retinoid x receptor, maker-scaffold192_size271026-snap-gene-1.22 (gene) Tigriopus kingsejongensis

Overview


Name	retinoid x receptor
Unique Name	maker-scaffold192_size271026-snap-gene-1.22
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19")

HSP 1 Score: 72.4034 bits (176), Expect = 4.917e-14
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 0

Query:   68 CSICGDRASGKH--YGVYSCEGCKGFFKRTVR----KELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGA 150
            C ICG+ A GKH  YG   C  C+ FF+R+V+    K+ +  C + K CII+ + R  CQ CR+ KC++ GMR   V  +R R   K A
Sbjct:  107 CQICGEVA-GKHVYYGGQCCTSCRAFFRRSVQNNSYKQFI-CCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKKSA 193

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3")

HSP 1 Score: 72.0182 bits (175), Expect = 6.069e-14
Identity = 31/72 (43.06%), Postives = 39/72 (54.17%), Query Frame = 0

Query:   68 CSICGDRASGK-HYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAV 138
            C IC D A+   HYG  +C  C+ FF+R V     Y C  +K C I K  R  CQ+CR+ KCL  GM+   V
Sbjct:   63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWV 134

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22")

HSP 1 Score: 66.2402 bits (160), Expect = 4.708e-12
Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 0

Query:   68 CSICGDRASGKH--YGVYSCEGCKGFFKRTVRK---ELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGA 150
            C ICG+ A GKH  YG   C  C+ FF+R+V+    +    C + + CII+ + R  CQ CR+ KC++ GMR   V  +  R   K A
Sbjct:  106 CQICGEVA-GKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSKKSA 192

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5")

HSP 1 Score: 62.3882 bits (150), Expect = 9.533e-11
Identity = 34/85 (40.00%), Postives = 42/85 (49.41%), Query Frame = 0

Query:   68 CSICGDRAS-GKHYGVYSCEGCKGFFKRTVRK--ELVYAC-----RENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNR 144
            C ICGD A    HYG  +C  C+ FF RTV K  +  + C      E+  C+I K  R  CQ+CRY  CL+ GM    V     R
Sbjct:  137 CRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000007233 (supercontig:LSalAtl2s:LSalAtl2s405:178614:197434:1 gene:EMLSAG00000007233 transcript:EMLSAT00000007233 description:"maker-LSalAtl2s405-snap-gene-2.21")

HSP 1 Score: 53.5286 bits (127), Expect = 4.188e-8
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0

Query:   99 ELVYACRENKA-CIIDKRQRNRCQYCRYMKCLATGMRREAVQEER 142
            +L+Y C+     C+IDK  RN+CQ CR  KCL  GM ++AVQ ER
Sbjct:   60 KLIYRCQAGTGMCVIDKAHRNQCQACRLRKCLHMGMNKDAVQNER 104

HSP 2 Score: 50.8322 bits (120), Expect = 3.352e-7
Identity = 43/155 (27.74%), Postives = 76/155 (49.03%), Query Frame = 0

Query:  236 IKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTN--------HENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            + L+   W+EL +      SM  E   L++    +     + + + +  D VL  ++G+ K   ++ AE  C++AI+LF P+ +GL +D AL VE+ +++    L  +  T          +   SRF +LLL L  LR      +E L+F ++I
Sbjct:  240 VTLLEESWSELFLLCAIQWSMPLEKPSLFS----LPNPELYPSEIVNYVD-VLTGILGRYKRTAVNPAEFACMKAILLFKPETQGL-KDHAL-VENLQDQALVMLNNHVETTLPGGGGGRGQLSSSRFGRLLLLLSNLRQSNSFKIEKLYFDRII 387

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|133701|sp|P19793.1|RXRA_HUMAN (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 391.349 bits (1004), Expect = 1.941e-132
Identity = 207/377 (54.91%), Postives = 261/377 (69.23%), Query Frame = 0

Query:   17 TPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNK---------RKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            +P L+   +P  S  ++KP + L     +  L  P  P+ +    S +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER RG  +       VES++ A     +M ++RI+ AE       A   +    ++A+M  G +   PN           K L  LVEWAK IPHF++L ++D++ L+RAGWNELLIA  + RS+  +DGIL A    + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL  +PA +VE+ REKVYA+LE YC+  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   91 SPQLSSPMNPVSSSEDIKPPLGL-----NGVLKVPAHPSGNM--ASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENE---VESTSSA---NEDMPVERILEAEL------AVEPKTETYVEANM--GLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL-SNPA-EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 444

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|133702|sp|P28700.1|RXRA_MOUSE (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 390.193 bits (1001), Expect = 6.478e-132
Identity = 210/385 (54.55%), Postives = 262/385 (68.05%), Query Frame = 0

