retinoid x receptor, maker-scaffold192_size271026-snap-gene-1.22 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000012486 (supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1 gene:EMLSAG00000012486 transcript:EMLSAT00000012486 description:"maker-LSalAtl2s91-snap-gene-4.8") HSP 1 Score: 115.161 bits (287), Expect = 6.304e-28 Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 0 Query: 68 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMR 134 C +CGDRASG+HYG SCEGCKGFFKR++RK+L Y CR NK C + K RNRCQYCR KCLA GMR Sbjct: 220 CVVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 286 HSP 2 Score: 59.6918 bits (143), Expect = 8.692e-10 Identity = 53/179 (29.61%), Postives = 89/179 (49.72%), Query Frame = 0 Query: 212 KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAG---CAFRSMNQEDGILWADSQF---IKRENAHLAGVGDIFDRV--LVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382 ++L V W + IP F L E ++ L+R W+++ + G C+ +SMN + + S + +E V + + + E V M +M + E L+AI LF D G+ +++ R+K + L+EYC +++ +RF+ LLLRL LRS+ +E LFF LI Sbjct: 485 RLLFLSVHWVRTIPCFGQLSYESQVGLVRNSWSDIFVLGMSQCS-KSMNLQSILTAIVSHLQTSVSQERLSATRVRQVTSTICKVQEYVRTMSKMCITDHEYAYLKAISLFGADQVGISSGK--KIDKLRQKTVSELKEYCTL--QDDENRFSNLLLRLSPLRSLQPDILEELFFAGLI 658
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53") HSP 1 Score: 111.694 bits (278), Expect = 8.640e-27 Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 0 Query: 67 FCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGG 146 C IC DRA+G HYG+ +CEGCKGFFKRTV+ + +Y C + C I+K QRNRCQYCR+ KCL GM AV+E+R GG Sbjct: 282 VCMICEDRATGLHYGIITCEGCKGFFKRTVQNKRIYTCVADGECEINKAQRNRCQYCRFQKCLQKGMVLAAVREDRMPGG 361
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000000733 (supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 gene:EMLSAG00000000733 transcript:EMLSAT00000000733 description:"maker-LSalAtl2s1117-snap-gene-1.23") HSP 1 Score: 100.523 bits (249), Expect = 3.817e-23 Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 0 Query: 68 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREA 137 C +CGD++SG HYGV +CEGCKGFF+R+ + Y C K CI+D+ RNRCQ+CR KCLA GM R+ Sbjct: 47 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRQKNCIVDRVNRNRCQFCRLQKCLALGMSRDG 116
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000007741 (supercontig:LSalAtl2s:LSalAtl2s450:172104:174744:-1 gene:EMLSAG00000007741 transcript:EMLSAT00000007741 description:"maker-LSalAtl2s450-snap-gene-2.9") HSP 1 Score: 100.523 bits (249), Expect = 4.566e-23 Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 68 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKA----CIIDKRQRNRCQYCRYMKCLATGMRREAVQEER 142 C +CGDR+SGKHYG+YSC+GC GFFKR++ ++ +Y C+ C IDK RN+C+ CR KC M ++AVQ ER Sbjct: 108 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRQRIYTCKAQGEFKGRCPIDKTHRNQCRACRLKKCFDCSMNKDAVQHER 186 HSP 2 Score: 86.6557 bits (213), Expect = 1.368e-18 Identity = 55/208 (26.44%), Postives = 96/208 (46.15%), Query Frame = 0 Query: 188 SRQESDDLQAHMPGGFDGDQP----NKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVL-------VELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 S + D+ H P F P ++L V W K + F L +D++ L++ W +L + + + I W S + +A L D+ D V+ E++ + +++ D E G L+AI+LF P+ GL + VE +++ L +Y R + +P+RF +LLL +P LR I +E+ FF + + D Sbjct: 412 SVSKEDEESEHPPSSFSPTWPMLQETTARLLFMAVRWVKCLAPFQTLSSKDQLLLLQESWKDLFLMHLS------QWAIPWDLSNLLLSRHASLVDRSDVEDHVVDMEIKTVQEIMCRFRQLSPDGTECGXLKAIVLFKPETAGL--NDFHPVEMLQDQAQCILGDYVRNRYSRQPTRFGRLLLAIPLLRMIRANTIENFFFRETVGD 611
