wd repeat and hmg-box dna-binding protein 1, maker-scaffold1959_size23944-snap-gene-0.6 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000000659 (supercontig:LSalAtl2s:LSalAtl2s1105:15895:22907:-1 gene:EMLSAG00000000659 transcript:EMLSAT00000000659 description:"maker-LSalAtl2s1105-augustus-gene-0.32") HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0 Identity = 396/1058 (37.43%), Postives = 601/1058 (56.81%), Query Frame = 0 Query: 12 LSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTAL-AVSGDGRYLLA-GSDDMTVKLVDTQTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDG--LAKANDLSTAKSPGVVALHPK-GKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPSKYE-LAIMDSQGYWGLIDKMTFVEDNEEQDVEEEEDVTKTTHDEGDLDADQLAALMEDDDDNENSFSIRKIKRDTGF------LSEDDSNMSKPHFRGEDQ-------ERGVEPVDAPPTSGLLAPVLGGDPHYQVDIQPPFQPTATPTRLSSRFMAWNSVGVVKCFNNNEENSIEVEFHDTAIHHSFHITNAHNHSMADLSRSCLVLASEIAEDDPR----ASRITCRLLASSDLSPEWSIEMPPKEEVLAICCGRDWLAAATDRRLLRIFSSGGNQWEILALPGPILALAGHENWLMVTCHTGMALPGSPSVSFAVFDLRKSGRRHPAGSFTPLPFAPNTELVWIGFSDEGTPGMMDSAGQVRLLHSGFGACWTQICDTRSGLKTKSDHHFLVGISEQEHQVRTILCKGATYPGTTPPPTVALVPFALPLCEAATEKGVLEEELWKCNLLSRALRGSEPLAEVEETQSRCLIKLFALAMKNDHETRALEICKLMDAATIGLAIRYASSNRRMQLAQRISKLANDALQEEQEQQ---RAQSQMSHADMFEDQGGDEQAEEEEEDDTNAPSNPILEAKMKRNLLGSGGRSRTIIPD--SQGDAGRNPFARKSVPNTP-SGAIRKGDTVFDDMTLKSQSSRNRGSFGDRKFKPGTGIKVKPAFGKQSTIVLKKTVPAKDNGAQ-----ALSPLSGFQLWLAENRGQVAAICDSGTEDSAINIKGLEMWKQLKKEDKDQYRSPRVP--------KRKSEDELTASPASK 1027 +S +++ H EG ++Y P + T G+DGEVR ++ +DDD+ SHL GDETLA+AV F+ +A+ TN + Y + +G + ++ RFTAD T L V +G+ L+A GSDDM VK+++ ++K+ +F+GHEA ILSV LDP+ + VS+SCDG++ +WNIA E +I+ + L + +D ++K+ V +P G A+ ++ + Y +G T+V + K+E + V+ W +G+++ TS+G+I IW + D S+ + R GI +AW PSK E ++ ++ + YWG++ + E+NE++ E + + + ++ + DDD+EN+FSI+KIK GF L D N+S RG D+ E+ + + P AP+ D + +Q FQP +TP LSSRFM WNS+G+VK N ++E++I++EFHDT+IHH+FH+ N H ++MA LS +V A+E ++ AS++ ASSD + EWSI+MP EE+L IC G W+AA TD+R LRIF+ G Q + +L GP++ L+GH +++ + H G L + S+ AV D+ + +RH FTPLP P++ L W GFSDEGTP DS G VR+ WT++C+ S K KSD HF++G+SE+E VR I CKG YP T P PTV ++P LPLC+ +EK LEE+ K +L+ + + +A ET +IKLFALA+K+D E RALEICKLM+ T+ +A++YAS R++QLA ++++LA ++E+E++ R + S DMFE Q +EQ E +D NP+L AK+K+ I D SQGD RNPF + + NTP +G+IR G VFD ++ SQ+S+ + S + F T +K KQ I +V +N + L GF LWL EN I + GL++WK+L K +KD+Y+ PR P KR ED + + S+ Sbjct: 190 ISDLKYTHREGNCIIKYAPSSGKIYTGGADGEVREFKNMDDDESKSHLIGDETLALAVGKTHFYTSATNTNRVMSYKIEDGSEDCIVIRFTADVTTLDIVEKEGKILIAAGSDDMIVKVMNLNSHKEFIFKGHEASILSVCLDPKNLDK--VVSTSCDGSIILWNIADE-KIKKIHNSVLPRFSDFQSSKTLSQVVWNPADGSTFAVAHQNGIYFYNSTNG-TEVKNFQMNNSDDKNEYLSVLDWFINGEYIVGGTSSGKIIIWAYKDGSIHYNNTPGRSNGIRSIAWSPSKIEEISFLNKEAYWGIL-TVDLQEENEDRLEGANEMLNEN-------EMMRVFEENDGDDDDENAFSIKKIKASAGFQEDQEGLDVFDPNISS---RGIDEKVGEILMEKNISKAENP------APLSSFD----MKLQDTFQPASTPVHLSSRFMVWNSIGIVKAQNLDDESAIDIEFHDTSIHHAFHLPNPHGYTMACLSNLAVVFAAEADGEEEDEDHIASKLNVHYFASSDYNKEWSIDMPKGEEILCICIGSSWIAAGTDKRNLRIFTLAGMQKNVFSLNGPLVTLSGHGDYIFIVTHFGAPLVHNQSLYVAVLDI-SNYKRHLISHFTPLPLTPSSSLTWAGFSDEGTPTFSDSVGVVRIFDYS-SHQWTEVCNMSSYCKGKSDSHFMLGLSEKEEIVRAIKCKGTKYPVTVPKPTVTVLPMQLPLCDQGSEKTTLEEKYLKGEILN---KNEDDIAATNET----IIKLFALAIKSDQERRALEICKLMNMDTLKIAVKYASKLRKLQLANKVNELARQISEKEEERRDKLRLSTLCSQNDMFETQEEEEQEENGHQDSA-LQDNPLLNAKIKK----KNNVPLKCISDTQSQGDT-RNPFKKTLLKNTPQAGSIRTG-LVFDSISQSSQNSQIKSSQDN--FPNKTIVKKSE---KQRLITHSSSVRQGNNDINKETQSSYKQLKGFLLWLXENPQDSNNIVKNKE-------LGLKIWKELPKVEKDKYKVPRTPLSIVSTNRKRSLEDHIVRNTDSQ 1194
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000001111 (supercontig:LSalAtl2s:LSalAtl2s1186:117586:119588:-1 gene:EMLSAG00000001111 transcript:EMLSAT00000001111 description:"maker-LSalAtl2s1186-snap-gene-1.40") HSP 1 Score: 62.3882 bits (150), Expect = 3.197e-10 Identity = 62/277 (22.38%), Postives = 123/277 (44.40%), Query Frame = 0 Query: 7 RGSATLSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDD--DDPIS-HLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYKD-HVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKY-LAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLA 278 R + +L HT+G S+++++P+G + + +D ++++ D + IS H G +A + +D R V+AS T++ + L+ G+ + + + +++GS D +V++ D +T K H P+ +V + + VSSS DG RIW+ A QC+ L ++ + V P GKY LA +++++ ++ G K S K + + G ++ S + ++IW+ K + Sbjct: 17 RPNYSLKFTLAGHTKGVSAVKFSPNGEWLASSSADKLIKVWGSYDGKFEKTISGHKLGISDVAWS-SDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLVVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN---RDGSLIVSSSYDGXCRIWDTASG---QCLKTLIDNDNPPVS----FVKFSPNGKYILAATLDNTLKLWEYSKG--KCLKTYSGHRNEKYCVFANFS-VTGGKWIVSGSEDNMVYIWNLQTKEIV 279
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000006041 (supercontig:LSalAtl2s:LSalAtl2s327:367648:370815:1 gene:EMLSAG00000006041 transcript:EMLSAT00000006041 description:"maker-LSalAtl2s327-augustus-gene-3.42") HSP 1 Score: 53.5286 bits (127), Expect = 1.343e-7 Identity = 50/204 (24.51%), Postives = 96/204 (47.06%), Query Frame = 0 Query: 25 SLRYTPDGSTVVTCGSDGEVRLY--QGIDDDDPISHLAGDETLAVAVTDERFFVAASGTN-TIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVD-TQTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKYLA-IPMESSVVIYA 223 ++ ++PD T+++ + G+V +Y + + + G L++A + + ++A+ T+ I +S+ G+ + +LA S D + LL GSDD +KL + + GH + +LSV P + E VS S D +V++W QCV +D A S P G+ +A + ++S+++Y+ Sbjct: 113 TVAFSPDSETLISGANAGKVNIYCVETGQNKQQLLDTRGKFILSIAYSPDGKYIASGATDGIINIFSMPTGKQXHALEGHALPIRSLAFSKDSKRLLTGSDDGHMKLYEVSHGSLIGTLSGHTSWVLSVQFSP---DNEXFVSGSSDRSVKVWE---STTKQCVHTFTDHSDQVWAAS-----YSPNGRKIATVSEDASILMYS 305
