription elongation factor s-ii vs. L. salmonis genes
Match: EMLSAG00000008844 (supercontig:LSalAtl2s:LSalAtl2s551:168310:177216:1 gene:EMLSAG00000008844 transcript:EMLSAT00000008844 description:"maker-LSalAtl2s551-augustus-gene-1.18") HSP 1 Score: 55.4546 bits (132), Expect = 9.532e-9 Identity = 30/98 (30.61%), Postives = 59/98 (60.20%), Query Frame = 0 Query: 167 IADYIEDALFKKF-KDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCG 263 + + IE++LF+ + KD +YK + RS VFN+KD+KN +++ I + ++TAEEMA++++++ R+ +K I+ K + D+++ G Sbjct: 642 LVEEIEESLFRYYNKDVTSKYKAKYRSLVFNIKDEKNTGFFRKIVSRKINSKDLVSLTAEEMANKELQRWREKELKNDIE-----KIKSHELDMIKLG 734
BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|34098662|sp|Q92576.3|PHF3_HUMAN (RecName: Full=PHD finger protein 3) HSP 1 Score: 67.3958 bits (163), Expect = 3.732e-11 Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 0 Query: 138 VRLRCREMLSKSLTGEG-ELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQ 237 VR +++L K LT ++PE A V A IE LF F+DT +YKN+ RS +FNLKD KN L + VL G + P+ M+ EE+AS+++ R+ Sbjct: 931 VRHSLKDILMKRLTDSNLKVPEEKAAKV---ATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRR 1028
BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|135659|sp|P27948.1|TFS2_ASFB7 (RecName: Full=Transcription factor S-II-related protein >gi|215274652|sp|P0C8F7.1|TFS2_ASFP4 RecName: Full=Transcription factor S-II-related protein) HSP 1 Score: 57.7658 bits (138), Expect = 1.216e-8 Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 0 Query: 202 NPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRW 297 N AL + +++G + PE +MT E+ K++ + SQ AE T + L +C CK+R CTY ++QTR+ DEP T F C CG+ + Sbjct: 152 NDALNK-LISGELKPEAIGSMTFAELCPSAALKEKTEITLR----SQQKVAEKT-SQLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|215274653|sp|P0C8F8.1|TFS2_ASFWA (RecName: Full=Transcription factor S-II-related protein) HSP 1 Score: 57.7658 bits (138), Expect = 1.263e-8 Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 0 Query: 202 NPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRW 297 N AL + +++G + PE +MT E+ K++ + SQ AE T + L +C CK+R CTY ++QTR+ DEP T F C CG+ + Sbjct: 152 NDALNK-LISGELKPEAIGSMTFAELCPSAALKEKTEITLR----SQQKVAEKT-SQLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|215274651|sp|P0C8F6.1|TFS2_ASFM2 (RecName: Full=Transcription factor S-II-related protein) HSP 1 Score: 56.9954 bits (136), Expect = 2.143e-8 Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 0 Query: 202 NPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRW 297 N AL + +++G + PE+ MT E+ K++ + SQ AE T + L +C CK+R CTY ++QTR+ DEP T F C CG+ + Sbjct: 152 NDALNK-LISGELKPEQLVGMTFAELCPSAALKEKTEITLR----SQQKVAEKT-SQLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
BLAST of transcription elongation factor s-ii vs. SwissProt