Query:   14 VPPTPPLA-GLAHP----PQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNK---------RKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            VP TP L  G   P    P +P+    D+   L  +   L  P  P+ +    S +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER RG  +       VES++ A     +M +++I+ AE       A   +    ++A+M  G +   PN           K L  LVEWAK IPHF++L ++D++ L+RAGWNELLIA  + RS+  +DGIL A    + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL  +PA +VE+ REKVYA+LE YC+  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   84 VPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPLGLNG-VLKVPAHPSGNM--ASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENE---VESTSSA---NEDMPVEKILEAEL------AVEPKTETYVEANM--GLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL-SNPA-EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 449

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|147732610|sp|A2T929.2|RXRAA_DANRE (RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName: Full=Nuclear receptor subfamily 2 group B member 1-A; AltName: Full=RXRalpha-B; AltName: Full=Retinoid X receptor alpha-A)

HSP 1 Score: 388.267 bits (996), Expect = 1.117e-131
Identity = 208/387 (53.75%), Postives = 258/387 (66.67%), Query Frame = 0

Query:    7 HSLMEGGV----PPTPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNK-----RKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            HS+   GV      +P L    +   S  ++KP + L      PA P  T       PLS +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER R   +   +   VES++ A     +M +++I+ AE   E       +   +    MP     D          K L  LVEWAK IPHF++L ++D++ L+RAGWNELLIA  + RS+  +DGIL A    + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL  +P  +VE+ REKVYA+LE YC+  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   45 HSMASPGVGYGPSISPQLNSHMNSVSSSEDIKPPLGLNGVMKVPAQPSGT-------PLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKER---SENEVESTSSA---NEDMPVEKILEAELAVEP----KTETYIETNVPMPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL-SNPG-EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 412

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|464702|sp|Q05343.1|RXRA_RAT (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 388.652 bits (997), Expect = 2.189e-131
Identity = 211/389 (54.24%), Postives = 264/389 (67.87%), Query Frame = 0

Query:   14 VPPTPPLAGLAHPPQ--SPL-------ELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNK---------RKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            VP TP L      PQ  SP+       ++KP + L     +  L  P  P+ +    S +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER RG  +       VES++ A     +M +++I+ AE       A   +    ++A+M  G +   PN           K L  LVEWAK IPHF++L ++D++ L+RAGWNELLIA  + RS+  +DGIL A    + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL  +PA +VE+ REKVYA+LE YC+  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   84 VPTTPTLGFETGSPQLNSPMNPVSSSEDIKPPLGL-----NGVLKVPAHPSGNMS--SFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENE---VESTSSA---NEDMPVEKILEAEL------AVEPKTETYVEANM--GLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL-SNPA-EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 449

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|1710719|sp|P51128.1|RXRA_XENLA (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 388.267 bits (996), Expect = 7.386e-131
Identity = 193/324 (59.57%), Postives = 235/324 (72.53%), Query Frame = 0

Query:   62 SGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGG-FDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            S +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR++K C+IDKRQRNRCQYCRY KCLA GM+REAVQEER RG  +       VESS  A     +M +++I+ AEH  E       + +  L  + P            K L  LVEWAK IPHF++L ++D++ L+RAGWNELLIA  + RS+  +DGIL A    + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL     L+VE+ REKVYA+LE YC+  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:  155 SFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERNENE---VESSNSA---NEDMPVEKILEAEHAVEPKTETYTEANMGLAPNSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSN--PLEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 470

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE (RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName: Full=Nuclear receptor subfamily 2 group B member 3-B; AltName: Full=Retinoid X receptor gamma-B)

HSP 1 Score: 386.341 bits (991), Expect = 1.185e-130
Identity = 191/325 (58.77%), Postives = 231/325 (71.08%), Query Frame = 0

Query:   60 PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            P S SKH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y CR+ K C+IDKRQRNRCQYCRY KCLA GM+REAVQEER RG  K     E             +M +D+I+ AE   E       + S     + P        +K+  L  LVEWAK IPHF+DL ++D++ L+RAGWNELLIA  + RS+  +DGIL      + R +AH AGVG IF+RVL ELV KMK+M+MDK ELGCLRAI+LFNPDAKGL    +L+VE+ REKVYA+LE Y +  + ++P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:  120 PGSLSKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDIKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKEKSDTEVE------TTSRFNEDMPVDKILDAELSVEPKTETYTESSPSNSTNDPVTNICHAADKQ--LFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGILLGTGLHVHRSSAHSAGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSN--SLEVEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 434

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|52788288|sp|Q90416.2|RXRGA_DANRE (RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName: Full=Nuclear receptor subfamily 2 group B member 3-A; AltName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Retinoid X receptor alpha; AltName: Full=Retinoid X receptor gamma-A)

HSP 1 Score: 384.415 bits (986), Expect = 4.324e-130
Identity = 197/330 (59.70%), Postives = 241/330 (73.03%), Query Frame = 0

Query:   58 YP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            YP   P S SKH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y CR+NK C IDKRQRNRCQYCRY KCLA GM+REAVQEER RG  +   +   V+SS+       EM +++I+ AE   E       + S     + P        +K+  L  LVEWAK IPHF+DL ++D++ L+RAGWNELLIA  + RS+  +DGIL A    + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYA+LE Y + N+ ++P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:  104 YPCGSPGSLSKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRER---SDNEVDSSS---SFNEEMPVEKILDAELAVEPKTEAYMESSMSNSTNDPVTNICQAADKQ--LFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGL-SNPS-EVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 423

