retinoid x receptor, maker-scaffold192_size271026-snap-gene-1.22 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 72.4034 bits (176), Expect = 4.917e-14 Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 0 Query: 68 CSICGDRASGKH--YGVYSCEGCKGFFKRTVR----KELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGA 150 C ICG+ A GKH YG C C+ FF+R+V+ K+ + C + K CII+ + R CQ CR+ KC++ GMR V +R R K A Sbjct: 107 CQICGEVA-GKHVYYGGQCCTSCRAFFRRSVQNNSYKQFI-CCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKKSA 193
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 72.0182 bits (175), Expect = 6.069e-14 Identity = 31/72 (43.06%), Postives = 39/72 (54.17%), Query Frame = 0 Query: 68 CSICGDRASGK-HYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAV 138 C IC D A+ HYG +C C+ FF+R V Y C +K C I K R CQ+CR+ KCL GM+ V Sbjct: 63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWV 134
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 66.2402 bits (160), Expect = 4.708e-12 Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 0 Query: 68 CSICGDRASGKH--YGVYSCEGCKGFFKRTVRK---ELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGA 150 C ICG+ A GKH YG C C+ FF+R+V+ + C + + CII+ + R CQ CR+ KC++ GMR V + R K A Sbjct: 106 CQICGEVA-GKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSKKSA 192
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 62.3882 bits (150), Expect = 9.533e-11 Identity = 34/85 (40.00%), Postives = 42/85 (49.41%), Query Frame = 0 Query: 68 CSICGDRAS-GKHYGVYSCEGCKGFFKRTVRK--ELVYAC-----RENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNR 144 C ICGD A HYG +C C+ FF RTV K + + C E+ C+I K R CQ+CRY CL+ GM V R Sbjct: 137 CRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221
BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000007233 (supercontig:LSalAtl2s:LSalAtl2s405:178614:197434:1 gene:EMLSAG00000007233 transcript:EMLSAT00000007233 description:"maker-LSalAtl2s405-snap-gene-2.21") HSP 1 Score: 53.5286 bits (127), Expect = 4.188e-8 Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0 Query: 99 ELVYACRENKA-CIIDKRQRNRCQYCRYMKCLATGMRREAVQEER 142 +L+Y C+ C+IDK RN+CQ CR KCL GM ++AVQ ER Sbjct: 60 KLIYRCQAGTGMCVIDKAHRNQCQACRLRKCLHMGMNKDAVQNER 104 HSP 2 Score: 50.8322 bits (120), Expect = 3.352e-7 Identity = 43/155 (27.74%), Postives = 76/155 (49.03%), Query Frame = 0 Query: 236 IKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTN--------HENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382 + L+ W+EL + SM E L++ + + + + + D VL ++G+ K ++ AE C++AI+LF P+ +GL +D AL VE+ +++ L + T + SRF +LLL L LR +E L+F ++I Sbjct: 240 VTLLEESWSELFLLCAIQWSMPLEKPSLFS----LPNPELYPSEIVNYVD-VLTGILGRYKRTAVNPAEFACMKAILLFKPETQGL-KDHAL-VENLQDQALVMLNNHVETTLPGGGGGRGQLSSSRFGRLLLLLSNLRQSNSFKIEKLYFDRII 387
BLAST of retinoid x receptor vs. SwissProt
Match: gi|1350911|sp|P28702.2|RXRB_HUMAN (RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=Nuclear receptor subfamily 2 group B member 2; AltName: Full=Retinoid X receptor beta) HSP 1 Score: 371.703 bits (953), Expect = 9.214e-124 Identity = 193/326 (59.20%), Postives = 230/326 (70.55%), Query Frame = 0 Query: 65 KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKR------KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 K C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y+CR+NK C +DKRQRNRCQYCRY KCLATGM+REAVQEER RG K + + EM +DRI+ AE EQ S Q + G + P K L LVEWAK IPHF+ L ++D++ L+RAGWNELLIA + RS++ DGIL A + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAIILFNPDAKGL +P+ +VE REKVYA+LE YC+ + + RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 202 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-------EMPVDRILEAELAVEQK---SDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLS-NPS-EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 515