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7") HSP 1 Score: 98.5969 bits (244), Expect = 8.149e-23 Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 0 Query: 68 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENK--ACIIDKRQRNRCQYCRYMKCLATGMRREAVQEER 142 C +C D +SGKHYG+++C+GC GFFKR++R+ +Y C+ +C++DK RN+C+ CR +C+ GM ++AVQ ER Sbjct: 34 CKVCTDHSSGKHYGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHER 110 HSP 2 Score: 82.8037 bits (203), Expect = 1.606e-17 Identity = 53/175 (30.29%), Postives = 90/175 (51.43%), Query Frame = 0 Query: 212 KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQ----VESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382 ++L V WA+++P FT L D++ L+ W EL + A ++ E + ++ ++ + ++ + E + K + M++D E CLRAIILF LE++ L+ + S +++ TL +Y + +P RF KLLL LP+LRS+ +E LFF K I Sbjct: 250 RLLFMNVRWAQNVPAFTSLPYRDQLLLLEESWRELFLLSSAQFNLPVE---------LVASQDKSISVLSEL--KNFQEAIAKFQSMQVDTTEFACLRAIILFK---TVLEEEKELRDTSSITSLQDQAQLTLSKYISXAYPGQPMRFGKLLLLLPSLRSVSGNVIEELFFKKTI 410
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000003771 (supercontig:LSalAtl2s:LSalAtl2s2039:3647:12796:1 gene:EMLSAG00000003771 transcript:EMLSAT00000003771 description:"maker-LSalAtl2s2039-snap-gene-0.4") HSP 1 Score: 84.3445 bits (207), Expect = 8.151e-18 Identity = 79/326 (24.23%), Postives = 138/326 (42.33%), Query Frame = 0 Query: 89 KGFFKRTVRKELVY-ACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEER--NRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKM---LQQLVEWAKHIP-------HFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQED------GILWADSQFIKRENAHLAGVGD---IFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGA 392 +GFF+R++++++ Y C +N+ C I + RNRCQYCR KC+A+GM R+AV+ R R K A + T + EM+ D + E + +AH +D K KM L + E ++P T I + L C + + + ++ + I++E + G+ + D V EL ++ + + AE+G ++++ PD GL ++P L V+ + K+ L H + P F++LL + LR++ E F K K D + G+ Sbjct: 17 QGFFRRSIQQKIQYRPCTKNQQCNIQRINRNRCQYCRLKKCIASGMSRDAVRFGRVPKREKAKIFSAMQSSRMKTQEANVLSEMSDDXKIIEEIV---------------RAH----YDNXDYTKNKMEPFLAKAKENPVYVPCTGMVSQGMTKGGIFKNNNIFHRHLPSLYNVSCVYLKVQTNNFFSPLQSLVCLNGDIIRKETINQLAAGNAKFLMDSVF-ELAQRLNQFNLSDAEIGIFCSVVIITPDRPGL-RNPEL-VQKIQNKLKNILNNILIPQHSDSPGIFSELLSMVHDLRTLNTLHTEK--FLKQCKIDRSDMGGS 318
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000011488 (supercontig:LSalAtl2s:LSalAtl2s794:281844:292908:-1 gene:EMLSAG00000011488 transcript:EMLSAT00000011488 description:"maker-LSalAtl2s794-snap-gene-2.22") HSP 1 Score: 81.6481 bits (200), Expect = 2.716e-17 Identity = 56/181 (30.94%), Postives = 89/181 (49.17%), Query Frame = 0 Query: 212 KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRS--MNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYC--RTNHENEPS------RFAKLLLRLPALRSIGLKCVEHLFFYKLI 382 K+L +V WAK +P F + + D+ L+R W+ L I G A + +N+E +L + + N + + ++V K+++ +D E L+A+ILF+P+ L + QVE +++ LEEYC N N+P RF KLLL + I K VE LFF K + Sbjct: 165 KLLFTVVHWAKSVPSFVEFSVNDQNVLLREAWSRLFILGTAQWAILINEEKLMLNCEEKSKDHTNLLFHHA-----KKMTKIVQKIRDQNLDYNEYTILKALILFSPEGNNLIESH--QVEKLQDQTLIMLEEYCSHNDNRVNKPKYTFNLRRFGKLLLAFSNIFQITSKDVESLFFQKTL 338 HSP 2 Score: 56.225 bits (134), Expect = 6.043e-9 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0 Query: 99 ELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEER 142 +L Y C+ N C ID +RN+CQ CR+ KCL M++EAVQ+ER Sbjct: 1 KLDYVCKGNGNCTIDVARRNQCQSCRFKKCLMVKMKKEAVQQER 44
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 78.9518 bits (193), Expect = 3.130e-16 Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0 Query: 68 CSICGDRASGK-HYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAG 163 C++CGD+A HYG +C C+ FF+R+V K Y C ++AC+I R CQ+CRY KCL +GM+ V E + + +++ G Sbjct: 91 CNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRKNKTTCGKN 187
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000005619 (supercontig:LSalAtl2s:LSalAtl2s301:354064:356113:1 gene:EMLSAG00000005619 transcript:EMLSAT00000005619 description:"maker-LSalAtl2s301-augustus-gene-3.7") HSP 1 Score: 78.9518 bits (193), Expect = 3.668e-16 Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 0 Query: 65 KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKE-LVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHK 148 C +C + A+G H+G ++CEGCK FF RT + ++ C+ N C++DK+ R C+ CR KC+ GM + + R K Sbjct: 54 NQLCRVCEEPAAGFHFGAFTCEGCKSFFGRTCNNQSVIQECKNNYRCVVDKKNRTACKACRLRKCIMVGMSKSGSRYGRRSNWFK 138