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|52783417|sp|Q90415.1|RXRAB_DANRE (RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName: Full=Nuclear receptor subfamily 2 group B member 1-B; AltName: Full=Retinoid X receptor alpha-B)

HSP 1 Score: 379.793 bits (974), Expect = 3.947e-129
Identity = 193/325 (59.38%), Postives = 237/325 (72.92%), Query Frame = 0

Query:   61 LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGG-FDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            LS +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER R       A E  E+  G G    +M +++I+ AE   E       + +    A+ P            K L  LVEWAK IPHF+DL ++D++ L+RAGWNELLIA  + RS+  +DGIL A    + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAI+LFNPD+KGL  +P+ +VE+ RE+VYA+LE YC+  + ++P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   47 LSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR-------AKERSEAEFG-GCANEDMPVEKILEAELAVEPKTETYVEANLSPSANSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL-SNPS-EVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 361

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE (RecName: Full=Retinoic acid receptor RXR-beta-A; AltName: Full=Nuclear receptor subfamily 2 group B member 2-A; AltName: Full=Retinoid X receptor beta-A)

HSP 1 Score: 376.711 bits (966), Expect = 1.288e-126
Identity = 207/396 (52.27%), Postives = 253/396 (63.89%), Query Frame = 0

Query:   17 TPPLAGLAHPPQSPLELKPDVSLL-LNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRG----GHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNK---------RKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAG--------------VGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            T  ++GL H   S  ++KP   L  L++HSP             P+   K  C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C++DKRQRNRCQYCRY KCLA GM+RE VQ+ER R       +  E    VESS+ A     EM +++I+ AE   EQ            + H  G   G  PN           K L  LVEWAK IPHF++L ++D++ L+RAGWNELLIA  + RS+  +DGIL A    + R +AH AG              VG IFDRVL ELV KM++M+MDK ELGCLRAIILFNPDAKGL   P+ +VE  REKVYA+LE YC+  + ++  RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   86 TVSMSGL-HAVSSSDDVKPPFGLKPLSSHSPG------------PMVSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERDGEVESSSAA---NEEMPVEKILEAEMAVEQ----------KTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLS-SPS-EVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 453

[Close]

BLAST of retinoid x receptor vs. SwissProt
Match: gi|62900941|sp|Q5TJF7.1|RXRB_CANFA (RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=Nuclear receptor subfamily 2 group B member 2; AltName: Full=Retinoid X receptor beta)

HSP 1 Score: 372.089 bits (954), Expect = 5.909e-124
Identity = 193/326 (59.20%), Postives = 230/326 (70.55%), Query Frame = 0

Query:   65 KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKR------KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            K  C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y+CR+NK C +DKRQRNRCQYCRY KCLATGM+REAVQEER RG  K  +      +         EM +DRI+ AE   EQ    S Q  +        G   + P         K L  LVEWAK IPHF+ L ++D++ L+RAGWNELLIA  + RS++  DGIL A    + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAIILFNPDAKGL  +P+ +VE  REKVYA+LE YC+  +  +  RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:  202 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-------EMPVDRILEAELAVEQK---SDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLS-NPS-EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 515

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|1005940533|ref|XP_015788497.1| (PREDICTED: retinoic acid receptor RXR-alpha-B-like [Tetranychus urticae])

HSP 1 Score: 405.986 bits (1042), Expect = 3.602e-136
Identity = 208/350 (59.43%), Postives = 245/350 (70.00%), Query Frame = 0

Query:   35 PDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            P  S+ L +   A P PT       PLSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   K     E   +S        +M I+RI+ AE  SE      R ++ DL   +P  +        + L QL+EWAKHIPHF DL IED+I L+++GWNELLIAG +  SMN +DGI+ A    + R +AH AGVG IFDRVL ELV KM+E+KMDK ELGCLR+I+LFNP+AK L+     Q+E  REKVYA  E+YC++ +  +  RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   81 PSNSISLPSTPVASPSPTPRYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREEKNCIIDKRQRNRCQYCRYQKCLIMGMKREAVQEERQRNKDKNDNEVESTSTS------HNDMPIERILEAELRSE-----PRNDNLDLNDSIPNIWQAAD----RQLYQLIEWAKHIPHFCDLPIEDQIVLLKSGWNELLIAGFSHASMNVKDGIVLATGLVVHRNSAHQAGVGAIFDRVLTELVAKMRELKMDKTELGCLRSIVLFNPEAKHLKS--ISQIELLREKVYAVFEDYCKSTYPEQAGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 413

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|1059423579|ref|XP_017784458.1| (PREDICTED: retinoic acid receptor RXR-alpha-B isoform X2 [Nicrophorus vespilloides])