BLAST of retinoid x receptor vs. SwissProt
Match: gi|1710720|sp|P49743.1|RXRB_RAT (RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=Nuclear receptor coregulator 1; AltName: Full=Nuclear receptor subfamily 2 group B member 2; AltName: Full=Retinoid X receptor beta) HSP 1 Score: 367.081 bits (941), Expect = 6.201e-123 Identity = 195/326 (59.82%), Postives = 231/326 (70.86%), Query Frame = 0 Query: 65 KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKR------KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 K C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y+CR+NK C +DKRQRNRCQYCRY KCLATGM+REAVQEER RG K + + EM +DRI+ AE EQ S Q + A GG + P K L LVEWAK IPHF+ L ++D++ L+RAGWNELLIA + RS++ DGIL A + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAIILFNPDAKGL +P +VE REKVYA+LE YC+ + + RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 127 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-------EMPVDRILEAELAVEQK---SDQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLS-NPG-EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 440
BLAST of retinoid x receptor vs. SwissProt
Match: gi|1350912|sp|P28704.2|RXRB_MOUSE (RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC class I regulatory element-binding protein H-2RIIBP; AltName: Full=Nuclear receptor subfamily 2 group B member 2; AltName: Full=Retinoid X receptor beta) HSP 1 Score: 365.925 bits (938), Expect = 9.350e-122 Identity = 195/326 (59.82%), Postives = 231/326 (70.86%), Query Frame = 0 Query: 65 KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKR------KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 K C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y+CR+NK C +DKRQRNRCQYCRY KCLATGM+REAVQEER RG K + + EM +DRI+ AE EQ S Q + A GG + P K L LVEWAK IPHF+ L ++D++ L+RAGWNELLIA + RS++ DGIL A + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAIILFNPDAKGL +P +VE REKVYA+LE YC+ + + RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 189 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-------EMPVDRILEAELAVEQK---SDQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLS-NPG-EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 502
BLAST of retinoid x receptor vs. SwissProt
Match: gi|52783418|sp|Q90417.1|RXRBB_DANRE (RecName: Full=Retinoic acid receptor RXR-beta-B; AltName: Full=Nuclear receptor subfamily 2 group B member 2-B; AltName: Full=Retinoic acid receptor RXR-delta; AltName: Full=Retinoid X receptor beta-B; AltName: Full=Retinoid X receptor delta) HSP 1 Score: 361.688 bits (927), Expect = 2.562e-121 Identity = 198/401 (49.38%), Postives = 253/401 (63.09%), Query Frame = 0 Query: 6 AHSLMEGGVPPTPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGS------KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPN----KRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWAD--------------SQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382 + S+ GVP TP + + P S ++ +S+ H+ + P +SGS K C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C++DKRQRNRCQYCRY KCLA GM+REAVQEER + + + E S+ A EM +++I+ AE E DL + G + N K L LVEWAK +PHF+D+ ++D++ L+RAGWNELLIA + RS++ +D IL A F RE++H A VG +FDRVL ELV KM++M+MDK ELGCLRAI+LFNPDAKGL +VE REKVYA+LE YC+ + ++ RFAKLLLRLPALRSIGLKC+EHLFF+KLI Sbjct: 26 SSSIGSPGVPGTP---SIGYGPISNSQINSSMSVS-RLHAVSSSDDVKPPFGLKSVSGSGPMLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQKNKERDGD----YECSSSA---NEEMPVEKILEAETAVEH--------RTDLHSDATGSPNDPVTNICQAADKQLFTLVEWAKRVPHFSDVPLDDQVILLRAGWNELLIAAFSHRSISVKDEILLATGLHVPKESTHNLGVEAFFDRESSHSAEVGALFDRVLTELVCKMRDMQMDKTELGCLRAIVLFNPDAKGLTSSS--EVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 405
BLAST of retinoid x receptor vs. SwissProt
Match: gi|18202151|sp|O76202.1|USP_CHOFU (RecName: Full=Protein ultraspiracle homolog; AltName: Full=Nuclear receptor subfamily 2 group B member 4) HSP 1 Score: 338.191 bits (866), Expect = 1.690e-111 Identity = 189/393 (48.09%), Postives = 240/393 (61.07%), Query Frame = 0 Query: 27 PQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKR-----------KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSM-----NQEDG-----------ILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNG 389 P SP E+KPD ++L A P +YPP LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE + CIIDKRQRNRCQYCRY KCLA GM+REAVQEER R +GAE A P S + E++I+R+ E + S++ Q G P R K + LV WA+ IPHF L+++D++ LI+A WNELL+ A+RSM +E+G + + R +A AGVG IFDRVL EL KM+ ++MD+AE L+AI+L NPD KGL+ +V+ REK+++ L++YCR + NE RFA LLLRLPALRSI LK EHL+F+ L+ + +G Sbjct: 77 PMSPPEMKPDTAMLDGLRDDATSPPNFK--NYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERNCIIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRNA-RGAEDAHPSSSVQ----VSDELSIERLTEMESLVA-------DPSEEFQFLRVGPDSNVPPRYRAPVSSLCQIGNKQIAALVVWARDIPHFGQLELDDQVVLIKASWNELLLFAIAWRSMEYLEDERENGDGTRSTTQPQLMCLMPGMTLHRNSAQQAGVGAIFDRVLSELSLKMRTLRMDQAEYVALKAIVLLNPDVKGLKNRQ--EVDVLREKMFSCLDDYCRRSRSNEEGRFASLLLRLPALRSISLKSFEHLYFFHLVAEGSISG 453
BLAST of retinoid x receptor vs. nr
Match: gi|657600368|gb|AID52845.1| (ultraspiracle [Tigriopus japonicus]) HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0 Identity = 346/436 (79.36%), Postives = 366/436 (83.94%), Query Frame = 0 Query: 7 HSLMEGGVPPTPPLAGLAHP------PQSPLELKPDVSLLLNAHSPA------------LPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAE-----------PVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNG-ADVNDVAAQSLELFIKEILEE 412 + LME P G P PQSPLELKPDVS+LLNA SPA PRP SP+V+YPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRENK CIIDKRQRNRCQYCRYMKCLA GMRREAVQEERNR G + A VESST G +M I+RI+ AE+ISE GGAFSR++S+DLQAHM GGF+GDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMN+E+GILWADSQFIKRENAHLAGVGDIFDRVLVELV KM+EMKMDKAELGCLRAIILFNPDAKGLEQ PAL+VE+FREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPN NG ADVNDVAAQSL++FIKEILEE Sbjct: 14 NGLMESAGVPAAASVGANTPSNAFGNPQSPLELKPDVSMLLNAPSPASSVSGGGLANPQTPRPGSPSVNYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENKDCIIDKRQRNRCQYCRYMKCLANGMRREAVQEERNRSGSSASGGANNGGGTGVGKEGEVESSTPGGQTSSDMPIERIIEAENISELGGAFSRKDSEDLQAHMTGGFEGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNEENGILWADSQFIKRENAHLAGVGDIFDRVLVELVQKMREMKMDKAELGCLRAIILFNPDAKGLEQGPALEVETFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNSNGAADVNDVAAQSLDIFIKEILEE 449