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000003862 (supercontig:LSalAtl2s:LSalAtl2s209:625539:633615:-1 gene:EMLSAG00000003862 transcript:EMLSAT00000003862 description:"maker-LSalAtl2s209-snap-gene-5.15") HSP 1 Score: 53.1434 bits (126), Expect = 3.389e-7 Identity = 60/269 (22.30%), Postives = 105/269 (39.03%), Query Frame = 0 Query: 8 GSATLSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRL---YQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDT-QTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDF 272 S +S + H+ + ++PD S +++C DG +RL Y+G H+ AV +F + QGY Y + D TV L T Q + +F GH + + +A P + S S D +VR+W+ N ++ + G A +ST +A P G++LA S V++ W L A + + +A+++DG+ LA +++ + +W F Sbjct: 389 NSGVVSRTLYGHSGPVYGISFSPDKSMLLSCSEDGTIRLWICYRG--------HM-------YAVWHVKF--------SPQGY----------------------------YFASAGHDKTVMLWSTEQHHSLRIFAGHFSDVDCIAFHP---NCNYIASGSSDRSVRVWDCVSGNCVRLMTGHKTA--VST------LAFSPDGRFLASGGRDSRVLF-----WDIAHGHLLADLSNHSQTVTALAFSRDGNILAXSSTDFXLAMWXF 590
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. SwissProt
Match: gi|353526246|sp|P83774.2|GBLP_CANAL (RecName: Full=Guanine nucleotide-binding protein subunit beta-like protein; AltName: Full=Cytoplasmic antigenic protein 1) HSP 1 Score: 60.8474 bits (146), Expect = 1.737e-8 Identity = 61/206 (29.61%), Postives = 94/206 (45.63%), Query Frame = 0 Query: 108 LAVSGDGRYLLAGSDDMTVKLVDTQTYKD-HVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKYLAIPMESSVVIYAQEDGWTKVW----TRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPSKYELAIMDSQG 308 + +S DG Y L+ S D T++L D +T + F GH+ +LSV++ + VS+S D TV++WN GE C+ L ND +A V + P +SS VI A D K W ++A + + + DG ASA G I +WD +K+ T + + LA+ P++Y LA + G Sbjct: 72 VTISADGAYALSASWDRTLRLWDLETGETTQRFVGHKGDVLSVSIAKNLRQ---IVSASRDKTVKVWNTIGE----CMATLTGHNDWVSA-----VRISPSD-------QSSTVISASWDKTVKSWDLADYSVNADFIGHTGYISCITLSPDGSLCASAGKDGVIILWDL-NKNKTLYTLEAKAE-VHALAFSPNRYWLAAATTSG 256
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. SwissProt
Match: gi|8928446|sp|Q9V3J8.1|WDS_DROME (RecName: Full=Protein will die slowly) HSP 1 Score: 60.8474 bits (146), Expect = 2.501e-8 Identity = 67/299 (22.41%), Postives = 132/299 (44.15%), Query Frame = 0 Query: 11 TLSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDD--DDPIS-HLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYKD-HVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKY-LAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVA--WAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPSKYELA 302 TL HT+ S+++++P+G + + +D ++++ D + IS H G +A + +D R V+ S T++ + L+ G+S + + + +++GS D +V++ D +T K H P+ +V + + VSSS DG RIW+ A QC+ L ++ + V P GKY LA +++++ ++ G L K+E + A G ++ S + ++IW+ K + + + +C A HP++ +A Sbjct: 63 TLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN---RDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCT-ACHPTENIIA 344
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. SwissProt
Match: gi|74996874|sp|Q54PE0.1|PWP2_DICDI (RecName: Full=Periodic tryptophan protein 2 homolog) HSP 1 Score: 61.6178 bits (148), Expect = 2.542e-8 Identity = 66/260 (25.38%), Postives = 118/260 (45.38%), Query Frame = 0 Query: 18 AHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVA----VTDERFFVAASGTNTIQGYSLAEGQS-EGVITRFTADGTALAVSGDGRYLLAGSDD---MTVKLVDTQTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKG-KYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIF 268 H+ +++ Y+PDG T+ T G DG+V+++ I+ + + V+ + +A TI+ + L ++ ++ + LAV G + AGS D + V V T D + GH++P+ +A DP F S+S D + +IWNI + EI+ + + +D+ T A G K++ ++ ++ IY T W ++ + K++IMG + KD + LA S GR F Sbjct: 356 GHSYNMNTVAYSPDGQTIATGGEDGKVKIWNTTSGYCYITFTEHEGPVTAVKYSPVSSQNVVFSAGVDGTIRAFDLVRYRNFRTFVSPNKTQFSCLAVDPSGEIIAAGSLDSFEIYVWSVRTGRLTD-ILSGHQSPVCELAFDPINP---FLASASWDKSCKIWNIFEDREIR--ESIQHTSDVLTC------AYSQDGKKFIVSCLDGTIQIYE-----TSTWGQIGLID-GKNDIMGGRGY-KD-EILAKNNSAGRAF 595
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. SwissProt
Match: gi|51317307|sp|P62883.1|GBLP_LEICH (RecName: Full=Guanine nucleotide-binding protein subunit beta-like protein; AltName: Full=Antigen LACK >gi|51317308|sp|P62884.1|GBLP_LEIIN RecName: Full=Guanine nucleotide-binding protein subunit beta-like protein; AltName: Full=Antigen LACK; AltName: Full=LiP36; AltName: Full=p36Li) HSP 1 Score: 60.077 bits (144), Expect = 2.794e-8 Identity = 59/236 (25.00%), Postives = 94/236 (39.83%), Query Frame = 0 Query: 74 FFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYKDHVFR--GHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAG----------ENEIQCV--------------DGLAKANDLST--------AKSP-GVVALHPKGKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYD 274 + + AS +I+ + L GQ + + T D A+A S D R +++ D +++ + H F GHE + S+ P P VS S D T+++WN+ G N + V DG A DLST +SP +A P ++ + E S+ +Y E +K P+ K +AW+ DG+ L S I +W D Sbjct: 79 YALTASWDRSIRMWDLRNGQCQRKFLKHTKDVLAVAFSPDDRLIVSAGRDNVIRVWNVAGECMHEFLRDGHEDWVSSICFSPSLEHP-IVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIAFSPNRFWMCVATERSLSVYDLE---SKAVIAELTPDGAKPSECISIAWSADGNTLYSGHKDNLIRVWSISD 310
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. SwissProt