HSP 1 Score: 404.445 bits (1038), Expect = 6.894e-136
Identity = 222/414 (53.62%), Postives = 266/414 (64.25%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNA---------HSP-----ALPRPTSPAVH----------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRS--MNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411
            PQSPL++KPD + L+++         HSP     A     SP             YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE+K C IDKRQRNRCQYCRY KCLA GM+REAVQEER R   +     E   +      +  EM I+RI+ AE  +E     S+ E  +L+  +            K L QLVEWAKHIPHFT L + D++ L+RAGWNELLIA  + R+   + ++GI+ A    I R +AH  GVG IFDRVL ELV KM+EMKMDK E+GCLR IILFN D +GL+     +VE  REKVYA LEEY RT H NEP RFAKLLLRLPALRSIGLKC+EHLFF++LI++                 ++ F+KE+LE
Sbjct:   24 PQSPLDMKPDTATLISSGQFSPQGGPHSPGSFSMAHSNILSPGGGGGGAKGVGSPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDTSEVESTST------INSEMPIERILEAERRTE----CSKSEKPELENAVTNICQATN----KQLYQLVEWAKHIPHFTGLPVMDQVLLLRAGWNELLIAAFSHRTTEFDAKEGIVLATGLTIHRNSAHQIGVGGIFDRVLTELVSKMREMKMDKTEIGCLRCIILFNSDVRGLKS--INEVEILREKVYAVLEEYTRTKHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIRN---------------VPIDTFLKEMLE 406

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|805758577|ref|XP_012149394.1| (PREDICTED: retinoic acid receptor RXR-alpha-B isoform X4 [Megachile rotundata])

HSP 1 Score: 403.675 bits (1036), Expect = 1.248e-135
Identity = 217/387 (56.07%), Postives = 257/387 (66.41%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNA--HSPALPRP--------------TSPA------VHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAA----EHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PQSPL++KPD + L+NA   SP+ P                TSP+        YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K+CIIDKRQRNRCQYCRY KCLA GM+REAVQEER R   +     E   S      L  +M I+RI+ A    E+  EQ G +    S    A              K L QLV WAKHIPHFT L +ED++ L+RAGWNELLIA  + RS++ +DGI+ A    + R +A  AGVG IFDRVL ELV KM+EMKMD+ ELGCLR+IILFNP+ +GL+     +V   REK+YA LE YCR    ++P RFAKLLLRLPA+RSIGLKC+EHLFF+K+I D
Sbjct:   22 PQSPLDMKPDTASLINAGNFSPSGPNSPGSFNAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSS------LHSDMPIERILEAEKRVEYKMEQQGNYENAVSHICNA------------TNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKS--IQEVTLLREKIYAALEGYCRVAWPDDPGRFAKLLLRLPAIRSIGLKCLEHLFFFKMIGD 388

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|1325306801|ref|XP_023335012.1| (retinoic acid receptor RXR-like [Eurytemora affinis])

HSP 1 Score: 402.905 bits (1034), Expect = 1.374e-135
Identity = 208/369 (56.37%), Postives = 256/369 (69.38%), Query Frame = 0

Query:   51 PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAE-----HISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411
            PT+P   YPP   LS +KH CSICGDRASGKHYGV+SCEGCKGFFKRTVRKEL YACRE K C +DKRQRNRCQYCRYMKCL+ GM+REAVQEER+ G     ++ + ++  +     G E+ I+ I+ AE     H +E   + S Q   D+   M G +   +      LQ LVEWA+HIPHF  L I+D++ L+R GWNEL+I G A RS+   +GI+ AD  F  RE AH AGVG ++DRVLVELVGKM EMKMD++ELGCLR I+LFNPDAKGL +    +VE  RE+ YATLEEY R    N+  RFAKLLLRLPALRSIGL+C EHLFF+K+I D+          D+ + +LE  +KE+LE
Sbjct:   32 PTTPQGGYPPGHPLSNAKHMCSICGDRASGKHYGVFSCEGCKGFFKRTVRKELSYACREEKNCTVDKRQRNRCQYCRYMKCLSMGMKREAVQEERSLGKGGKDDSGDTMDGVS----YGNEIPIENILEAENRCDKHQAEILASLSLQ---DIDTSMEGKY---KLAANIQLQSLVEWARHIPHFNGLSIDDQVALLRNGWNELMIIGFAHRSVGNSEGIMLADGIFATRETAHEAGVGMVYDRVLVELVGKMTEMKMDRSELGCLRTIVLFNPDAKGLTEIG--KVEQIRERAYATLEEYTRNMSPNDNGRFAKLLLRLPALRSIGLRCDEHLFFFKMISDNQGE------FDIRSSTLEFTLKELLE 382

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|1269859024|gb|ATO74595.1| (ultra spiracle [Tetranychus cinnabarinus])

HSP 1 Score: 404.06 bits (1037), Expect = 2.149e-135
Identity = 207/350 (59.14%), Postives = 244/350 (69.71%), Query Frame = 0