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4") HSP 1 Score: 72.7886 bits (177), Expect = 3.589e-15 Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 0 Query: 66 HFCSICGDRASGKHYGVYSCEGCKGFFKRTVRK---ELVYACRENKACIIDKRQRNRCQYCRYMKCLATGM 133 C +C + A+G H+G ++CEGCK FF RT K + C+ N +C+IDK+ R C+ CR KCL GM Sbjct: 36 QICRVCDEPAAGYHFGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGM 106
BLAST of retinoid x receptor vs. SwissProt
Match: gi|133701|sp|P19793.1|RXRA_HUMAN (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha) HSP 1 Score: 391.349 bits (1004), Expect = 1.941e-132 Identity = 207/377 (54.91%), Postives = 261/377 (69.23%), Query Frame = 0 Query: 17 TPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNK---------RKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 +P L+ +P S ++KP + L + L P P+ + S +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER RG + VES++ A +M ++RI+ AE A + ++A+M G + PN K L LVEWAK IPHF++L ++D++ L+RAGWNELLIA + RS+ +DGIL A + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL +PA +VE+ REKVYA+LE YC+ + +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 91 SPQLSSPMNPVSSSEDIKPPLGL-----NGVLKVPAHPSGNM--ASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENE---VESTSSA---NEDMPVERILEAEL------AVEPKTETYVEANM--GLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL-SNPA-EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 444
BLAST of retinoid x receptor vs. SwissProt
Match: gi|133702|sp|P28700.1|RXRA_MOUSE (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha) HSP 1 Score: 390.193 bits (1001), Expect = 6.478e-132 Identity = 210/385 (54.55%), Postives = 262/385 (68.05%), Query Frame = 0 Query: 14 VPPTPPLA-GLAHP----PQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNK---------RKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 VP TP L G P P +P+ D+ L + L P P+ + S +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER RG + VES++ A +M +++I+ AE A + ++A+M G + PN K L LVEWAK IPHF++L ++D++ L+RAGWNELLIA + RS+ +DGIL A + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL +PA +VE+ REKVYA+LE YC+ + +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 84 VPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPLGLNG-VLKVPAHPSGNM--ASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENE---VESTSSA---NEDMPVEKILEAEL------AVEPKTETYVEANM--GLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL-SNPA-EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 449
BLAST of retinoid x receptor vs. SwissProt
Match: gi|147732610|sp|A2T929.2|RXRAA_DANRE (RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName: Full=Nuclear receptor subfamily 2 group B member 1-A; AltName: Full=RXRalpha-B; AltName: Full=Retinoid X receptor alpha-A) HSP 1 Score: 388.267 bits (996), Expect = 1.117e-131 Identity = 208/387 (53.75%), Postives = 258/387 (66.67%), Query Frame = 0 Query: 7 HSLMEGGV----PPTPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNK-----RKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 HS+ GV +P L + S ++KP + L PA P T PLS +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER R + + VES++ A +M +++I+ AE E + + MP D K L LVEWAK IPHF++L ++D++ L+RAGWNELLIA + RS+ +DGIL A + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL +P +VE+ REKVYA+LE YC+ + +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 45 HSMASPGVGYGPSISPQLNSHMNSVSSSEDIKPPLGLNGVMKVPAQPSGT-------PLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKER---SENEVESTSSA---NEDMPVEKILEAELAVEP----KTETYIETNVPMPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL-SNPG-EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 412