Match: gi|3023956|sp|Q00808.1|HETE1_PODAS (RecName: Full=Vegetative incompatibility protein HET-E-1) HSP 1 Score: 61.6178 bits (148), Expect = 3.482e-8 Identity = 75/289 (25.95%), Postives = 117/289 (40.48%), Query Frame = 0 Query: 9 SATLSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLY---QGIDDDDPISHLAGDETLAVAVT-DERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYK-DHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMG----VVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYG 288 S T + H S+ ++PDG V + D ++++ G H G L+VA + D + + SG TI+ + A G + ++A S DG+ + +GSDD T+K+ DT + GH + SV P + + S S D T++IW+ Q ++G S VA P G+ +A DG K+W S E G VA++ DG +AS + G I IWD + T+T G+G Sbjct: 914 SGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGH--GSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSP---DGQRVASGSDDHTIKIWDAVSGTCTQTLEG--------HGDSVWSVAFSPDGQRVA---------SGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTC---TQTLEGHG 1177
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. SwissProt
Match: gi|1730231|sp|P38011.4|GBLP_YEAST (RecName: Full=Guanine nucleotide-binding protein subunit beta-like protein; AltName: Full=Receptor for activated C kinase; AltName: Full=Receptor of activated protein kinase C 1; Short=RACK1; AltName: Full=Small ribosomal subunit protein RACK1) HSP 1 Score: 59.3066 bits (142), Expect = 5.228e-8 Identity = 55/204 (26.96%), Postives = 92/204 (45.10%), Query Frame = 0 Query: 110 VSGDGRYLLAGSDDMTVKLVDTQTYKDHV-FRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKYLAIPMESSVVIYAQEDGWTKVWT----RLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPSKYELAIMDSQG 308 ++ DG Y L+ S D T++L D T + + F GH++ ++SV +D + S +S S D T+++W I G QC+ L ND + V + P K +S +I A D K W ++ A + + + + DG +ASA G I +W+ K + + LA+ P++Y LA + G Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS---MIISGSRDKTIKVWTIKG----QCLATLLGHNDWVSQ-----VRVVPNEK---ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATATG 259
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. SwissProt
Match: gi|3023855|sp|Q25306.1|GBLP_LEIMA (RecName: Full=Guanine nucleotide-binding protein subunit beta-like protein; AltName: Full=Antigen LACK) HSP 1 Score: 58.5362 bits (140), Expect = 8.452e-8 Identity = 58/236 (24.58%), Postives = 93/236 (39.41%), Query Frame = 0 Query: 74 FFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYKDHVFR--GHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAG----------ENEIQCV--------------DGLAKANDLST--------AKSP-GVVALHPKGKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYD 274 + + AS +I+ + L GQ + + T D A+A S D R +++ D +++ + H F GHE + S+ P P VS S D T+++WN+ G N + V DG A DLST +SP + P ++ + E S+ +Y E +K P+ K +AW+ DG+ L S I +W D Sbjct: 79 YALTASWDRSIRMWDLRNGQCQRKFLKHTKDVLAVAFSPDDRLIVSAGRDNVIRVWNVAGECMHEFLRDGHEDWVSSICFSPSLEHP-IVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIGFSPNRFWMCVATERSLSVYDLE---SKAVIAELTPDGAKPSECISIAWSADGNTLYSGHKDNLIRVWSISD 310
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. SwissProt
Match: gi|109892806|sp|Q2UGU1.2|LIS1_ASPOR (RecName: Full=Nuclear distribution protein nudF; AltName: Full=Lissencephaly-1 homolog; Short=LIS-1 >gi|322518681|sp|B8N9H4.2|LIS1_ASPFN RecName: Full=Nuclear distribution protein nudF; AltName: Full=Lissencephaly-1 homolog; Short=LIS-1) HSP 1 Score: 58.9214 bits (141), Expect = 1.387e-7 Identity = 52/206 (25.24%), Postives = 81/206 (39.32%), Query Frame = 0 Query: 31 DGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVT---DERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYKD----HVFRGHEAPILSVALDPRESE------------------PEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKYL 211 D + +C SD ++L++ D+ I L G + + AV V+AS N ++ + + G I T +++S DGR+L + DMT +L D T + GHE I A P S +F + S D T++IW+ G C+ L + A + HP GKYL Sbjct: 170 DNVLLASCSSDLSIKLWKPTDNYKNIRTLQGHDHIVSAVRFIPSRNLLVSASRDNDMRIWDVTTGYCVKTINGHTDWVRDVSISFDGRFLFSTGQDMTARLWDISTVSNIEHKRTMLGHENFIECCAFAPPTSYQFLAPLAGLGKRPSSTNGADFMATGSRDNTIKIWDSRG----TCLMTLVGHDSWVQA-----LVFHPGGKYL 366
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. SwissProt
Match: gi|73921814|sp|Q4WT34.1|PRP46_ASPFU (RecName: Full=Pre-mRNA-splicing factor prp46; AltName: Full=Pre-mRNA-processing protein 46) HSP 1 Score: 58.151 bits (139), Expect = 1.920e-7 Identity = 50/182 (27.47%), Postives = 80/182 (43.96%), Query Frame = 0 Query: 58 HLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYK-DHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCV------------------------DGLAKANDLSTAKSPGVVALHPKG-KYLAI 213 HL +LAV +E +F + +G TI+ ++LA G +T + LAVS YL + +D VK D +T K + GH + + ++AL PR + V+ DG R+W++ + I + D + DL+ K+ GV+ H KG + LAI Sbjct: 143 HLGWVRSLAVEPNNE-WFASGAGDRTIKIWNLATGALRLTLTGHISTVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYTLALHPRL---DLLVTGGRDGVARVWDMRTRSNIHVLSGHKGTVADLKCQEADPQIITGSLDATVRLWDLAAGKTMGVLTHHKKGVRNLAI 320
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. SwissProt