Query:   35 PDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            P  S+ L +   A P PT       PLSGSKH CSICGDRASGKHYG YSCEGCKGFFKRTVRK+L YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   K     E   +S        +M I+RI+ AE  SE      R ++ DL   +P  +        + L QL+EWAKHIPHF DL IED+I L+++GWNELLIAG + RSMN +DGI+ A    + R +AH AGVG IFDRVL ELV KM+E+KMDK ELGCLR+I+ FNP+AK L+     Q+E  REKVYA  E+YC++ +  +  RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   81 PSNSISLPSTPVASPSPTPRYPPNHPLSGSKHLCSICGDRASGKHYGAYSCEGCKGFFKRTVRKDLTYACREEKNCIIDKRQRNRCQYCRYQKCLIMGMKREAVQEERQRNKDKNDNEVESTSTS------HNDMPIERILEAELRSE-----PRNDNLDLNDSIPNIWQAAD----RQLYQLIEWAKHIPHFCDLPIEDQIVLLKSGWNELLIAGFSHRSMNVKDGIVLATGLVVHRNSAHQAGVGAIFDRVLTELVAKMRELKMDKTELGCLRSIVPFNPEAKHLKS--ISQIELLREKVYAVFEDYCKSTYPEQAGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 413

The following BLAST results are available for this feature:

BLAST of retinoid x receptor vs. L. salmonis genes
BLAST of retinoid x receptor vs. SwissProt
BLAST of retinoid x receptor vs. nr

BLAST of retinoid x receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000010267	4.917e-14	41.57	supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1...	[more]
EMLSAG00000008261	6.069e-14	43.06	supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 ...	[more]
EMLSAG00000011907	4.708e-12	38.64	supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1...	[more]
EMLSAG00000004174	9.533e-11	40.00	supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-...	[more]
EMLSAG00000007233	4.188e-8	51.11	supercontig:LSalAtl2s:LSalAtl2s405:178614:197434:1...	[more]

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BLAST of retinoid x receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|133701\|sp\|P19793.1\|RXRA_HUMAN	1.941e-132	54.91	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|133702\|sp\|P28700.1\|RXRA_MOUSE	6.478e-132	54.55	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|147732610\|sp\|A2T929.2\|RXRAA_DANRE	1.117e-131	53.75	RecName: Full=Retinoic acid receptor RXR-alpha-A; ...	[more]
gi\|464702\|sp\|Q05343.1\|RXRA_RAT	2.189e-131	54.24	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|1710719\|sp\|P51128.1\|RXRA_XENLA	7.386e-131	59.57	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|82200328\|sp\|Q6DHP9.1\|RXRGB_DANRE	1.185e-130	58.77	RecName: Full=Retinoic acid receptor RXR-gamma-B; ...	[more]
gi\|52788288\|sp\|Q90416.2\|RXRGA_DANRE	4.324e-130	59.70	RecName: Full=Retinoic acid receptor RXR-gamma-A; ...	[more]
gi\|52783417\|sp\|Q90415.1\|RXRAB_DANRE	3.947e-129	59.38	RecName: Full=Retinoic acid receptor RXR-alpha-B; ...	[more]
gi\|52783388\|sp\|Q7SYN5.1\|RXRBA_DANRE	1.288e-126	52.27	RecName: Full=Retinoic acid receptor RXR-beta-A; A...	[more]
gi\|62900941\|sp\|Q5TJF7.1\|RXRB_CANFA	5.909e-124	59.20	RecName: Full=Retinoic acid receptor RXR-beta; Alt...	[more]

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BLAST of retinoid x receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1005940533\|ref\|XP_015788497.1\|	3.602e-136	59.43	PREDICTED: retinoic acid receptor RXR-alpha-B-like...	[more]
gi\|1059423579\|ref\|XP_017784458.1\|	6.894e-136	53.62	PREDICTED: retinoic acid receptor RXR-alpha-B isof...	[more]
gi\|805758577\|ref\|XP_012149394.1\|	1.248e-135	56.07	PREDICTED: retinoic acid receptor RXR-alpha-B isof...	[more]
gi\|1325306801\|ref\|XP_023335012.1\|	1.374e-135	56.37	retinoic acid receptor RXR-like [Eurytemora affini...	[more]
gi\|1269859024\|gb\|ATO74595.1\|	2.149e-135	59.14	ultra spiracle [Tetranychus cinnabarinus]	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold192_size271026	supercontig	scaffold192_size271026:116203..123255 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold192_size271026-snap-gene-1.22-mRNA-1	maker-scaffold192_size271026-snap-gene-1.22-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold192_size271026:116203..123255-