BLAST of retinoid x receptor vs. SwissProt
Match: gi|464702|sp|Q05343.1|RXRA_RAT (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha) HSP 1 Score: 388.652 bits (997), Expect = 2.189e-131 Identity = 211/389 (54.24%), Postives = 264/389 (67.87%), Query Frame = 0 Query: 14 VPPTPPLAGLAHPPQ--SPL-------ELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNK---------RKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 VP TP L PQ SP+ ++KP + L + L P P+ + S +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER RG + VES++ A +M +++I+ AE A + ++A+M G + PN K L LVEWAK IPHF++L ++D++ L+RAGWNELLIA + RS+ +DGIL A + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL +PA +VE+ REKVYA+LE YC+ + +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 84 VPTTPTLGFETGSPQLNSPMNPVSSSEDIKPPLGL-----NGVLKVPAHPSGNMS--SFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENE---VESTSSA---NEDMPVEKILEAEL------AVEPKTETYVEANM--GLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL-SNPA-EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 449
BLAST of retinoid x receptor vs. SwissProt
Match: gi|1710719|sp|P51128.1|RXRA_XENLA (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha) HSP 1 Score: 388.267 bits (996), Expect = 7.386e-131 Identity = 193/324 (59.57%), Postives = 235/324 (72.53%), Query Frame = 0 Query: 62 SGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGG-FDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 S +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR++K C+IDKRQRNRCQYCRY KCLA GM+REAVQEER RG + VESS A +M +++I+ AEH E + + L + P K L LVEWAK IPHF++L ++D++ L+RAGWNELLIA + RS+ +DGIL A + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL L+VE+ REKVYA+LE YC+ + +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 155 SFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERNENE---VESSNSA---NEDMPVEKILEAEHAVEPKTETYTEANMGLAPNSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSN--PLEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 470
BLAST of retinoid x receptor vs. SwissProt
Match: gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE (RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName: Full=Nuclear receptor subfamily 2 group B member 3-B; AltName: Full=Retinoid X receptor gamma-B) HSP 1 Score: 386.341 bits (991), Expect = 1.185e-130 Identity = 191/325 (58.77%), Postives = 231/325 (71.08%), Query Frame = 0 Query: 60 PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 P S SKH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y CR+ K C+IDKRQRNRCQYCRY KCLA GM+REAVQEER RG K E +M +D+I+ AE E + S + P +K+ L LVEWAK IPHF+DL ++D++ L+RAGWNELLIA + RS+ +DGIL + R +AH AGVG IF+RVL ELV KMK+M+MDK ELGCLRAI+LFNPDAKGL +L+VE+ REKVYA+LE Y + + ++P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 120 PGSLSKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDIKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKEKSDTEVE------TTSRFNEDMPVDKILDAELSVEPKTETYTESSPSNSTNDPVTNICHAADKQ--LFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGILLGTGLHVHRSSAHSAGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSN--SLEVEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 434
BLAST of retinoid x receptor vs. SwissProt
Match: gi|52788288|sp|Q90416.2|RXRGA_DANRE (RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName: Full=Nuclear receptor subfamily 2 group B member 3-A; AltName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Retinoid X receptor alpha; AltName: Full=Retinoid X receptor gamma-A) HSP 1 Score: 384.415 bits (986), Expect = 4.324e-130 Identity = 197/330 (59.70%), Postives = 241/330 (73.03%), Query Frame = 0 Query: 58 YP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 YP P S SKH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y CR+NK C IDKRQRNRCQYCRY KCLA GM+REAVQEER RG + + V+SS+ EM +++I+ AE E + S + P +K+ L LVEWAK IPHF+DL ++D++ L+RAGWNELLIA + RS+ +DGIL A + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPDAKGL +P+ +VE+ REKVYA+LE Y + N+ ++P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 104 YPCGSPGSLSKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRER---SDNEVDSSS---SFNEEMPVEKILDAELAVEPKTEAYMESSMSNSTNDPVTNICQAADKQ--LFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGL-SNPS-EVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 423