Match: gi|73921819|sp|Q5BE22.1|PRP46_EMENI (RecName: Full=Pre-mRNA-splicing factor prp46; AltName: Full=Pre-mRNA-processing protein 46) HSP 1 Score: 58.151 bits (139), Expect = 2.035e-7 Identity = 49/176 (27.84%), Postives = 78/176 (44.32%), Query Frame = 0 Query: 58 HLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYK-DHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEI-------------QC-----------VDGLAKANDLSTAKSPGVVALHPKG 208 HL +LAV +E +F + +G TI+ ++LA G +T + LAVS YL + +D VK D +T K + GH + + ++AL PR + V+ DG R+W++ + I QC +D + DL+ K+ GV+ H KG Sbjct: 142 HLGWVRSLAVEPNNE-WFASGAGDRTIKIWNLATGALRLTLTGHISTVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYTLALHPRL---DLLVTGGRDGVARVWDMRTRSNIHVLSGHTGTVADVQCQEADPQVITGSLDATVRLWDLAAGKTMGVLTHHKKG 313
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. nr
Match: gi|1207918534|ref|XP_021348121.1| (WD repeat and HMG-box DNA-binding protein 1-like isoform X2 [Mizuhopecten yessoensis] >gi|1205905990|gb|OWF52969.1| WD repeat and HMG-box DNA-binding protein 1 [Mizuhopecten yessoensis]) HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0 Identity = 369/1028 (35.89%), Postives = 551/1028 (53.60%), Query Frame = 0 Query: 11 TLSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPSK-YELAIMDSQGYWGLIDKMTFVEDNEE----QDVEEEEDV------------TKTTHDEGDLDADQLAALMEDDDDNENSFSIRKIKRDTGFLSEDDSNMSKPHFRGEDQERGVE-----PVDAPPTSGLLAPVLGGDPHYQVDIQPPFQPTATPTRLSSRFMAWNSVGVVKCFNNNEENSIEVEFHDTAIHHSFHITNAHNHSMADLSRSCLVLASEIAEDDPRASRITCRLLASSDLSPEWSIEMPPKEEVLAICCGRDWLAAATDRRLLRIFSSGGNQWEILALPGPILALAGHENWLMVTCHTGMALPGSPSVSFAVFDLRKSGRRHPAGSFTPLPFAPNTELVWIGFSDEGTPGMMDSAGQVRLLHSGFGACWTQICDTRSGLKTKSDHHFLVGISEQEHQVRTILCKGATYPGTTPPPTVALVPFALPLCEAATEKGVLEEELWKCNLLSRAL-------------RGSEPLAEVEETQSRCLIKLFALAMKNDHETRALEICKLM-DAATIGLAIRYASSNRRMQLAQRISKL----ANDALQEEQEQQRAQSQMSHADMFEDQGG----DEQAEEEEEDDTNA-----------PSNPILEAKMK-----RNLLGSGGRSRTIIPDSQGDAGRNPFARKSVPNTPSGAIRKGDTVFDDMTLKSQSSRNRGSFGDRKFKPGTGIKVKPAFGKQSTIVLKKTV-------PAKDNGAQALSPLSGFQLWLAENR 971 T+ +R+AH++G + + + G ++TCG+DG+VR++ GI+DDD ISH GD + RFF + S TN++Q ++ +G +G++TRFTA + V+ G+ ++A S D T+K V+ + +GHEAP+LSVALDP+E EF SSSCDGTVRIW +++ ++ L K ND+S +K+ + KG+ L +P+E + IY + W K T A + ++ V+A + DG LA+A+S G I + D + + + + + LAW+P K ELA D +G GL++ + D ++ Q+ +E + + T+DEG + + L D+ D+++ + K D DD MSK D + G P++ PP APV + + +Q PFQP +TP LSSRFM WNS+G++K +N +EENSI++EFH+T+IHH+ HITN ++++AD+S +VLA+E DD S++TC S D EW+ MP EE++A+ G DW+A ATD+R +R+FS GG Q E+L++PGP++ + GH N LM H GM +PG + + + R G PLP +P T L W GFS EGTP M+S+G VR+ + FG W Q+ +T+S K KSDH+++VG++E Q+R I CKG+ YP P P V+++PF + LCE TEK EE LWK L + R +E L +E L+KLFAL+ ++D E RALE+C++M + T+ LAI+YAS + M LA+RIS+L +A QEE E+ +++ H +GG DE+ +E +++ N PS P+L K K R S RS SQG S PSG+ KG VFD M K ++ +++ + KPG I VKP Q + K P + A S S F LWL ENR Sbjct: 3 TVQPLRYAHSDGHTDVCFDDSGKHMLTCGTDGDVRVWAGIEDDDAISHRVGDRVYGIVYKSGRFFTS-SDTNSVQAHTFPDGAPDGILTRFTAPVNHMVVNQSGKTMVACSSDFTIKAVEVDSCSHKTMQGHEAPVLSVALDPKE---EFVASSSCDGTVRIWQHNDHSQVTSMNILPKTNDVSLSKTMCRLCWDLKGENLFVPVEKEIHIYVRS-SWKKAGT-FQAEDIAG--VLSVLALSPDGKTLAAASSEGNILVMDVKTRKCVDRYRHPKKFSVTSLAWNPKKATELAFCDKEGQLGLLEDIKLSLDAQQSIPVQETRAKETLGIFDDDDDDDMLIQATNDEGKVGME----LGADNSDDDDQMPVIKPLGDI-----DDDTMSK----KSDLDDGASVMSDAPLELPP-----APV-AVEGYKPTPLQNPFQPGSTPVHLSSRFMVWNSIGIIKQYNTDEENSIDIEFHNTSIHHAMHITNTSHYTLADMSSEAVVLAAE--SDDGNPSKLTCMHFGSWDSCKEWTTTMPDGEEIMAVTLGEDWVAVATDKRNVRLFSLGGVQREMLSIPGPVVCMTGHTNQLMAVYHRGMGIPGDQCLGVTLMYVEGKQRTVLGGQ--PLPLSPKTALAWTGFSAEGTPFYMESSGIVRMFNRKFGPSWMQVANTKSHAKGKSDHYWIVGVNENPQQLRCIPCKGSRYPPVLPRPAVSILPFQVQLCEMNTEKSQYEETLWKTRLFGQHFDHWMSQGFEFEPSRKAESLKPAQE----ALMKLFALSARSDREFRALEVCEMMPEQHTLQLAIKYASRIKHMHLAERISELAQQKEEEAEQEEDEEDVPEARNGHLGARPKEGGHLVQDEEVMDEGDEEINMDGEEEEEEEDRPSGPMLNLKSKSEKPTRPTFISSARSSNPFKMSQG----------SQKTAPSGSA-KGTQVFDSMNRK-KTEKSKVADPVIIGKPGK-ILVKPKKSTQGNLFATKVKTDTAKSDPTNETPAPQQSTPSAFDLWLEENR 982
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. nr
Match: gi|1228001522|ref|XP_021932633.1| (WD repeat and HMG-box DNA-binding protein 1 isoform X3 [Zootermopsis nevadensis]) HSP 1 Score: 582.022 bits (1499), Expect = 0.000e+0 Identity = 323/819 (39.44%), Postives = 469/819 (57.26%), Query Frame = 0 Query: 15 MRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPK-GKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPS-KYELAIMDSQGYWGLIDKMTFVEDNEEQDVEEEEDVTKTTHDEGDLDADQLAALMEDDDDNENSFSIRKIKRDTGFLSEDDSNMSKPHFRGEDQE---RGVEPVD-----APPTSGL--LAPVLGGDPHYQVDIQPPFQPTATPTRLSSRFMAWNSVGVVKCFNNNEENSIEVEFHDTAIHHSFHITNAHNHSMADLSRSCLVLASEIAEDDPRASRITCRLLASSDLSPEWSIEMPPKEEVLAICCGRDWLAAATDRRLLRIFSSGGNQWEILALPGPILALAGHENWLMVTCHTGMALPGSPSVSFAVFDLRKSGRRHPAGSFTPLPFAPNTELVWIGFSDEGTPGMMDSAGQVRLLHSGFGACWTQICDTRSGLKTKSDHHFLVGISEQEHQVRTILCKGATYPGTTPPPTVALVPFALPLCEAATEKGVLEEELWKCNL--------LSRALRGSEPLAEVEETQSRCLIKLFALAMKNDHETRALEICKLMDA-ATIGLAIRYASSNRRMQLAQRISKLANDALQEEQE 812 MR+AHT+G + + Y+ +G ++TCG DG+VR++ G++DDDP S G++ L V ++ ++V + N +Q YS +G+I+RFTA T +A+S DG+ ++AGS DM + + + T K V GH+APIL VALDP++ ++ SSSCDGTVR+W I + + + N AK G + PK G YLA+P + IY +E W KV LS + + + A++ G++LA TS G I +W+ + T+ RGY IC LAW+P E+A D G G I+ + V +E+ T T D L+ + NEN S+ KIK + +S+P F G++ + GV D SG+ +APV D+QPPFQP++TP L RFM WNSVG+V+C++ +ENS++VEFHDT++HH+ HI N H+MA L+ LVLA EI ++ P S++ C LL S D S EWS+++P EE LAI G+ WLA ATD R LR+F+ G Q E+++LPGP++ +AGH N L+ H GM LPG S+ FAVF L SG+ +F PL P + L W GFSDEGTP +DSAG +R+ + W +CDT++ K KSDH+F++GISE+ VR +LCKG+ YP TTP P VA + LP+CEA TEK V+EE W+ L L ++ + +IKLFALA ++ E RA+EIC LM + + LA++YAS +M LA +++++A + E ++ Sbjct: 8 MRYAHTDGHTDVCYSDNGKYILTCGIDGDVRIWAGLEDDDPSSQCVGEQALTVVCKNDHYYVG-TDNNNVQAYSFPGSDRDGIISRFTAAVTHIAISNDGKRIVAGSSDMEIHVSNVGTSKTTVLTGHKAPILGVALDPKD---KYVASSSCDGTVRVWTIDDTQTVHSWNCVPVCNAFLAAKCLGRPSWQPKTGHYLAVPHGKEIRIYERET-WNKV---LSFSHDQVKQDFSISAYSPCGNYLAGCTSGGDICVWNVNLHTCVMSTRHDRGYRICGLAWNPGGNGEIAYCDVMGQLGTIEDCIPSASQDNSSVTQEK--TMTVDDMIHLNPIDDDDDDD----NENVISLDKIK----------AELSQPSFFGDNDKLSHAGVNIADDDDDVESKISGVARIAPV--------CDLQPPFQPSSTPVHLQHRFMVWNSVGIVRCYSTEDENSVDVEFHDTSLHHALHINNFFKHTMATLTDEVLVLACEIQDEAP--SKVVCVLLNSWDGSKEWSVDLPEGEEALAIAAGKGWLAVATDTRNLRLFTVAGTQREVVSLPGPVVCVAGHRNRLLTVFHNGMGLPGDQSLGFAVFSL-GSGQLQVLTAFQPLSMTPKSTLKWAGFSDEGTPFTLDSAGIIRMFSR--KSFWLPLCDTQAHCKGKSDHYFVLGISEKCQNVRCVLCKGSYYPPTTPRPAVAEISLKLPMCEATTEKSVMEERFWRLQLACSTTGDMCKMGLDSFNDKDALDRSIKETVIKLFALACRSGFEYRAVEICDLMPSHHVVQLAMKYASKLGKMNLADKVAEVATRKVDEREQ 789