gene from alignment at scaffold192_size271026:116203..123255-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold192_size271026-snap-gene-1.22 ID=maker-scaffold192_size271026-snap-gene-1.22|Name=retinoid x receptor|organism=Tigriopus kingsejongensis|type=gene|length=7053bp|location=Sequence derived from alignment at scaffold192_size271026:116203..123255- (Tigriopus kingsejongensis)
GCCCGGGCCAGCCTGTGGCCTCCAGCGCCATCGATGGAGTCATCCCGATT
TGGCTCTTTATCCGACGCCCGATTTGGCCAAACTGTCGAGCTCAGTCCGA
GATCCTCACCCATTGCCTACACACATCGCCTGTGGGTTGTGAGCCTAGAC
ACTAGGTTGTGAGTGCGCCCGTGAATTGGTAGTGCCCGTGTCCGGCTGGC
TGGCCCGCACCTCCCAGCTCCCCTCCGCCCGTGCGAGTCCCGGGTCATGA
GCCTGGCGTCTTGAGTCGCGCCCCATGGCCATGGATCCCGCCCACAGCCT
CATGGAGGGCGGTGTCCCGCCCACCCCGCCCCTGGCTGGCCTAGCCCACC
CGCCTCAGTCGCCGCTCGAGCTCAAGCCCGACGTGTCCCTGCTGCTCAAC
GCCCATTCACCCGCACTCCCGCGCCCCACCTCGCCCGCAGTCCACTATCC
GCCGCTGAGCGGGTCCAAGCACTTCTGCAGCATCTGCGGCGACCGCGCCT
CCGGCAAGCACTACGGCGTGTACTCGTGCGAGGGCTGCAAGGGCTTCTTC
AAGCGCACCGTCCGCAAAGAGCTGGTCTACGCCTGCCGCGAGAACAAGGC
TTGCATCATCGACAAGCGCCAGCGCAACCGCTGCCAGTATTGCCGCTACA
TGAAGTGCCTGGCCACGGGCATGCGGCGCGAGGCCGTGCAGGAGGAGCGC
AATCGCGGCGGGCACAAGGGGGCCGAGGCGGCTGAGCCGGTCGAGAGCTC
GACGGGGGCCGGTGGGCTGGGGGGCGAGATGGCTATCGACCGCATCGTGG
CCGCCGAGCACATCTCGGAGCAGGGCGGCGCCTTCAGCCGGCAGGAGAGC
GACGATCTCCAGGCTCACATGCCCGGTGGCTTCGACGGGGACCAGCCCAA
CAAGCGCAAGATGCTCCAGCAACTGGTCGAGTGGGCCAAGCACATTCCCC
ACTTCACCGACCTCAAGATCGAAGATCGGGTAAGGCTCCTACCATGGTCT
CGGAGACCCTTTTTGGATAGGGTAGGGGCTGGCGGTCGTGAGCCGAAGGG
GTTTCGGAGGCTAGCGCTGCGGCTAGGGTCACTCGAGCGTAATTGACTTC
GATGAGCGCTGAGGCTAGCTTAATTCGAGCGTAGTTGACCTAGATTGGCG
CTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCT
AGCTTAATTCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAAT
TCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAATTCGAGCGT
AGTTGACTTCGATGAGCGCTGCGGCTAGCTCAATTTGAGGGTAGTTGACC
TAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGG
CGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACTTCGATGAGCGCTGCGG
CTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCTTA
ATTCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAATTCGAGC
GTAGTTGACCTAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGA
CCTAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAATTGACTTCGATG
AGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGC
GGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCT
TAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCTTAAATTGA
CATACTGTTAGGGTTTGGTTACGTCGGGTCAGGTTAGGTCAGGTTGGATG
TTAGAACTGTTTGGGCGCAGGACCGCCAGCCCCTACCTTTACCCCAATTT
TCCGTGGGCCACGGACTTGCCCGGCCCCATGGGCGTTGGACTGGCGCATA
GGGTCACATTGGCCCCCGTCAGCCTGGGCCCACGGTATTGAGACGTCCCA
AGCTGGAATTGAGATAGATGCGGGGGTCTGGTGGCTGGAAATAACCCGCT