Match: gi|215274650|sp|P0C8F5.1|TFS2_ASFK5 (RecName: Full=Transcription factor S-II-related protein) HSP 1 Score: 56.225 bits (134), Expect = 4.029e-8 Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 0 Query: 202 NPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRW 297 N AL + +++G + PE +MT E+ K++ + SQ AE T + L +C CK+R CTY ++QTR+ DEP T + C CG+ + Sbjct: 152 NDALNK-LISGELKPEAIGSMTFAELCPSAALKEKTEITLR----SQQKVAEKT-SQLYKCPNCKQRMCTYREVQTRALDEPSTIYCTCKKCGHEF 241
BLAST of transcription elongation factor s-ii vs. nr
Match: gi|290462619|gb|ADD24357.1| (Transcription elongation factor S-II [Lepeophtheirus salmonis]) HSP 1 Score: 373.244 bits (957), Expect = 4.077e-127 Identity = 188/302 (62.25%), Postives = 233/302 (77.15%), Query Frame = 0 Query: 1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQ-ATGDEVRLRCREMLSKSLTGEG-ELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300 +E+EV ++R QLEK D S ALDLL+ L RL++NL ILT+TR+GMTVN LRK+S+++EV+T+AKSLIKTWKK+VPE + DK KKD +K K+ S+E +A+ L++ P K AT D+VRLRCREML+ +L G G +LP+G+ ++ EE+AD IE+A+F FK T +YKNQIRSRVFNLKDKKNPALRENVLTG+I P KF+ MTA+EMAS +VKKQR F+KQGIDASQLA+ +GT TDLL+CGKC KRNCTYNQIQTRSADEPMTTFV CN+CGNRWKFC Sbjct: 3 VEEEVTDIRNQLEKIVSGSR----DGSQALDLLKVLGRLKINLTILTSTRVGMTVNNLRKTSKEEEVVTVAKSLIKTWKKFVPENS-------DKKKKDSEEESK--KSPHSKEESNAKSNGLSKSFPQKTNIATTDDVRLRCREMLTNALKGIGSDLPDGICKSPEELADLIEEAIFSNFKSTSAKYKNQIRSRVFNLKDKKNPALRENVLTGIIEPSKFAVMTADEMASNEVKKQRADFVKQGIDASQLAQIQGTKTDLLKCGKCLKRNCTYNQIQTRSADEPMTTFVLCNECGNRWKFC 291
BLAST of transcription elongation factor s-ii vs. nr
Match: gi|225719828|gb|ACO15760.1| (Transcription elongation factor A protein 1 [Caligus clemensi]) HSP 1 Score: 348.591 bits (893), Expect = 2.831e-117 Identity = 181/301 (60.13%), Postives = 230/301 (76.41%), Query Frame = 0 Query: 1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQA-TGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300 +EDEV+E+R +LEK +G + Q ALDLL+ L RL++NLNILT TRIGMTVN LRK+S+++EV+T+AKSLIKTWKK+VPE + K + K K++ ++ S+ GS F P KA T D+VRLRCREM++ +L G G+LP+G+ ++ EE+AD IE+++F K T +YKNQIRSRVFNL+DKKNPALRENVLTG+I P KF+ MTA+EMAS++VKKQR +F+KQGIDASQLA+ +GT TDLL+CGKC K +CTYNQIQTRSADEPMTTFV CN CGNRWKFC Sbjct: 3 VEDEVVEIRSKLEKILSSGSSSDGGQ--ALDLLKVLGRLKINLNILTNTRIGMTVNNLRKTSKEEEVVTVAKSLIKTWKKFVPENSDKKKKEPEVEKSSTPSSVKEESSSSSKINGSGSKSF-----PQKANINTTDDVRLRCREMITNALKGAGDLPDGICKSPEELADLIEESIFSSNKSTSAKYKNQIRSRVFNLRDKKNPALRENVLTGIIEPSKFAVMTADEMASDEVKKQRAAFVKQGIDASQLAQIQGTKTDLLKCGKCGKSDCTYNQIQTRSADEPMTTFVLCNACGNRWKFC 296
BLAST of transcription elongation factor s-ii vs. nr
Match: gi|225710958|gb|ACO11325.1| (Transcription elongation factor S-II [Caligus rogercresseyi]) HSP 1 Score: 345.51 bits (885), Expect = 4.046e-116 Identity = 174/304 (57.24%), Postives = 224/304 (73.68%), Query Frame = 0 Query: 1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPA--KDDKTNGSQEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTG--EGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300 +E+EV+++RK+LE + + D + ALDLL+ L RL++NL+ILT TRIGMTVN LRK S+D+EV+T+AKSLIKTWKK+VPE + K + + + + + +D+ GS G A F+ + T D+VRLRCREM+S +L G + LP+G + EE D IE+A+F FK T +YKNQIRSRVFNL+DKKNPALRENVLTG+I P KF+ MTA+EMAS+++K QR +F+KQGIDASQLA +GT TDLL+CGKCK+ NCTYNQIQTRSADEPM TFV CN+CGNRWKFC Sbjct: 3 VEEEVVDIRKKLENILGDSD----DGNQALDLLKVLGRLKINLDILTVTRIGMTVNNLRKKSKDEEVVTVAKSLIKTWKKFVPENSEKSKKKEPEEESVKKCSSGKEDNAKGGSSGNGPAPKGFVPKSTNI---GTTDDVRLRCREMISNALKGTTDAGLPDGTVKPPEEFGDLIEEAIFSNFKSTSAKYKNQIRSRVFNLRDKKNPALRENVLTGIIDPPKFAVMTADEMASDEIKNQRAAFVKQGIDASQLAHIQGTKTDLLKCGKCKQSNCTYNQIQTRSADEPMATFVLCNECGNRWKFC 299
BLAST of transcription elongation factor s-ii vs. nr
Match: gi|1067091393|ref|XP_018007477.1| (PREDICTED: transcription elongation factor S-II-like [Hyalella azteca]) HSP 1 Score: 325.865 bits (834), Expect = 4.117e-108 Identity = 170/320 (53.12%), Postives = 218/320 (68.12%), Query Frame = 0 Query: 2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTK--KDEGGPAKDDKT----------------NGSQEGGSAQDEF---LTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300 EDEVM+++K+L+K T P DQ+ ALD L+ L L +NL ILT TRIGMTVNALRK+S+D EVI +AK LIK WKK+VP GDK D K K++ +KD+ NGS +GG LT + T D +RL+CREML +L G G++P+G+ E +A+ +EDA++ +FK+T +YK +IRSRV+NLKD KNP LR NVLTGVI+P+K + MT+EEMAS+D++ R+ F K+ ID QLA A+GT TDLL+CGKC KRNCTYNQ+QTRS+DEPMTTFV CNDCGNRWKFC Sbjct: 4 EDEVMKIKKKLDKMT----GPTGDQTLALDHLKVLKDLPINLTILTETRIGMTVNALRKASQDQEVIGIAKQLIKKWKKFVP-----GDKQSDDDKDVKEDSKKSKDNDAKAGSDSSNGSGPGSSKNGSSKGGEGSHSLPPGLTSNNVSASLHTTDALRLKCREMLGSALQGSGDMPDGVVAMPESLAEQLEDAIYAEFKNTNAQYKTRIRSRVYNLKDAKNPELRINVLTGVISPKKLAVMTSEEMASKDMQALREKFTKESIDDHQLAVAQGTKTDLLRCGKCGKRNCTYNQLQTRSSDEPMTTFVLCNDCGNRWKFC 314
BLAST of transcription elongation factor s-ii vs. nr
Match: gi|1325306427|ref|XP_023334825.1| (transcription elongation factor S-II-like [Eurytemora affinis]) HSP 1 Score: 310.842 bits (795), Expect = 7.449e-103 Identity = 164/301 (54.49%), Postives = 211/301 (70.10%), Query Frame = 0 Query: 1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQT-VEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300 +E+EV+ +RKQLEK + E D + ALDLL++L +L + L ILT+TRIGMTVN+LRKSS D+EV+TLAKSLIK+WKK VPE+ ++ +K K +K + + SA+ F + C M GEGELPEG Q ++A +E+A+F +FK T RYKNQIRSRVFNLKDKKNP+LR N+L G+++ ++ S MT+EEMA++DVKKQR+ F+K+GID +QLAK EGT TD+L+CGKCKK NCTYNQIQTRSADEPMTTFV CN+CGNRWKFC Sbjct: 2 VEEEVLSVRKQLEKISSG----EADNAQALDLLKSLGKLDITLTILTSTRIGMTVNSLRKSSTDEEVVTLAKSLIKSWKKLVPESAEKKEEKAEKK-------EKAEKKENASKSFSARPGF----------------SVECYRM-----KGEGELPEGCTQEGCSDLATSLEEAIFSQFKQTNQRYKNQIRSRVFNLKDKKNPSLRMNLLVGILSADRLSKMTSEEMANDDVKKQREKFVKEGIDNAQLAKVEGTTTDMLKCGKCKKSNCTYNQIQTRSADEPMTTFVLCNECGNRWKFC 270
BLAST of transcription elongation factor s-ii vs. nr