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. nr
Match: gi|646704398|gb|KDR12601.1| (WD repeat and HMG-box DNA-binding protein 1 [Zootermopsis nevadensis]) HSP 1 Score: 580.482 bits (1495), Expect = 0.000e+0 Identity = 320/816 (39.22%), Postives = 467/816 (57.23%), Query Frame = 0 Query: 15 MRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPK-GKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPS-KYELAIMDSQGYWGLIDKMTFVEDNEEQDVEEEEDVTKTTHDEGDLDADQLAALMEDDDDNENSFSIRKIKRDTGFLSEDDSNMSKPHFRGEDQERG-----VEPVDAPPTSGL--LAPVLGGDPHYQVDIQPPFQPTATPTRLSSRFMAWNSVGVVKCFNNNEENSIEVEFHDTAIHHSFHITNAHNHSMADLSRSCLVLASEIAEDDPRASRITCRLLASSDLSPEWSIEMPPKEEVLAICCGRDWLAAATDRRLLRIFSSGGNQWEILALPGPILALAGHENWLMVTCHTGMALPGSPSVSFAVFDLRKSGRRHPAGSFTPLPFAPNTELVWIGFSDEGTPGMMDSAGQVRLLHSGFGACWTQICDTRSGLKTKSDHHFLVGISEQEHQVRTILCKGATYPGTTPPPTVALVPFALPLCEAATEKGVLEEELWKCNL--------LSRALRGSEPLAEVEETQSRCLIKLFALAMKNDHETRALEICKLMDA-ATIGLAIRYASSNRRMQLAQRISKLANDALQEEQE 812 MR+AHT+G + + Y+ +G ++TCG DG+VR++ G++DDDP S G++ L V ++ ++V + N +Q YS +G+I+RFTA T +A+S DG+ ++AGS DM + + + T K V GH+APIL VALDP++ ++ SSSCDGTVR+W I + + + N AK G + PK G YLA+P + IY +E W KV LS + + + A++ G++LA TS G I +W+ + T+ RGY IC LAW+P E+A D G G I+ + V +E+ T T D L+ + NEN S+ KIK + +S+P F G++ + + SG+ +APV D+QPPFQP++TP L RFM WNSVG+V+C++ +ENS++VEFHDT++HH+ HI N H+MA L+ LVLA EI ++ P S++ C LL S D S EWS+++P EE LAI G+ WLA ATD R LR+F+ G Q E+++LPGP++ +AGH N L+ H GM LPG S+ FAVF L SG+ +F PL P + L W GFSDEGTP +DSAG +R+ + W +CDT++ K KSDH+F++GISE+ VR +LCKG+ YP TTP P VA + LP+CEA TEK V+EE W+ L L ++ + +IKLFALA ++ E RA+EIC LM + + LA++YAS +M LA +++++A + E ++ Sbjct: 8 MRYAHTDGHTDVCYSDNGKYILTCGIDGDVRIWAGLEDDDPSSQCVGEQALTVVCKNDHYYVG-TDNNNVQAYSFPGSDRDGIISRFTAAVTHIAISNDGKRIVAGSSDMEIHVSNVGTSKTTVLTGHKAPILGVALDPKD---KYVASSSCDGTVRVWTIDDTQTVHSWNCVPVCNAFLAAKCLGRPSWQPKTGHYLAVPHGKEIRIYERET-WNKV---LSFSHDQVKQDFSISAYSPCGNYLAGCTSGGDICVWNVNLHTCVMSTRHDRGYRICGLAWNPGGNGEIAYCDVMGQLGTIEDCIPSASQDNSSVTQEK--TMTVDDMIHLNPIDDDDDDD----NENVISLDKIK----------AELSQPSFFGDNDKLSHAVADDDDDVESKISGVARIAPV--------CDLQPPFQPSSTPVHLQHRFMVWNSVGIVRCYSTEDENSVDVEFHDTSLHHALHINNFFKHTMATLTDEVLVLACEIQDEAP--SKVVCVLLNSWDGSKEWSVDLPEGEEALAIAAGKGWLAVATDTRNLRLFTVAGTQREVVSLPGPVVCVAGHRNRLLTVFHNGMGLPGDQSLGFAVFSL-GSGQLQVLTAFQPLSMTPKSTLKWAGFSDEGTPFTLDSAGIIRMFSR--KSFWLPLCDTQAHCKGKSDHYFVLGISEKCQNVRCVLCKGSYYPPTTPRPAVAEISLKLPMCEATTEKSVMEERFWRLQLACSTTGDMCKMGLDSFNDKDALDRSIKETVIKLFALACRSGFEYRAVEICDLMPSHHVVQLAMKYASKLGKMNLADKVAEVATRKVDEREQ 786
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. nr
Match: gi|1207918532|ref|XP_021348120.1| (WD repeat and HMG-box DNA-binding protein 1-like isoform X1 [Mizuhopecten yessoensis]) HSP 1 Score: 578.17 bits (1489), Expect = 0.000e+0 Identity = 366/1038 (35.26%), Postives = 550/1038 (52.99%), Query Frame = 0 Query: 11 TLSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPSK-YELAIMDSQGYWGLIDKMTFVEDNEE----QDVEEEEDV------------TKTTHDEGDLDADQLAALMEDDDDNENSFSIRKIKRDTGFLSEDDSNMSKPHFRGEDQERGVE-----PVDAPPTSGLLAPVLGGDPHYQVDIQPPFQPTATPTRLSSRFMAWNSVGVVKCFNNNEENSIEVEFHDTAIHHSFHITNAHNHSMADLSRSCLVLASEIAEDDPRASRITCRLLASSDLSPEWSIEMPPKEEVLAICCGRDWLAAATDRRLLRIFSSGGNQWEILALPGPILALAGHENWLMVTCHTGMALPGSPSVSFAVFDLRKSGRRHPAGSFTPLPFAPNTELVWIGFSDEGTPGMMDSAGQVRLLHSGFGACWTQICDTRSGLKTKSDHHFLVGISEQEHQVRTILCKGATYPGTTPPPTVALVPFALPLCEAATEKGVLEEELWKCNLLSRAL-------------RGSEPLAEVEETQSRCLIKLFALAMKNDHETRALEICKLM-DAATIGLAIRYASSNRRMQLAQRISKLANDALQEEQEQQRAQS--------------QMSHADMFEDQGG----DEQAEEEEEDDTNA-----------PSNPILEAKMK-----RNLLGSGGRSRTIIPDSQGDAGRNPFARKSVPNTPSGAIRKGDTVFDDMTLKSQSSRNRGSFGDRKFKPGTGIKVKPAFGKQSTIVLKKTV-------PAKDNGAQALSPLSGFQLWLAENR 971 T+ +R+AH++G + + + G ++TCG+DG+VR++ GI+DDD ISH GD + RFF + S TN++Q ++ +G +G++TRFTA + V+ G+ ++A S D T+K V+ + +GHEAP+LSVALDP+E EF SSSCDGTVRIW +++ ++ L K ND+S +K+ + KG+ L +P+E + IY + W K T A + ++ V+A + DG LA+A+S G I + D + + + + + LAW+P K ELA D +G GL++ + D ++ Q+ +E + + T+DEG + + L D+ D+++ + K D DD MSK D + G P++ PP APV + + +Q PFQP +TP LSSRFM WNS+G++K +N +EENSI++EFH+T+IHH+ HITN ++++AD+S +VLA+E DD S++TC S D EW+ MP EE++A+ G DW+A ATD+R +R+FS GG Q E+L++PGP++ + GH N LM H GM +PG + + + R G PLP +P T L W GFS EGTP M+S+G VR+ + FG W Q+ +T+S K KSDH+++VG++E Q+R I CKG+ YP P P V+++PF + LCE TEK EE LWK L + R +E L +E L+KLFAL+ ++D E RALE+C++M + T+ LAI+YAS + M LA+RIS+LA +E ++++ + + H +GG DE+ +E +++ N PS P+L K K R S RS SQG S PSG+ KG VFD M K ++ +++ + KPG I VKP Q + K P + A S S F LWL ENR Sbjct: 3 