BLAST of retinoid x receptor vs. SwissProt
Match: gi|52783417|sp|Q90415.1|RXRAB_DANRE (RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName: Full=Nuclear receptor subfamily 2 group B member 1-B; AltName: Full=Retinoid X receptor alpha-B) HSP 1 Score: 379.793 bits (974), Expect = 3.947e-129 Identity = 193/325 (59.38%), Postives = 237/325 (72.92%), Query Frame = 0 Query: 61 LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGG-FDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 LS +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER R A E E+ G G +M +++I+ AE E + + A+ P K L LVEWAK IPHF+DL ++D++ L+RAGWNELLIA + RS+ +DGIL A + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL +P+ +VE+ RE+VYA+LE YC+ + ++P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 47 LSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR-------AKERSEAEFG-GCANEDMPVEKILEAELAVEPKTETYVEANLSPSANSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL-SNPS-EVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 361
BLAST of retinoid x receptor vs. SwissProt
Match: gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE (RecName: Full=Retinoic acid receptor RXR-beta-A; AltName: Full=Nuclear receptor subfamily 2 group B member 2-A; AltName: Full=Retinoid X receptor beta-A) HSP 1 Score: 376.711 bits (966), Expect = 1.288e-126 Identity = 207/396 (52.27%), Postives = 253/396 (63.89%), Query Frame = 0 Query: 17 TPPLAGLAHPPQSPLELKPDVSLL-LNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRG----GHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNK---------RKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAG--------------VGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 T ++GL H S ++KP L L++HSP P+ K C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C++DKRQRNRCQYCRY KCLA GM+RE VQ+ER R + E VESS+ A EM +++I+ AE EQ + H G G PN K L LVEWAK IPHF++L ++D++ L+RAGWNELLIA + RS+ +DGIL A + R +AH AG VG IFDRVL ELV KM++M+MDK ELGCLRAIILFNPDAKGL P+ +VE REKVYA+LE YC+ + ++ RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 86 TVSMSGL-HAVSSSDDVKPPFGLKPLSSHSPG------------PMVSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERDGEVESSSAA---NEEMPVEKILEAEMAVEQ----------KTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLS-SPS-EVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 453
BLAST of retinoid x receptor vs. SwissProt
Match: gi|62900941|sp|Q5TJF7.1|RXRB_CANFA (RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=Nuclear receptor subfamily 2 group B member 2; AltName: Full=Retinoid X receptor beta) HSP 1 Score: 372.089 bits (954), Expect = 5.909e-124 Identity = 193/326 (59.20%), Postives = 230/326 (70.55%), Query Frame = 0 Query: 65 KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKR------KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 K C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y+CR+NK C +DKRQRNRCQYCRY KCLATGM+REAVQEER RG K + + EM +DRI+ AE EQ S Q + G + P K L LVEWAK IPHF+ L ++D++ L+RAGWNELLIA + RS++ DGIL A + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAIILFNPDAKGL +P+ +VE REKVYA+LE YC+ + + RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 202 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-------EMPVDRILEAELAVEQK---SDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLS-NPS-EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 515