BLAST of retinoid x receptor vs. nr
Match: gi|662179194|gb|AIE45497.1| (retinoid X receptor [Lepeophtheirus salmonis]) HSP 1 Score: 467.233 bits (1201), Expect = 3.806e-160 Identity = 257/451 (56.98%), Postives = 301/451 (66.74%), Query Frame = 0 Query: 14 VPPTPP-LAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTS----------------PAVH-------------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRG------------GHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISE---QGGAFSRQESDDLQAHMPGGFDGDQPN----KRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILEE 412 PPTP L + PQSP++LKPD SLLL S P S P VH YPP LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACREN+ C+IDKRQRNRCQYCRYMKCL TGM+REAVQEER+RG + + +E VESST G GG+M I+RI+ AE + E F +++ + D + K++++ QL+EWAK +PHF++LK+ED++ LIR GWNELL+AG AFRS+ DGIL + + RENAH AGVG IFDRVLVEL+ KMKEM+MDKAELGCLRAIILFNPDAKGL +VE+ REKVYATLEEY R+ HENEPSRFAKLLLRLPALRSIGLKC+EHLFFYKL+ D +GN LE FI+ +LEE Sbjct: 4 TPPTPNHLLNPGYMPQSPVDLKPDASLLLTTLSNPQSTPPSSAYPVGESMYGSQAPHPGVHGHARSTQSPPNNTYPPNHPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHRGSNGPNHNNNNNNNNNNSRNSEEVESSTSGG--GGDMPIERIIEAEDVGEMKQDTSEFLLLDNNSSMSGGGSIGDMEIQRFGLAKKRIIHQLIEWAKLVPHFSELKVEDQVTLIRGGWNELLVAGLAFRSIKLNDGILLGNGTIVTRENAHEAGVGHIFDRVLVELIAKMKEMQMDKAELGCLRAIILFNPDAKGLSD--VTKVENLREKVYATLEEYTRSVHENEPSRFAKLLLRLPALRSIGLKCLEHLFFYKLVGDYLNDGN----------PLEKFIQSLLEE 440
BLAST of retinoid x receptor vs. nr
Match: gi|1110961970|gb|APG80612.1| (ultraspiracle [Paracyclopina nana]) HSP 1 Score: 429.869 bits (1104), Expect = 1.569e-145 Identity = 233/427 (54.57%), Postives = 282/427 (66.04%), Query Frame = 0 Query: 21 AGLAHPPQSPLELKPDVSLLLNAHSPA--------------LPRPTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLG-----------------GEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMN-QEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILEE 412 G P SP E KPD L+ +SP L R +SP +YPP L+ SKH C+ICGD+ASGKHYGVYSCEGCKGFFKRTVRKEL YACREN+ CIIDKRQRNRCQYCRYMKCL TGM+REAVQEER+RG A V STGA LG +M +DRI+ ++ SE+ G + AH G PN + Q+VE+AK++P F DL ++ +I LI++GWNEL+I G A+RSM+ E+GIL + I E+AH AG+G+IFDRVL+ELVGKM+EMKM+K EL CLRAI+LFNPDA GL D + QVE+ REKVYATLEE+CRT HE + SRFAKLLLRLPALRSIGLKC EH FF+KL+++D D N ++E FIK LEE Sbjct: 15 GGYDDQPNSPAEQKPDPMALMRGYSPGGSPGSTMTAGSPGGLVRSSSP--NYPPNHPLANSKHLCTICGDKASGKHYGVYSCEGCKGFFKRTVRKELSYACRENRNCIIDKRQRNRCQYCRYMKCLQTGMKREAVQEERSRGKESTGSAGGQV--STGAKELGQVANGIKEELPETTCTNSDMPLDRILESQVKSEKAG----ENPGAHPAHQAFNATGGDPNS-SIFAQIVEFAKNLPLFPDLSLDTQITLIKSGWNELMILGAAYRSMSLNEEGILMGQGKIITMEDAHRAGLGEIFDRVLIELVGKMEEMKMEKCELACLRAIVLFNPDAPGLTNDASNQVETLREKVYATLEEHCRTRHEKDTSRFAKLLLRLPALRSIGLKCAEHHFFFKLVREDRTMFEMDDGN----SAMETFIKNFLEE 428
BLAST of retinoid x receptor vs. nr
Match: gi|105872963|gb|ABF74729.1| (retinoid X receptor-like protein [Daphnia magna] >gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna] >gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex] >gi|1022761776|gb|KZS07689.1| Retinoic acid receptor RXR-alpha-A [Daphnia magna]) HSP 1 Score: 422.165 bits (1084), Expect = 5.164e-143 Identity = 224/393 (57.00%), Postives = 266/393 (67.68%), Query Frame = 0 Query: 27 PQSPLELKPDVSLLLNAHSP------------------ALPRPT--------------SPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 PQSP+++KPD + L+ SP +LP+P+ S + HYPP LS SKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE++ C+IDKRQRNRCQYCRY KCL GM+REAVQEER R KG ++ +GG G+M IDR++ AE E + ++ D K L QLVEWAKHIPHFT+L ++D++ L+RAGWNELLIA + RS+ +DGI+ A I R +AH AGVG IFDRVL ELV KM+EMK+D AELGCLRAIILFNPD KGL+ QVE+ REKVYATLEEY RTN+ +EP RFAKLLLRLPALRSIGLKC+EHLFF+KLI D Sbjct: 6 PQSPIDMKPDTATLMAGFSPGSVGGGNSPTSPRSGLGFSLPQPSFTIGHSGYLNNSNGSKSGHYPPNHPLSNSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDKRQRNRCQYCRYQKCLQMGMKREAVQEERQRNKEKGE-----MDMDATSGG-QGDMPIDRVLEAEKRVECKDEPQVNSATAALGNICAATD-------KQLFQLVEWAKHIPHFTELPLDDQVVLLRAGWNELLIAAFSHRSVGVKDGIVLATGLVIHRNSAHQAGVGSIFDRVLTELVSKMREMKLDLAELGCLRAIILFNPDPKGLKS--VSQVEALREKVYATLEEYTRTNYADEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 383
BLAST of retinoid x receptor vs. nr
Match: gi|314955486|gb|ADT64884.1| (retinoid X receptor [Gryllus firmus]) HSP 1 Score: 420.624 bits (1080), Expect = 2.905e-142 Identity = 223/379 (58.84%), Postives = 263/379 (69.39%), Query Frame = 0 Query: 27 PQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 PQSPL++KPD + L+++ S + +S ++ YPP LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL GM+REAVQEER R KG EA VES++ L +M ++RI+ AE E + + + + NK+ L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA + RSM +DGI+ A I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+ +VE REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D Sbjct: 18 PQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386
BLAST of retinoid x receptor vs. nr
Match: gi|314955556|gb|ADT64885.1| (retinoid X receptor [Gryllus firmus]) HSP 1 Score: 420.624 bits (1080), Expect = 3.001e-142 Identity = 226/396 (57.07%), Postives = 267/396 (67.42%), Query Frame = 0 Query: 10 MEGGVPPTPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 MEG + PQSPL++KPD + L+++ S + +S ++ YPP LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL GM+REAVQEER R KG EA VES++ L +M ++RI+ AE E + + + + NK+ L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA + RSM +DGI+ A I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+ +VE REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D Sbjct: 1 MEGSAGGITLDGSIMGGPQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386
BLAST of retinoid x receptor vs. nr
Match: gi|302202572|gb|ADL09403.1| (retinoid X receptor [Gryllus firmus]) HSP 1 Score: 418.698 bits (1075), Expect = 1.381e-141 Identity = 222/379 (58.58%), Postives = 263/379 (69.39%), Query Frame = 0 Query: 27 PQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 PQSPL++KPD + L+++ S + +S ++ YPP LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K CIIDKRQRNRCQYCRY KCL GM+REAVQEER R KG EA VES++ L +M ++RI+ AE E + + + + NK+ L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA + RSM +DGI+ A I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+ +VE REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D Sbjct: 18 PQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386
BLAST of retinoid x receptor vs. nr