CGCCAAGGATGAAAATGATTTTCCGGATGTCAGTTCATCCATAATCAGTC
TGTTTCGAGCCATTCGGCTACTGCTTAACCCACCTCCAGGTCTTCGCTGG
CGTAAATTATGAGAGTCAGCTGTTAGCCAACACATAAATGTGTTTCAGAA
AAACATCGGATACAGTTAGGCTGTACTACACTTACGTGCCACCTCTCGTC
TACTGAGACACACGACCACACCAACCCCTTGAGATCTTGACCATGGCGTG
GCATTACAGCCCAAGGTCCATTCGAAAATCCTAAGGTGCTTCAGCCTAGA
GCAGCGACCTGGGTCGTCACCAATGAAAAAGAGATTTTTTTCACTCGTCA
TGACCACATCTGTTGGTCAAAGCCTCCCAAGTTTCTCTGTACGAACTCGT
TGAGCATGAGCAACACCTAGCTCATCCAGACTTGGGCTCCTGAAGTGTGG
GGCTGCCCATGATGAGGGCAGACTTACGTCTGCATCCTCCCACCTCGATC
CAGTTACATTGTTTAGCCCTTTTGGGTTTCCACTCGGGTTAAGTGGCCAT
GAGGTGAGAAAGTGTTGGCTCGGATCTTTGGCATCGCTGCTTTCATGACG
TGCGCGAGCCTCTGAGGAATTTGGGAAACCCACGAAACGGTGACGTCATT
CCTGGGATGAAAGTAGTCATTGGATCTCCTGGTATACTCTTCCGACTAAT
TGAACCTTCGGCACTAGAGGCTATAATGTGTCTCCCTTTCCAGATTAAGC
TGATTCGGGCTGGCTGGAACGAACTCTTGATCGCTGGCTGTGCCTTCAGG
TCCATGAATCAAGAAGATGGCATCCTCTGGGCGGACTCTCAGTTCATCAA
GCGCGAAAACGCCCATCTGGCCGGAGTTGGCGACATCTTTGACCGAGTTC
TCGTCGAGTTGGTGGGCAAGATGAAAGAAATGAAGATGGTATGGCCCTTT
TGACTTGACTACAACCTTAAAAACCTTATGTGGTATGACTCCTTTCAAGC
CGGCTTTTGTTTTTTTTGTCGAAATCAATACCAACGAGATCGATCTGAGA
CTGAATCCGATACGGAGCATTCAGTCCGAAAAAAGCGGTTTGGCTCAATT
CGAATGGCATTAATCAAGACGGCCTTCGCCCTGTCAATCATTTGCAAATA
TCGAGAGAAGTGTCAGCGGGAACCACATGCTACACCCGACCAGGATACTG
GGCCCAATTACTAAATGCAGGTGGAAATAACTCGGAAAGTATTCCGCCAA
ATGAACGCCCTCCCAGGTTGAAACAAATGGCGGCCTAACTAAAAGCGACG
ACTAGAAAGGCAAGACATCATTGGCATGGTCATTCAAAACGAGGCGTATT
TGTTGCCAATACTTGAAACAGCTATCGATCTTTGGAACTTCCGGGTTTGC
AAACTAGATTTATACTATATACTGTTGTTTAGCGAGGTTTGAGAGACGGC
CAGTGTCCCAAGGTATGGATTTCCGCACACCAGGATGACTAACTGACTTC
GAGGTTGCGTGTTTGGAGGGTCAAGTTGGACCTCCAAATCACAAATAAAT
CCCAGATAAAGCGAGAGACGGGTCTAGTTTATTTGGTTGGTTAAGTACGG
ATGACAACAGAACCCCGTTCTCCGCCTTACCCCACCAACCTCGCCAGGGT
CAATATCCTGTCCACTAAACCGGATCTGGAAAGGACGAGCAGCGGGAAAT
ACAAATCCCCGGTCGCCACACGTGAATGTCACTCCATTGGTAAGCTCCCA
AACCAAAGAGACTTTGTAGCCTATTTAGTTGCCAGAGGAGTAGCATGGCA
AGTATGTGTCTACTTCGAGTAAGTACGCGTACCAGTCTCGTTGGTTTGGG
CGTTGACTAGTGAAGGGACACAAAATCAGTGATTCATCCTGGTGTCGTGA
AATCCATGCCCAAGGTCGCAAATTGATATTTTAGCCTATCACTTTTCCTA
TGGTATTCTACAATGTCTTTTAGGACGGTCGAATTGCCAGAGGTGTGGGC
TCTTTTGTAATAAATCTGACCTGGAGAAAGTCGAACTTTGGAGGAAAGTA
AATTCATAAATAGTATTCACATGATGAGGCAAGCAGCGTAGCTTAATGGT
AGAGTGGCACAATCGGTCATCTATCATTGCGTTATCCGAGGGTCGTTCGT
TCGATCCCCGGGCTGGCCAAGCTCCGGCATCTAGTGGTGTTCACTCACAG
CTATTGTTGGCTTCCCTGGTGGGATTAAAGTGGGCGGACCTGTGGTCATT
CCTCGAGGGTAAGATAATAATTCATGATAAATTTGACCGCCAGGCTGACT
ATGTCTCCTCGGAGATTTCCCTAGCTGGGCAGAAATGCCCATTAGTATTC
ACATAGTACAAAACAGCCTGCATATTGCATTGCTACCAAACTTTAGAGAA
TGCAATGATCGACAATGTTCCCTACGTATATCGTAGATCTACTTGTGAAT
TTGTAATTCAACATTTTGCCTTGTTGGGATCCTACAATTTCATTCATCTG
TGTAAGAAATTCACTTTTTGCCTAGTGTCCACCTCGACTAGAAAGCCGCT