BLAST of retinoid x receptor vs. nr
Match: gi|657600368|gb|AID52845.1| (ultraspiracle [Tigriopus japonicus]) HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0 Identity = 346/436 (79.36%), Postives = 366/436 (83.94%), Query Frame = 0 Query: 7 HSLMEGGVPPTPPLAGLAHP------PQSPLELKPDVSLLLNAHSPA------------LPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAE-----------PVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNG-ADVNDVAAQSLELFIKEILEE 412 + LME P G P PQSPLELKPDVS+LLNA SPA PRP SP+V+YPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRENK CIIDKRQRNRCQYCRYMKCLA GMRREAVQEERNR G + A VESST G +M I+RI+ AE+ISE GGAFSR++S+DLQAHM GGF+GDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMN+E+GILWADSQFIKRENAHLAGVGDIFDRVLVELV KM+EMKMDKAELGCLRAIILFNPDAKGLEQ PAL+VE+FREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPN NG ADVNDVAAQSL++FIKEILEE Sbjct: 14 NGLMESAGVPAAASVGANTPSNAFGNPQSPLELKPDVSMLLNAPSPASSVSGGGLANPQTPRPGSPSVNYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENKDCIIDKRQRNRCQYCRYMKCLANGMRREAVQEERNRSGSSASGGANNGGGTGVGKEGEVESSTPGGQTSSDMPIERIIEAENISELGGAFSRKDSEDLQAHMTGGFEGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNEENGILWADSQFIKRENAHLAGVGDIFDRVLVELVQKMREMKMDKAELGCLRAIILFNPDAKGLEQGPALEVETFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNSNGAADVNDVAAQSLDIFIKEILEE 449
BLAST of retinoid x receptor vs. nr
Match: gi|662179194|gb|AIE45497.1| (retinoid X receptor [Lepeophtheirus salmonis]) HSP 1 Score: 467.233 bits (1201), Expect = 3.806e-160 Identity = 257/451 (56.98%), Postives = 301/451 (66.74%), Query Frame = 0 Query: 14 VPPTPP-LAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTS----------------PAVH-------------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRG------------GHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISE---QGGAFSRQESDDLQAHMPGGFDGDQPN----KRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILEE 412 PPTP L + PQSP++LKPD SLLL S P S P VH YPP LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACREN+ C+IDKRQRNRCQYCRYMKCL TGM+REAVQEER+RG + + +E VESST G GG+M I+RI+ AE + E F +++ + D + K++++ QL+EWAK +PHF++LK+ED++ LIR GWNELL+AG AFRS+ DGIL + + RENAH AGVG IFDRVLVEL+ KMKEM+MDKAELGCLRAIILFNPDAKGL +VE+ REKVYATLEEY R+ HENEPSRFAKLLLRLPALRSIGLKC+EHLFFYKL+ D +GN LE FI+ +LEE Sbjct: 4 TPPTPNHLLNPGYMPQSPVDLKPDASLLLTTLSNPQSTPPSSAYPVGESMYGSQAPHPGVHGHARSTQSPPNNTYPPNHPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHRGSNGPNHNNNNNNNNNNSRNSEEVESSTSGG--GGDMPIERIIEAEDVGEMKQDTSEFLLLDNNSSMSGGGSIGDMEIQRFGLAKKRIIHQLIEWAKLVPHFSELKVEDQVTLIRGGWNELLVAGLAFRSIKLNDGILLGNGTIVTRENAHEAGVGHIFDRVLVELIAKMKEMQMDKAELGCLRAIILFNPDAKGLSD--VTKVENLREKVYATLEEYTRSVHENEPSRFAKLLLRLPALRSIGLKCLEHLFFYKLVGDYLNDGN----------PLEKFIQSLLEE 440
BLAST of retinoid x receptor vs. nr
Match: gi|1110961970|gb|APG80612.1| (ultraspiracle [Paracyclopina nana]) HSP 1 Score: 429.869 bits (1104), Expect = 1.569e-145 Identity = 233/427 (54.57%), Postives = 282/427 (66.04%), Query Frame = 0 Query: 21 AGLAHPPQSPLELKPDVSLLLNAHSPA--------------LPRPTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLG-----------------GEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMN-QEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILEE 412 G P SP E KPD L+ +SP L R +SP +YPP L+ SKH C+ICGD+ASGKHYGVYSCEGCKGFFKRTVRKEL YACREN+ CIIDKRQRNRCQYCRYMKCL TGM+REAVQEER+RG A V STGA LG +M +DRI+ ++ SE+ G + AH G PN + Q+VE+AK++P F DL ++ +I LI++GWNEL+I G A+RSM+ E+GIL + I E+AH AG+G+IFDRVL+ELVGKM+EMKM+K EL CLRAI+LFNPDA GL D + QVE+ REKVYATLEE+CRT HE + SRFAKLLLRLPALRSIGLKC EH FF+KL+++D D N ++E FIK LEE Sbjct: 15 GGYDDQPNSPAEQKPDPMALMRGYSPGGSPGSTMTAGSPGGLVRSSSP--NYPPNHPLANSKHLCTICGDKASGKHYGVYSCEGCKGFFKRTVRKELSYACRENRNCIIDKRQRNRCQYCRYMKCLQTGMKREAVQEERSRGKESTGSAGGQV--STGAKELGQVANGIKEELPETTCTNSDMPLDRILESQVKSEKAG----ENPGAHPAHQAFNATGGDPNS-SIFAQIVEFAKNLPLFPDLSLDTQITLIKSGWNELMILGAAYRSMSLNEEGILMGQGKIITMEDAHRAGLGEIFDRVLIELVGKMEEMKMEKCELACLRAIVLFNPDAPGLTNDASNQVETLREKVYATLEEHCRTRHEKDTSRFAKLLLRLPALRSIGLKCAEHHFFFKLVREDRTMFEMDDGN----SAMETFIKNFLEE 428