Match: gi|227150229|gb|ACP19739.1| (putative retinoid X receptor [Calanus finmarchicus]) HSP 1 Score: 416.001 bits (1068), Expect = 1.681e-140 Identity = 227/395 (57.47%), Postives = 270/395 (68.35%), Query Frame = 0 Query: 27 PQSPLELKPDVSLLLNAH-SPALPR-PTSPAVH------------------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAA-EPVESSTGAGGLG-GEMAIDRIVAAEHISEQGGAFS-RQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVN 395 PQSP+E+KPD SLL + SP + + PTS + YPP LSG+KH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE+K C+IDKRQRNRCQ+CRY KC+A GM+REAVQEER RG + VE S LG G+M DRI+ AE I ++ E DD+QA + K L LVEWAK IPHFT L ++D++ L+R GWNEL+IAG + RS+ ++GI A + RENAH +GVG IFDRVLVELV KM EM MDK ELG LRAI+L+NPD KGL +D A +VE RE+VYA+LEEY R+ HENE RFAKLLLRLPALRSIGLKC+EHLFF+K+I G +G G D + Sbjct: 17 PQSPMEMKPDTSLLTTVNNSPMMSQSPTSASTSFMGFGSPGGGQKSPLPGTYPPSHPLSGAKHMCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREDKQCLIDKRQRNRCQFCRYNKCMAMGMKREAVQEERQRGSRGDKNGGDDEVEGSV----LGPGDMPTDRILEAERICDKHEREQLTNEGDDIQAKFKFAAE-------KQLTSLVEWAKQIPHFTSLCLDDQVALLRGGWNELMIAGFSHRSIGIQNGIQLASGVVVTRENAHTSGVGAIFDRVLVELVSKMTEMCMDKTELGSLRAIVLYNPDVKGL-KDIA-RVEQLRERVYASLEEYTRSTHENETGRFAKLLLRLPALRSIGLKCMEHLFFFKII---GESGAGLDAH 395
BLAST of retinoid x receptor vs. nr
Match: gi|314955738|gb|ADT64886.1| (retinoid X receptor, partial [Gryllus firmus]) HSP 1 Score: 410.994 bits (1055), Expect = 3.533e-139 Identity = 212/332 (63.86%), Postives = 243/332 (73.19%), Query Frame = 0 Query: 56 VHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384 + YPP LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL GM+REAVQEER R KG EA VES++ L +M ++RI+ AE E + + + + NK+ L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA + RSM +DGI+ A I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+ +VE REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D Sbjct: 20 IQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 341
BLAST of retinoid x receptor vs. nr
Match: gi|66864094|dbj|BAD99298.1| (ultraspiracle [Leptinotarsa decemlineata]) HSP 1 Score: 411.379 bits (1056), Expect = 5.120e-139 Identity = 218/406 (53.69%), Postives = 259/406 (63.79%), Query Frame = 0 Query: 27 PQSPLELKPDVSLL-------------------LNAHSPALPR--PTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411 PQSP+++KPD S L L + SP P+ P SP PLSGSKH CSICGD+ASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K C+IDKRQRNRCQYCRY KCL GM+REAVQEER R + A E S+ EM+I+R++ AE R E +D + K L QLVEWAK IPHFT L + D++ L+RAGWNELLIA + RSM ++GI+ A I + A GVG+I+DRVL ELV KMKEM+MDK ELGCLRAIIL+NPD +GL+ +VE REK+Y LEEY RT H NEP RFAKLLLRLPALRSIGLKC+EHLFF++LI D +++ FI E+LE Sbjct: 6 PQSPMDIKPDASTLQFSPQGPNSPGSFSLGHANLLSPSPGGPKGVPNSPYPPNHPLSGSKHLCSICGDKASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRTKDRDASEVESTSSNP------NEMSIERLLEAE---------KRVECNDPPVALENAVTNICQATNKQLLQLVEWAKLIPHFTSLPVSDQVLLLRAGWNELLIASFSHRSMQTQEGIILATGLTINKSTAQAVGVGNIYDRVLSELVNKMKEMRMDKTELGCLRAIILYNPDVRGLQS--TQEVEILREKIYENLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD---------------VTIDTFITEMLE 379 The following BLAST results are available for this feature:
BLAST of retinoid x receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of retinoid x receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of retinoid x receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold192_size271026:116203..123255- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold192_size271026-snap-gene-1.22 ID=maker-scaffold192_size271026-snap-gene-1.22|Name=retinoid x receptor|organism=Tigriopus kingsejongensis|type=gene|length=7053bp|location=Sequence derived from alignment at scaffold192_size271026:116203..123255- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'retinoid x receptor' has the following synonyms
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