TGTCTCATTGCTTGTGGCTCTGTATACGTACACTGTACAAGTTCCATTAG
GTCCAGCAACGCTTACTGCATCTACGATGTTTGCAAAGATTCATATGTCA
AGGGAGTCGACATACATGGTAAAGTGACATACTGGAGCGACACTCTTGAA
CCTGGTTCTGGTTTTAGTCAAACAAGCCCGAGAGCATAACCTCTGGAATT
GATAGAATTGCCTACAAAACAGCCTGCATCTGGCAGTTTGCCATTCTACC
ATGTGTATATTTTGGTTCACATTTCATCCGGATTCCATGCTTCATAGTTG
CGAACAAATATTCTCATCATATGTAGATTTTCACAATACCAAAATGCTCG
AAGCCTGCGCTTGGTTTGGGGAAGGATGGTTTGATTGATCACATCAAGCA
TTAGTTGGATTCAAAAGGTTTTGCGCCAGTAATCTCCTCAGGAGCCAATC
AGCCCTAGCGGTATGGTAGCGTGGCTTTTTTTGTTTCTTTGTTTGGAACG
CCCCGGCCATTTCTGCCCAACTAAGGAAATCTCCGAGGAGACATAGTCAG
CCTGGTGGACAAATTTATCATGAATTATCACCTTACCCTCGAGGAATGAC
CACAGGTACGCCCACTTTAATCCCGACAGGGAAGCCAACAATAGCTGTGA
TTTAACACCACTACAGGATGTAGTTGCCGGAATTTGGCCAGCCCGGGGAT
CGAACGAACGACCCTCGGATAATGCAATGATAGATGACTGATTGACAATC
AGTCATGGAATGATCTGGGAGGTTGCCCTCTTTACTAAGTAATCGTTCCG
CTGATATCGAGTGAGCAGATTATTCCTCCCACGTCGACACTCTGTTCTTG
CTTGCGCTTCCATGATGAAGCATCTTGTTGCCCGTTGGCAGATACCTTTT
AAGTGATAAATACATCTGGAATAACCCAATCGAACACGACGGAATACACT
TATTCCAAATCTATCATCGAAGGTCGTGGGTTCGATCCACGTGCTGGCTG
AGTTTCAGCCGCGGGTGGTGATAAATCGAAGCTTTTAAAGGACTTAAGTG
GGCGAATTGAATTAGTGAAGGAGGCGTTTCTGTGGTCATGTCTGGAGGTT
AAGGTAATAATTCATGATCAATTTGTTTTGCAAGGCTGGGCTGCATTTCA
ACTATTATTAGCCAAAATGTGGAGAAAAAGCCGTGGGCCTTTCGGGATAA
CTCTCGCCCAAATTGTATTTGGATACGACCAATTAGAAAAGGCATTCTGA
GCAAAAACTGTTGGCCTTAATTGGTTCTCTGAGTGAAATTTGTAGGCATG
GAGCATAATTTATTCTGTGTCAAGGCAATCAAGATGAACTGACTTTTGCT
CAAAATTGTCCGACATTTCGTTAAAGGGATCAGTGTCATAGTGGATATGT
CATACAGTTGTAGATATGTCATAGTGGAAGGGATAGCGTCTCAGTGGACC
AGTTACAGGAATTAATCATTTTTCACAACCGACCAAATATTGCAATGCAT
CTGAGAATCAGTCACCAAATATCGTTGGGTCTAAATCTCGGAGGCGGATG
CTTCGGCCACCACCGAGTTCTTGGGTGCACCACTCCTCATTTGACCGACA
GTCCCTGAACCGAGCTTATTCTGAAGTTTCGTGTTTTCTTTCCAGGATAA
GGCCGAGTTGGGATGTCTGCGTGCAATCATTCTCTTTAATCCCGACGCCA
AGGGCTTGGAGCAGGATCCGGCTCTTCAAGTGGAGTCGTTCCGCGAGAAG
GTCTACGCCACTCTGGAAGAGTACTGCCGCACCAACCACGAGAACGAGCC
CAGTCGCTTCGCCAAGCTCCTGCTCCGATTGCCGGCCTTGCGGTCCATCG
GCTTGAAGTGTGTGGAGCACTTGTTCTTCTACAAGCTCATCAAGGACGAT
GGACCCAATGGCAACGGGGCGGACGTGAACGACGTGGCCGCTCAGAGTCT
GGAACTGTTCATCAAAGAGATCCTCGAGGAGTGAAGTCACAGTGAGCGCG
CAAGTGCCGAAACTTTCATCGCGCAACCTCGAAAGATAGCGAGCGCCTTC
CCGACTTGAGTGCGAGATCAAAGTGAGTGGTGAGAGGGGATGAGCCCAGA
CTCACTTGTGAGCGTGGCAAAGTGCATTTATGAAATGTAAGGGGGTTGTT
TTGTGATCTCTGCCGACTGTACAATACTGATTTACGACACAGTGAGTGGT
GTCCTTGGATGCTCTCACCATCATTACTTAACCACCTTGATTGGGTTGTA
GATGGATCACATTTGCGTGGGCGCTTGGAGTATATATTTTCAAAATGTAA
GCCAATATCAGAGTATATAATTGATGCGATGGAAGATTTATATCCCGTAG
TACCGTCCGAAGGTACCCCTCCGTCACTCTAATTGTTATAACAAATGAAT
ACATACACGCAAGAGATGGATTAATACATAAGATGTGTTTTAATTTATTT
TTT

Synonyms

The feature 'retinoid x receptor' has the following synonyms


Synonym
Tk07205

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