TVQPLRYAHSDGHTDVCFDDSGKHMLTCGTDGDVRVWAGIEDDDAISHRVGDRVYGIVYKSGRFFTS-SDTNSVQAHTFPDGAPDGILTRFTAPVNHMVVNQSGKTMVACSSDFTIKAVEVDSCSHKTMQGHEAPVLSVALDPKE---EFVASSSCDGTVRIWQHNDHSQVTSMNILPKTNDVSLSKTMCRLCWDLKGENLFVPVEKEIHIYVRS-SWKKAGT-FQAEDIAG--VLSVLALSPDGKTLAAASSEGNILVMDVKTRKCVDRYRHPKKFSVTSLAWNPKKATELAFCDKEGQLGLLEDIKLSLDAQQSIPVQETRAKETLGIFDDDDDDDMLIQATNDEGKVGME----LGADNSDDDDQMPVIKPLGDI-----DDDTMSK----KSDLDDGASVMSDAPLELPP-----APV-AVEGYKPTPLQNPFQPGSTPVHLSSRFMVWNSIGIIKQYNTDEENSIDIEFHNTSIHHAMHITNTSHYTLADMSSEAVVLAAE--SDDGNPSKLTCMHFGSWDSCKEWTTTMPDGEEIMAVTLGEDWVAVATDKRNVRLFSLGGVQREMLSIPGPVVCMTGHTNQLMAVYHRGMGIPGDQCLGVTLMYVEGKQRTVLGGQ--PLPLSPKTALAWTGFSAEGTPFYMESSGIVRMFNRKFGPSWMQVANTKSHAKGKSDHYWIVGVNENPQQLRCIPCKGSRYPPVLPRPAVSILPFQVQLCEMNTEKSQYEETLWKTRLFGQHFDHWMSQGFEFEPSRKAESLKPAQE----ALMKLFALSARSDREFRALEVCEMMPEQHTLQLAIKYASRIKHMHLAERISELAQQKEEEAEQEEDEEDVPEASYNPVTDWAGRNGHLGARPKEGGHLVQDEEVMDEGDEEINMDGEEEEEEEDRPSGPMLNLKSKSEKPTRPTFISSARSSNPFKMSQG----------SQKTAPSGSA-KGTQVFDSMNRK-KTEKSKVADPVIIGKPGK-ILVKPKKSTQGNLFATKVKTDTAKSDPTNETPAPQQSTPSAFDLWLEENR 992
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. nr
Match: gi|762156940|ref|XP_011416613.1| (PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X1 [Crassostrea gigas] >gi|405975316|gb|EKC39890.1| WD repeat and HMG-box DNA-binding protein 1 [Crassostrea gigas]) HSP 1 Score: 572.392 bits (1474), Expect = 0.000e+0 Identity = 361/1056 (34.19%), Postives = 547/1056 (51.80%), Query Frame = 0 Query: 11 TLSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPS-KYELAIMDSQGYWGLIDKMTFVEDNEEQDVEEEEDVTKTTHDEGDLDADQLAALMEDDDDNENSFSIRKIKRDTGFLSEDDSNMSKPH--FRGEDQERGVEPVDAPPTSGLLAPVLGGDPHYQVDIQPPFQPTATPTRLSSRFMAWNSVGVVKCFNNNEENSIEVEFHDTAIHHSFHITNAHNHSMADLSRSCLVLASEIAEDDPRASRITCRLLASSDLSPEWSIEMPPKEEVLAICCGRDWLAAATDRRLLRIFSSGGNQWEILALPGPILALAGHENWLMVTCHTGMALPGSPSVSFAVFDLRKSGRRHPAGSFTPLPFAPNTELVWIGFSDEGTPGMMDSAGQVRLLHSGFGACWTQICDTRSGLKTKSDHHFLVGISEQEHQVRTILCKGATYPGTTPPPTVALVPFALPLCEAATEKGVLEEELWKCNLLSRALRGSEPL---------AEVEETQSRCLIKLFALAMKNDHETRALEICKLM-DAATIGLAIRYASSNRRMQLAQRISKLANDALQEE------------QEQQRAQSQMSHADMFEDQGGDEQAEEEEEDDTNAPSNPILEAKMKRNLLGSGGRSRTIIPDSQGDAGR-NPFARKSVPNTPSGAIRKGDTVFDDMTLKSQSSRNRGSFGDRKFKPGTGIKVKPAFGKQSTIVLKKTVPAKDNGAQALSPLSGFQLWLAENRGQVAAICDSGTEDSAINIKG----------LEMWKQLKKEDKDQYRS---PRVPKRKSEDELTASPASK 1027 + S +R+AH+EG +SL Y G ++TCGSDG+VR+++G +DDD ISH GD+ VA ++RF++A NT+Q Y+ G +G++ RFTA + ++ G L+AGS D T+KLVD + F GHEAP+LSVALDP+E EF SSSCDG+V IW + + +++ L K D+S K + G++L +P+E+ + IY + W+ T S + + V+ + DG LA+ G I I+D K+ K G I L+W+PS + E+A D +G GL+ ++ N+ +E+ V +T L +DDDD E + + ++ F ++DSN S P + D + E +APP + ++ Q FQP +TP LSSRFM WN+VG++K FN EE SI++EFH+TAIHH+ H+TN+ ++M D+S +VLAS + DP S++TC S D S EW+I M E + A+ G DW+A AT RL+RIFS GG Q +I ++PGP++ L+ H N L++ H GM LPG + + + + + + PLP + + L W+GFS EGTP MDS+G VR+ + FG W Q+ +T+S K KSD++++V + E Q+R I CKGA +P P P V ++PF +PLC+ TEK EE + LLS L+ + +E+ + L+KLFAL+ ++D E RALE+C++M + T+ LAI+YA + MQLA+RIS++ E+ QR + +H E+ ++ ++E +TN+ P+L K K ++ S G +GR NPF + P P KG VFD M+ K Q+S G + +P +K P + T V K +Q S S F LW E + Q+ E+S + ++W Q KE ++ R +P RK +L SK Sbjct: 3 SCSPLRYAHSEGLTSLCYDDKGKYILTCGSDGDVRIWEGAEDDDAISHGTGDKAFCVAYKNDRFYIATDA-NTVQAYTFPGGSPDGILARFTAPANHICINQMGTTLVAGSSDFTIKLVDISSGDTKKFEGHEAPVLSVALDPKE---EFLASSSCDGSVVIWRVENKEKVKKFQILPKVGDISLTKGLCRLCWEKNGQFLYVPLENEIQIY-NRNSWS---TTGSIQDSQFSGVYSVLDLSPDGTHLAAGCYDGHILIFDLKTKTCVDRFKHESGLSIMSLSWNPSNQTEIAFCDREGQLGLLSEINLKGGNQPA---KEQRVKET-----------LGIFEDDDDDAELVQASDEPSKEQIF--DEDSNDSTPASVLKPLDDDLASEDGEAPPVIPVQTRIIERPGFVPTPPQGAFQPGSTPKHLSSRFMMWNAVGIIKQFNTEEEESIDIEFHNTAIHHAMHLTNSAGYTMGDVSTEAVVLASPGEDSDP--SKLTCMHFGSWDNSKEWTIPMDDGEAIEALAIGEDWIAVATSGRLIRIFSLGGIQRDIFSIPGPVVCLSAHTNQLLIAYHRGMGLPGDQCLGVHLMTVEGATQIN----HQPLPLSHKSSLAWMGFSAEGTPFYMDSSGIVRMCNRRFGMSWVQVANTKSHTKGKSDNYWIVSVHENPQQLRCIPCKGARFPPVLPRPAVGILPFQVPLCQMNTEKSQYEEVFHRTQLLSSHLQFWNTIGYEYDTSIASELAKPSQEALMKLFALSARSDREFRALEVCEMMSEPHTLQLAIKYACRLKYMQLAERISEVVQRKSAEQAEEVEEEEEEVVHRVQRVHNHQNHVQEDEEMEEEDVEVDQENAETNSAGGPLLNLKAKSK--------NEVLSQSYGSSGRSNPF-KVLTPQKPEPT--KGTQVFDGMSKKKQTS--PGQVMLKNTRPVKAVKRTPQSQGKITSVKSTNEEDKQEESQKKSK-SAFDLWFEETKSQLMEELPEADEESLVQTAAERFRKIPKEERQIWIQKSKEGDNKKRKREEEEIPTRKVNPKLAGFAFSK 1014
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. nr
Match: gi|927131962|ref|XP_013910237.1| (PREDICTED: WD repeat and HMG-box DNA-binding protein 1 [Thamnophis sirtalis]) HSP 1 Score: 570.081 bits (1468), Expect = 0.000e+0 Identity = 367/1092 (33.61%), Postives = 562/1092 (51.47%), Query Frame = 0 Query: 1 MSSAAPRGSATLSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVD-TQTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPK-GKYLAIPMESSVVIYAQEDGWTKVWTR-LSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPSKYELAIMDSQGYWGLIDKMTFVEDNEEQ---------------DVEEEEDVTKTTHDEGDLDADQLAALMEDDDDNENSFSIRKIKRDTGFLSEDDSN-MSKPHFRGE---DQERGVEPVDAPPTSGLLA---PVLGGDPHYQVDIQPPFQPTATPTRLSSRFMAWNSVGVVKCFNNNEENSIEVEFHDTAIHHSFHITNAHNHSMADLSRSCLVLASEIAEDDPRASRITCRLLASSDLSPEWSIEMPPKEEVLAICCGRDWLAAATDRRLLRIFSSGGNQWEILALPGPILALAGHENWLMVTCHTGMALPGSPSVSFAVFDLRKSGRRHPAGSFTPLPFAPNTELVWIGFSDEGTPGMMDSAGQVRLLHSGFGACWTQICDTRSGLKTKSDHHFLVGISEQEHQVRTILCKGATYPGTTPPPTVALVPFALPLCEAATEKGVLEEELWKCNLLSR-----ALRGSEPLAEVE----ETQSRCLIKLFALAMKNDHETRALEICKLMDAATIGLAIRYASSNRRMQLAQRISKLANDALQEEQEQ-------------------------QRAQSQMSHADMFEDQGGDEQAEEEEEDDTNAPSNPILEAKMKR-NLLGSGGRSRTIIPDSQGDAGRNPFARKSVPNTPSGAIRKGDTVFDDM--------TLKSQSSRNRGSFGDRKF--KPGTGIKVKPAFGKQSTIVLKK-----------TVPA--------KDNGAQALSPLSGFQLWLAENRGQVAAICDSGTEDSAINIKGLEMWKQLKKEDK 1003 MSS P