Match: gi|908438633|ref|XP_013078356.1| (PREDICTED: transcription elongation factor S-II-like [Biomphalaria glabrata]) HSP 1 Score: 302.753 bits (774), Expect = 3.016e-99 Identity = 153/303 (50.50%), Postives = 217/303 (71.62%), Query Frame = 0 Query: 2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGG-DKAKDKTKKDEGGPAKDDKTN-GSQE--GGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300 EDE++++ K+LEK + D SSALDLL+ L ++ L +L TRIGMTVN LRK+S +DEV++LAK+LIK WK+ +P + GG ++ ++ D D+ +N G++E G S++D Q + Q T D VR++CRE+LS +L E+P+G A +E+A IEDA+F++F +T M+YKN++RSRV NLKD +NP LR+NVL G+I+ +K ++M+AEEMAS+++K+ R+ K+ ID Q+AK GT TDL +CGKC+K NCTYNQ+QTRSADEPMTTFV+CN+CGNRWKFC Sbjct: 4 EDEIIKIGKKLEKLISSNT---ADHSSALDLLKALRDTKMTLEVLQKTRIGMTVNNLRKASSNDEVVSLAKTLIKHWKRLLPADSPGGISRSNSRSSGDASSQRMDETSNDGTEESKGDSSKD---GQSGQTRTQNTTDAVRIKCRELLSNALKA-SEIPDG-AHNPDELAASIEDAIFEEFGNTEMKYKNRVRSRVANLKDARNPQLRQNVLIGLISAQKIASMSAEEMASKEMKQLREKLTKEAIDDHQMAKTGGTTTDLFKCGKCRKNNCTYNQVQTRSADEPMTTFVFCNECGNRWKFC 298
BLAST of transcription elongation factor s-ii vs. nr
Match: gi|524901267|ref|XP_005107044.1| (PREDICTED: transcription elongation factor S-II-like [Aplysia californica]) HSP 1 Score: 302.368 bits (773), Expect = 5.327e-99 Identity = 152/304 (50.00%), Postives = 214/304 (70.39%), Query Frame = 0 Query: 2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGG-DKAKDKTKKDEGGPAKDDKTN-GSQEG---GSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300 EDEV ++ K+L+K + + ++ALDLL+ L ++ L +L TRIGMTVN LRK+S +DEV++LAK+LIK WKK +P + GG + ++ D G D+ +N G++EG GS+ D+ + K T D +RL+CRE+LS +L E+PEG A EE+A +EDA+F++F +T ++YKN+IRSRV NLKD +NP LR+NVL G+I+ ++ + M+AEEMAS ++K+ R+ K+ I+ Q+AK GT TDL +CGKC+K NCTYNQ+QTRSADEPMTTFVYCN+CGNRWKFC Sbjct: 4 EDEVFKIGKKLDKLVSS---ETSEHTTALDLLKALRDTKMTLEVLQKTRIGMTVNNLRKASNNDEVVSLAKTLIKNWKKLLPADSPGGMSRTTSRSSGDAGSQKMDETSNDGTEEGKSDGSSGDKDTERDSSSKLANTADAIRLKCRELLSNALKS-SEIPEG-AHDPEELAAAVEDAIFEEFNNTEVKYKNRIRSRVANLKDSRNPQLRQNVLIGLISAQRIAAMSAEEMASTEMKQLREKLTKEAINDHQMAKTGGTATDLFKCGKCRKNNCTYNQVQTRSADEPMTTFVYCNECGNRWKFC 302
BLAST of transcription elongation factor s-ii vs. nr
Match: gi|1069788509|ref|XP_018319541.1| (PREDICTED: transcription elongation factor S-II [Agrilus planipennis]) HSP 1 Score: 299.671 bits (766), Expect = 4.509e-98 Identity = 158/300 (52.67%), Postives = 212/300 (70.67%), Query Frame = 0 Query: 1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300 +E+EV+ ++K+L K T + Q ALD+L+ L L +NL +LT TRIGMTVNALRKSS+DDEVI+LAK+LIK WKK++ +N+ + + + K +DDK + L P + T D VRL+CREML+ +LT + E EG A T EE+A+ +E+A+F++FK+T MRYKN+IRSR+ NLKD KNP LR N G I+ + +TMTAEEMA++++K+ R+ F K+ I+ +QLA +GT TDLL+CGKCKKRNCTYNQ+QTRSADEPMTTFV CN+CGNRWKFC Sbjct: 4 VEEEVLRIQKKLNKMTSSDG---TGQEQALDILKELQTLDINLEVLTKTRIGMTVNALRKSSKDDEVISLAKTLIKNWKKFLSASNSTKESSNTSSSKVSKKEGRDDKKESKERDKEKDSRKLPNQFPPTSSTTTDAVRLKCREMLAAALTVDREEFEGCA-TAEELAEELEEAIFQEFKNTDMRYKNRIRSRIANLKDAKNPNLRTNFRVGAISASRLATMTAEEMANDEIKQLREKFKKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 299
BLAST of transcription elongation factor s-ii vs. nr