BLAST of retinoid x receptor vs. nr
Match: gi|105872963|gb|ABF74729.1| (retinoid X receptor-like protein [Daphnia magna] >gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna] >gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex] >gi|1022761776|gb|KZS07689.1| Retinoic acid receptor RXR-alpha-A [Daphnia magna]) HSP 1 Score: 422.165 bits (1084), Expect = 5.164e-143 Identity = 224/393 (57.00%), Postives = 266/393 (67.68%), Query Frame = 0 Query: 27 PQSPLELKPDVSLLLNAHSP------------------ALPRPT--------------SPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 PQSP+++KPD + L+ SP +LP+P+ S + HYPP LS SKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE++ C+IDKRQRNRCQYCRY KCL GM+REAVQEER R KG ++ +GG G+M IDR++ AE E + ++ D K L QLVEWAKHIPHFT+L ++D++ L+RAGWNELLIA + RS+ +DGI+ A I R +AH AGVG IFDRVL ELV KM+EMK+D AELGCLRAIILFNPD KGL+ QVE+ REKVYATLEEY RTN+ +EP RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 6 PQSPIDMKPDTATLMAGFSPGSVGGGNSPTSPRSGLGFSLPQPSFTIGHSGYLNNSNGSKSGHYPPNHPLSNSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDKRQRNRCQYCRYQKCLQMGMKREAVQEERQRNKEKGE-----MDMDATSGG-QGDMPIDRVLEAEKRVECKDEPQVNSATAALGNICAATD-------KQLFQLVEWAKHIPHFTELPLDDQVVLLRAGWNELLIAAFSHRSVGVKDGIVLATGLVIHRNSAHQAGVGSIFDRVLTELVSKMREMKLDLAELGCLRAIILFNPDPKGLKS--VSQVEALREKVYATLEEYTRTNYADEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 383
BLAST of retinoid x receptor vs. nr
Match: gi|314955486|gb|ADT64884.1| (retinoid X receptor [Gryllus firmus]) HSP 1 Score: 420.624 bits (1080), Expect = 2.905e-142 Identity = 223/379 (58.84%), Postives = 263/379 (69.39%), Query Frame = 0 Query: 27 PQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 PQSPL++KPD + L+++ S + +S ++ YPP LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL GM+REAVQEER R KG EA VES++ L +M ++RI+ AE E + + + + NK+ L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA + RSM +DGI+ A I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+ +VE REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D Sbjct: 18 PQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386
BLAST of retinoid x receptor vs. nr
Match: gi|314955556|gb|ADT64885.1| (retinoid X receptor [Gryllus firmus]) HSP 1 Score: 420.624 bits (1080), Expect = 3.001e-142 Identity = 226/396 (57.07%), Postives = 267/396 (67.42%), Query Frame = 0 Query: 10 MEGGVPPTPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 MEG + PQSPL++KPD + L+++ S + +S ++ YPP LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL GM+REAVQEER R KG EA VES++ L +M ++RI+ AE E + + + + NK+ L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA + RSM +DGI+ A I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+ +VE REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D Sbjct: 1 MEGSAGGITLDGSIMGGPQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386
BLAST of retinoid x receptor vs. nr
Match: gi|302202572|gb|ADL09403.1| (retinoid X receptor [Gryllus firmus]) HSP 1 Score: 418.698 bits (1075), Expect = 1.381e-141 Identity = 222/379 (58.58%), Postives = 263/379 (69.39%), Query Frame = 0 Query: 27 PQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 PQSPL++KPD + L+++ S + +S ++ YPP LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K CIIDKRQRNRCQYCRY KCL GM+REAVQEER R KG EA VES++ L +M ++RI+ AE E + + + + NK+ L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA + RSM +DGI+ A I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+ +VE REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D Sbjct: 18 PQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386
BLAST of retinoid x receptor vs. nr