MR+ HTEG++ + + GS +VTCGSDG+VR ++ +DDDDP S G++ + A+ + R A S NT+Q ++ EG +G++TRFT + + + DG + GS D VK+VD T + FRGH+AP+LSV+LDP ++ + S+SCDG+VR+W I+ +N L K ND+ AKS +A PK GK LAIP+E ++ +Y +E W L + + + VVAW+ G +LA+ + G + IW + K +GY +C LAWHP +LA D++G GL++ + VE + D +++ED E D AA ++D+D+ S R R+ G + EDD N + + D+E G + +D P LL+ PV G Q PFQ +TP L+ RFM WNS+G+++C+N+ ++N+I+VEFHDTAIHH+ H+ N NH+MADLS ++LA E E+ AS++ C S D + EW+++M E++ A+C G+ W A AT LLR+F+ GG Q EI + PGP++++AGH L+V H G G + + +L K R+ G LP + + L W+GFS EGTP +DS G VR+L+ G WT +C+TR K KSDH+++VGI E Q+R ILCKGA +P T P P V+++PF LP C+ ATEKG +EE+ W+ L + G E V+ + Q L+K+FAL+ + E R +E+ +LM LAI+YAS +RR+ LAQ++S+LA + + E + ++ SHA ++ Q +E D+ N + EAK L G+ S++ + S NPF V ++ A + D++ T+ Q + N+ S + KP + AF + + +K TVP+ KDN P +GFQ+WL ENR + + + E++ I +G+ ++ L E++ Sbjct: 49 MSSQKP--------MRYGHTEGQTDVCFNDTGSCIVTCGSDGDVRFWENLDDDDPKSINVGEKAYSFALKNGRLITAVS-NNTVQIHTFPEGLPDGILTRFTTNANHVVFNADGSKVAVGSSDFLVKIVDVTDNSQQKTFRGHDAPVLSVSLDPTDT---YLASASCDGSVRVWKISEQNCEISWPLLQKCNDVINAKSLCRLAWQPKIGKLLAIPVEKTIKLYRRE-----TWAHELDLSDNFITQPLNVVAWSPCGQYLAAGSIGGYMVIWKVETQECLERVKHEKGYTVCGLAWHPKGGQLAYTDTEGNLGLLENVCDVERKKSIHKAPNSSIKSYDDLFDEDDKEDFLNRDFSEDDWGTK--AATNDEDEDDLKMASGRP--RNRGAIIEDDENSLDTGLLKANSVLDKEEGEDDLDNFPVQPLLSDQRPVYSGP--LPTPRQKPFQSGSTPAHLTHRFMMWNSLGIIRCYNDEQDNAIDVEFHDTAIHHAMHLPNNLNHTMADLSSEAILLACESTEE--LASKLHCIHFNSWDANKEWTVDMLQDEDIEAVCLGQGWAACATSSLLLRVFTIGGLQKEIFSFPGPVVSMAGHGEQLLVVFHKGTGFEGDQCLGIQLLELGKKKRQILHGE--SLPLSRKSYLAWVGFSAEGTPCYVDSEGIVRMLNRKHGNIWTPVCNTREHCKGKSDHYWIVGIHENPQQLRCILCKGARFPATLPRPAVSVLPFKLPFCQTATEKGQMEEQFWRSVLFHNYSDYLSQNGYEYDESVKGQAVQEQQNLLMKMFALSCTLEREFRCMELAELMTQNATSLAIKYASRSRRLILAQKLSELAAEKVSELASAEEYAEQEEEEEKQQPDFRNHLNAGYSNSPTEWSHA---REKNIQRQQNKETHDEDEEKVNVLQEAKSSSPTLHGNASASKSAVTASSNSIRVNPF---KVSSSQKDAFVHSPNILDNLTRLPKKNPTVNGQGAPNKKSQIIKPLTPKPKSKQPAATAFFQPRALTTEKKAREDREDKNDTVPSELQTVTENKDNK----RPKTGFQMWLEENRSSILSD-NPHFEETEIIKEGMVRYRGLSAEER 1102
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. nr
Match: gi|585690153|ref|XP_006894404.1| (PREDICTED: WD repeat and HMG-box DNA-binding protein 1 [Elephantulus edwardii]) HSP 1 Score: 565.844 bits (1457), Expect = 0.000e+0 Identity = 355/1084 (32.75%), Postives = 552/1084 (50.92%), Query Frame = 0 Query: 10 ATLSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDT-QTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPK-GKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPSKYELAIMDSQGYWGLIDKMTFVE--------DNEEQDVEEEEDVTKTTHDEGDLDADQLA------ALMEDDDDNENSFSIRKIKRDTGFLSEDDSNM--------SKPHFRGEDQERGVEPVDAPPTSGLLAPVLGGDPHYQVDIQPPFQPTATPTRLSSRFMAWNSVGVVKCFNNNEENSIEVEFHDTAIHHSFHITNAHNHSMADLSRSCLVLASEIAEDDPRASRITCRLLASSDLSPEWSIEMPPKEEVLAICCGRDWLAAATDRRLLRIFSSGGNQWEILALPGPILALAGHENWLMVTCHTGMALPGSPSVSFAVFDLRKSGRRHPAGSFTPLPFAPNTELVWIGFSDEGTPGMMDSAGQVRLLHSGFGACWTQICDTRSGLKTKSDHHFLVGISEQEHQVRTILCKGATYPGTTPPPTVALVPFALPLCEAATEKGVLEEELWKC----NLLSRALRGSEPLAEVEETQS-----RCLIKLFALAMKNDHETRALEICKLMDAATIGLAIRYASSNRRMQLAQRISKLANDALQEEQEQQ---------RAQSQMSHAD------------MFEDQGGDEQAE----EEEEDDTNAPSNPILEAKMKRNLLGSGGRSRTIIPDSQGDAGRNPFARKSVPNTPSGAIRKGDT--VFDDMTLKSQSS--RNRGS-------------------------FGDRKFKPGTGIKVKPAFGKQSTIVLKKTVPAKDNGAQALSPLSGFQLWLAENRGQVAAICDSGTEDSAINIKGLEMWKQLKKEDKDQY 1006 AT MR+ HTEG + + + GS +VTCGSDG+VR+++ +DDDDP S G++ + A+ + + A S NTIQ ++ EG +G++TRFT + + + DG + AGS D VK+V+ + + FRGHEAP+LS++ DP++ F S+SCDG+VR+W I+ + L K ND+ AKS +A PK GK LAIP+E SV Y +E W+ + + + + +V W+ G +LA+ + G I +W+ K K +GY IC LAWHP+ +A D++G GL++ + + N + ++ + GD D + D +D+++ R + EDD N S R E+ V+ + + P P G Q PFQ +TP L+ RFM WNSVG+++C+N+ ++N+I+VEFHDT+IHH+ H++N N+++ADLS ++LA E D AS++ C +S D S EW ++MP E+V AIC G+ W AAAT LLR+F+ GG Q E+ +L GP++++AGH L++ H G G + + +L + ++ G PLP + + L W+GFS EGTP +DS G VR+L+ G G WT +CDTR K KSDH+++VGI E Q+R I CKG+ +P T P P +A++ F LP C+ ATEKG +EE+ W+ N L + E +TQ+ LIK+FAL+ K + E R +E+ LM + LAI+YAS +R++ LAQR+S+LA + E Q R QS + D E++ G+ E EE+ + NP + ++ +S +I +QG A NPF + P P+ + G + + D++ S+ S NR + F R + G VK K S+ +T A ++ P +GFQ+WL ENR + + +E++ I +G+ ++ L E++ + Sbjct: 3 ATQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWEDLDDDDPKSINVGEKAYSCALKNGKLVTAVSN-NTIQVHTFPEGVPDGILTRFTTNANHVIFNEDGAKIAAGSSDFLVKVVEVLDSSQQKTFRGHEAPVLSLSFDPKDV---FLASASCDGSVRVWQISDQTCSVSWPLLQKCNDVINAKSICRLAWQPKSGKLLAIPVEKSVKFYRRE-AWS---NQFDLSDDFISQTLNIVTWSPCGQYLAAGSINGSIIVWNVETKDCLERVKHEKGYSICGLAWHPTCGRIAYTDAEGNLGLLENVCDLSGKKSSNKVSNRVEKDYDDLFDGDDASNAGDFLNDNSVETPFSKGITNDGEDDDDLMLTSSRHRLRSHILEDDENSVDVTLLKNSSSLLRDEEDGNQVDNIRSLPLKTSQKPFYDGP--MPTPRQKPFQSGSTPLHLTHRFMMWNSVGIIRCYNDEQDNAIDVEFHDTSIHHATHLSNTLNYTVADLSHEAILLACEGT--DELASKLHCLHFSSWDSSKEWMVDMPEHEDVEAICLGQGWAAAATSTLLLRLFTIGGVQKEVFSLLGPVVSMAGHGEQLLIVYHRGTGFDGDQCLGVQLLELGRKKKQILHGD--PLPLSKKSYLAWVGFSAEGTPCYVDSEGIVRMLNRGLGNTWTPVCDTREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPALAILSFKLPYCQTATEKGQMEEQFWRSVMFHNYLDYLAKNDYEYKESTKTQAVREQQELLIKMFALSCKLEREFRCVELADLMTQNAVSLAIKYASRSRKLILAQRLSELAMEKTAESAATQEDEEEEEDYRKQSNADNCDTVSEWNQPRVRNQVEEEDGEHSGEVDEVEEKPEIRKTGQNPFSKNANSSDV--PANKSGAVISSNQGRA--NPFKVSASPKEPAVLVNTGRSTNILDNINKSSKKSIVLNRSANNEKSPVIKPLIPKPKSKQASAASYFQKRNSQAGKVDDVKEETPKISS---SETPVASPQNTESPRPRTGFQMWLEENRNNILSDNPDFSEEADIIKEGMLRFRVLSAEERKAW 1065
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. nr