Match: gi|1173913320|gb|OQR75926.1| (transcription elongation factor S-II-like [Tropilaelaps mercedesae]) HSP 1 Score: 297.36 bits (760), Expect = 5.429e-97 Identity = 162/315 (51.43%), Postives = 210/315 (66.67%), Query Frame = 0 Query: 2 EDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKD----DKTNGSQEGGSAQDEFLTQGLPCK-----------AQATGDEVRLRCREMLSKSLTGEGELPEGMAQT-VEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300 E+EV+++ K L+K G +Q ALD+L+ L L + L IL TRIGMTVN+LRKSS DD+VI+LAK+LIK WKK + T A GD++ T GG KD DK+ G +GG Q++ T+ P A T D VRL+CRE+L+ +L G G LPEG +++A +IE F +F +T M+YKN+IRSRV NLKD KNP LR VL G I+PE+ + MTAEEMAS+++K+ RQ K+ ID Q+A GT TDLL+CGKC+K NCTYNQ+QTRSADEPMTTFV+CN+CG+RWKFC Sbjct: 4 EEEVLKIGKGLDKMVSAGPS---EQGQALDMLKQLQSLPITLEILQKTRIGMTVNSLRKSSNDDDVISLAKTLIKNWKKLLGSTPAKGDESSGGT----GGSTKDTSTKDKSKGQSQGGQPQNQ--TKAPPSSQAPPRQTSFPAAANTTDAVRLKCRELLAVALKGNG-LPEGCDDVDPDDLARHIESVCFDEFNNTDMKYKNRIRSRVANLKDPKNPNLRLAVLIGSISPERLAKMTAEEMASDELKQLRQKLTKEAIDDHQMAVTGGTKTDLLKCGKCRKSNCTYNQVQTRSADEPMTTFVFCNECGHRWKFC 308
BLAST of transcription elongation factor s-ii vs. nr
Match: gi|1339092529|ref|XP_023707478.1| (transcription elongation factor S-II [Cryptotermes secundus] >gi|1330914994|gb|PNF33794.1| Transcription elongation factor S-II [Cryptotermes secundus]) HSP 1 Score: 293.508 bits (750), Expect = 1.222e-95 Identity = 157/300 (52.33%), Postives = 217/300 (72.33%), Query Frame = 0 Query: 1 MEDEVMELRKQLEKCTPNGEHPEPDQSSALDLLQTLSRLRVNLNILTTTRIGMTVNALRKSSRDDEVITLAKSLIKTWKKYVPETNAGGDKAKDKTKKDEGGPAKDDKTNGSQEGGSAQDEFLTQGLPCKAQATGDEVRLRCREMLSKSLTGEGELPEGMAQTVEEIADYIEDALFKKFKDTGMRYKNQIRSRVFNLKDKKNPALRENVLTGVIAPEKFSTMTAEEMASEDVKKQRQSFIKQGIDASQLAKAEGTHTDLLQCGKCKKRNCTYNQIQTRSADEPMTTFVYCNDCGNRWKFC 300 +E+EVM ++K+L K + +G+ Q AL+LL+ L +L VNL +LT TRIGMTVNALRKSS DDEVI+L+K+LIK WKK++ N +KD + K++K + +++ + P + T D VRL+CRE+LS ++ G+GE+PEG A + E++A+ +E+A++++F++T MRYKN++RSRV NLKD KNP LR N L GVI + + MTAEEMAS+++K R F+K+ I+ +QLA +GT TDLL+CGKCKKRNCTYNQ+QTRSADEPMTTFV CN+CGNRWKFC Sbjct: 3 VEEEVMRIQKKLNKMS-SGDGT--GQEQALELLKVLQKLPVNLEVLTKTRIGMTVNALRKSSSDDEVISLSKTLIKNWKKFLSGPNT--PNSKDTAGSSKKSKEKEEKPRELELKDKEKEKKMPTTFPPVSSNTTDAVRLKCRELLSTAVRGDGEIPEGCA-SPEDLAEELEEAIYQEFRNTDMRYKNRVRSRVANLKDTKNPGLRMNFLVGVIPASRLAVMTAEEMASDEMKSLRNKFLKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVMCNECGNRWKFC 296 The following BLAST results are available for this feature:
BLAST of transcription elongation factor s-ii vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 3
BLAST of transcription elongation factor s-ii vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of transcription elongation factor s-ii vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold158_size296719:96082..101936+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold158_size296719-snap-gene-1.16 ID=maker-scaffold158_size296719-snap-gene-1.16|Name=transcription elongation factor s-ii|organism=Tigriopus kingsejongensis|type=gene|length=5855bp|location=Sequence derived from alignment at scaffold158_size296719:96082..101936+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'transcription elongation factor s-ii' has the following synonyms
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