Match: gi|227150229|gb|ACP19739.1| (putative retinoid X receptor [Calanus finmarchicus]) HSP 1 Score: 416.001 bits (1068), Expect = 1.681e-140 Identity = 227/395 (57.47%), Postives = 270/395 (68.35%), Query Frame = 0 Query: 27 PQSPLELKPDVSLLLNAH-SPALPR-PTSPAVH------------------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAA-EPVESSTGAGGLG-GEMAIDRIVAAEHISEQGGAFS-RQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVN 395 PQSP+E+KPD SLL + SP + + PTS + YPP LSG+KH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE+K C+IDKRQRNRCQ+CRY KC+A GM+REAVQEER RG + VE S LG G+M DRI+ AE I ++ E DD+QA + K L LVEWAK IPHFT L ++D++ L+R GWNEL+IAG + RS+ ++GI A + RENAH +GVG IFDRVLVELV KM EM MDK ELG LRAI+L+NPD KGL +D A +VE RE+VYA+LEEY R+ HENE RFAKLLLRLPALRSIGLKC+EHLFF+K+I G +G G D + Sbjct: 17 PQSPMEMKPDTSLLTTVNNSPMMSQSPTSASTSFMGFGSPGGGQKSPLPGTYPPSHPLSGAKHMCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREDKQCLIDKRQRNRCQFCRYNKCMAMGMKREAVQEERQRGSRGDKNGGDDEVEGSV----LGPGDMPTDRILEAERICDKHEREQLTNEGDDIQAKFKFAAE-------KQLTSLVEWAKQIPHFTSLCLDDQVALLRGGWNELMIAGFSHRSIGIQNGIQLASGVVVTRENAHTSGVGAIFDRVLVELVSKMTEMCMDKTELGSLRAIVLYNPDVKGL-KDIA-RVEQLRERVYASLEEYTRSTHENETGRFAKLLLRLPALRSIGLKCMEHLFFFKII---GESGAGLDAH 395
BLAST of retinoid x receptor vs. nr
Match: gi|314955738|gb|ADT64886.1| (retinoid X receptor, partial [Gryllus firmus]) HSP 1 Score: 410.994 bits (1055), Expect = 3.533e-139 Identity = 212/332 (63.86%), Postives = 243/332 (73.19%), Query Frame = 0 Query: 56 VHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 + YPP LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL GM+REAVQEER R KG EA VES++ L +M ++RI+ AE E + + + + NK+ L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA + RSM +DGI+ A I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+ +VE REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D Sbjct: 20 IQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 341
BLAST of retinoid x receptor vs. nr
Match: gi|66864094|dbj|BAD99298.1| (ultraspiracle [Leptinotarsa decemlineata]) HSP 1 Score: 411.379 bits (1056), Expect = 5.120e-139 Identity = 218/406 (53.69%), Postives = 259/406 (63.79%), Query Frame = 0 Query: 27 PQSPLELKPDVSLL-------------------LNAHSPALPR--PTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411 PQSP+++KPD S L L + SP P+ P SP PLSGSKH CSICGD+ASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K C+IDKRQRNRCQYCRY KCL GM+REAVQEER R + A E S+ EM+I+R++ AE R E +D + K L QLVEWAK IPHFT L + D++ L+RAGWNELLIA + RSM ++GI+ A I + A GVG+I+DRVL ELV KMKEM+MDK ELGCLRAIIL+NPD +GL+ +VE REK+Y LEEY RT H NEP RFAKLLLRLPALRSIGLKC+EHLFF++LI D +++ FI E+LE Sbjct: 6 PQSPMDIKPDASTLQFSPQGPNSPGSFSLGHANLLSPSPGGPKGVPNSPYPPNHPLSGSKHLCSICGDKASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRTKDRDASEVESTSSNP------NEMSIERLLEAE---------KRVECNDPPVALENAVTNICQATNKQLLQLVEWAKLIPHFTSLPVSDQVLLLRAGWNELLIASFSHRSMQTQEGIILATGLTINKSTAQAVGVGNIYDRVLSELVNKMKEMRMDKTELGCLRAIILYNPDVRGLQS--TQEVEILREKIYENLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD---------------VTIDTFITEMLE 379 The following BLAST results are available for this feature:
BLAST of retinoid x receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of retinoid x receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of retinoid x receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold192_size271026:116203..123255- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold192_size271026-snap-gene-1.22 ID=maker-scaffold192_size271026-snap-gene-1.22|Name=retinoid x receptor|organism=Tigriopus kingsejongensis|type=gene|length=7053bp|location=Sequence derived from alignment at scaffold192_size271026:116203..123255- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'retinoid x receptor' has the following synonyms
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