Match: gi|1139847198|ref|XP_019919679.1| (PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Crassostrea gigas]) HSP 1 Score: 559.681 bits (1441), Expect = 1.108e-180 Identity = 337/949 (35.51%), Postives = 511/949 (53.85%), Query Frame = 0 Query: 11 TLSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDTQTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPKGKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPS-KYELAIMDSQGYWGLIDKMTFVEDNEEQDVEEEEDVTKTTHDEGDLDADQLAALMEDDDDNENSFSIRKIKRDTGFLSEDDSNMSKPH--FRGEDQERGVEPVDAPPTSGLLAPVLGGDPHYQVDIQPPFQPTATPTRLSSRFMAWNSVGVVKCFNNNEENSIEVEFHDTAIHHSFHITNAHNHSMADLSRSCLVLASEIAEDDPRASRITCRLLASSDLSPEWSIEMPPKEEVLAICCGRDWLAAATDRRLLRIFSSGGNQWEILALPGPILALAGHENWLMVTCHTGMALPGSPSVSFAVFDLRKSGRRHPAGSFTPLPFAPNTELVWIGFSDEGTPGMMDSAGQVRLLHSGFGACWTQICDTRSGLKTKSDHHFLVGISEQEHQVRTILCKGATYPGTTPPPTVALVPFALPLCEAATEKGVLEEELWKCNLLSRALR---------GSEPLAEVEETQSRCLIKLFALAMKNDHETRALEICKLM-DAATIGLAIRYASSNRRMQLAQRISKLANDALQEE------------QEQQRAQSQMSHADMFEDQGGDEQAEEEEEDDTNAPSNPILEAKMKRNLLGSGGRSRTIIPDSQGDAGR-NPFARKSVPNTPSGAIRKGDTVFDDMTLKSQSSRNRGSFGDRKFKPGTGIKVKP 933 + S +R+AH+EG +SL Y G ++TCGSDG+VR+++G +DDD ISH GD+ VA ++RF++A NT+Q Y+ G +G++ RFTA + ++ G L+AGS D T+KLVD + F GHEAP+LSVALDP+E EF SSSCDG+V IW + + +++ L K D+S K + G++L +P+E+ + IY + W+ T S + + V+ + DG LA+ G I I+D K+ K G I L+W+PS + E+A D +G GL+ ++ N+ +E+ V +T L +DDDD E + + ++ F ++DSN S P + D + E +APP + ++ Q FQP +TP LSSRFM WN+VG++K FN EE SI++EFH+TAIHH+ H+TN+ ++M D+S +VLAS + DP S++TC S D S EW+I M E + A+ G DW+A AT RL+RIFS GG Q +I ++PGP++ L+ H N L++ H GM LPG + + + + + + PLP + + L W+GFS EGTP MDS+G VR+ + FG W Q+ +T+S K KSD++++V + E Q+R I CKGA +P P P V ++PF +PLC+ TEK EE + LLS L+ + +E+ + L+KLFAL+ ++D E RALE+C++M + T+ LAI+YA + MQLA+RIS++ E+ QR + +H E+ ++ ++E +TN+ P+L K K ++ S G +GR NPF + P P KG VFD M+ K Q+S G + +P +K P Sbjct: 3 SCSPLRYAHSEGLTSLCYDDKGKYILTCGSDGDVRIWEGAEDDDAISHGTGDKAFCVAYKNDRFYIATDA-NTVQAYTFPGGSPDGILARFTAPANHICINQMGTTLVAGSSDFTIKLVDISSGDTKKFEGHEAPVLSVALDPKE---EFLASSSCDGSVVIWRVENKEKVKKFQILPKVGDISLTKGLCRLCWEKNGQFLYVPLENEIQIY-NRNSWS---TTGSIQDSQFSGVYSVLDLSPDGTHLAAGCYDGHILIFDLKTKTCVDRFKHESGLSIMSLSWNPSNQTEIAFCDREGQLGLLSEINLKGGNQP---AKEQRVKET-----------LGIFEDDDDDAELVQASDEPSKEQIF--DEDSNDSTPASVLKPLDDDLASEDGEAPPVIPVQTRIIERPGFVPTPPQGAFQPGSTPKHLSSRFMMWNAVGIIKQFNTEEEESIDIEFHNTAIHHAMHLTNSAGYTMGDVSTEAVVLASPGEDSDP--SKLTCMHFGSWDNSKEWTIPMDDGEAIEALAIGEDWIAVATSGRLIRIFSLGGIQRDIFSIPGPVVCLSAHTNQLLIAYHRGMGLPGDQCLGVHLMTVEGATQIN----HQPLPLSHKSSLAWMGFSAEGTPFYMDSSGIVRMCNRRFGMSWVQVANTKSHTKGKSDNYWIVSVHENPQQLRCIPCKGARFPPVLPRPAVGILPFQVPLCQMNTEKSQYEEVFHRTQLLSSHLQFWNTIGYEYDTSIASELAKPSQEALMKLFALSARSDREFRALEVCEMMSEPHTLQLAIKYACRLKYMQLAERISEVVQRKSAEQAEEVEEEEEEVVHRVQRVHNHQNHVQEDEEMEEEDVEVDQENAETNSAGGPLLNLKAKSK--------NEVLSQSYGSSGRSNPF-KVLTPQKPEPT--KGTQVFDGMSKKKQTS--PGQVMLKNTRPVKAVKRTP 908
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. nr
Match: gi|975108640|ref|XP_015269826.1| (PREDICTED: WD repeat and HMG-box DNA-binding protein 1 [Gekko japonicus]) HSP 1 Score: 564.688 bits (1454), Expect = 3.328e-180 Identity = 315/828 (38.04%), Postives = 476/828 (57.49%), Query Frame = 0 Query: 15 MRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVDT-QTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHPK-GKYLAIPMESSVVIYAQEDGWTKVW----TRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPSKYELAIMDSQGYWGLIDKMTFVEDNEEQDVEEEEDVTKTTH-------DEGDLDAD--------QLAALMEDDDDNENSFSIRKIKRDTGFLSEDDSNM---------SKPHFRGEDQERGVEPVDAPPTSGLLAPVLGGDPHYQVDIQPPFQPTATPTRLSSRFMAWNSVGVVKCFNNNEENSIEVEFHDTAIHHSFHITNAHNHSMADLSRSCLVLASEIAEDDPRASRITCRLLASSDLSPEWSIEMPPKEEVLAICCGRDWLAAATDRRLLRIFSSGGNQWEILALPGPILALAGHENWLMVTCHTGMALPGSPSVSFAVFDLRKSGRRHPAGSFTPLPFAPNTELVWIGFSDEGTPGMMDSAGQVRLLHSGFGACWTQICDTRSGLKTKSDHHFLVGISEQEHQVRTILCKGATYPGTTPPPTVALVPFALPLCEAATEKGVLEEELWKCNLLSRALRG-SEPLAEVEET--------QSRCLIKLFALAMKNDHETRALEICKLMDAATIGLAIRYASSNRRMQLAQRISKLA 803 MR+ HTEG + + + GS +VTCGSDG+VR+++ +DDDDP S G++ + A+ + + AAS N +Q ++ +G +G++TRFT + +A + DG + AGS D VK+V+ + + FRGH+AP+LSV+ DP+++ F S+SCDG+VR+W IA + + L K ND+ AKS +A PK GK+LAIP+E V +Y + D W + + +S P + VVAW+ G F+A+ + G I +W+ + K +GY IC LAWHP ++A D++G GL++ + D ++ + + +K +E L+ D + ED+DD+ S R R+ G + EDD N S P +GE++++ P PP S P G Q PFQ +TP L+ RFM WNS+G+++C+N+ ++N+IEVEFHDTAIHH+ H+ N+ NH+MADLS ++LA E E+ S++ C S D + EW+++MPP E++ AIC G+ W A AT L+R+F+ GG Q E+ +LPGP++++AGH L+V H G G + + +L K R+ G PLP + + L W+GFS EGTP +DS G VR+L+ G G WT +CDTR K KSDH ++VGI E Q+R I CKGA +P T P P VA++PF LP C+ AT+KG +EE+ W+ L L S+ E +E+ Q L+K+FAL+ + E R +E+ +LM + LA++YAS +R++ LAQR+S+LA Sbjct: 8 MRYGHTEGHTDVCFNDAGSCIVTCGSDGDVRIWESLDDDDPKSINVGEKAYSFALKNGKLITAAS-NNAVQIHTFPDGVPDGILTRFTMNANHVAFNADGSKVAAGSSDFLVKIVEVADSSQQKTFRGHDAPVLSVSFDPQDA---FLASASCDGSVRVWKIAEQICEKSWPLLQKCNDVVDAKSICRLAWQPKKGKFLAIPVEKVVKLY-RRDTWEQQFDLSDNFISQP-------LNVVAWSPCGQFVAAGSVGGCIVVWNVDTQECLERVKHEKGYTICGLAWHPEGSQVAYTDTEGNLGLLENVCGA-DRKQSNTKASAPASKDYDDLFDEDDNEDFLNRDFIEPQSSPKAVTNYEDEDDDLTVASGRP--RNRGAIIEDDENSIDLGLLKASSAPDKQGEEEDQESLP-PVPPQSSTQRPFYDGP--VPTPRQKPFQSGSTPVHLTHRFMVWNSIGIIRCYNDEQDNAIEVEFHDTAIHHAMHLPNSLNHTMADLSSEAILLACESTEE--LVSKLHCIHFNSWDSNKEWTVDMPPDEDIEAICLGQGWAACATSALLVRVFTVGGVQKEVFSLPGPVVSVAGHGEQLLVVFHRGTGFDGDQCLGIQLVELGKKKRQILHGD--PLPLSWKSYLTWVGFSAEGTPSYVDSKGVVRMLNRGLGNTWTPVCDTREHSKGKSDHCWIVGIHESPQQLRCIPCKGAKFPPTLPRPAVAVLPFKLPFCQTATDKGQMEEQFWRSVLFHNYLEYLSQNGYECDESAKSRASQEQQNLLMKMFALSCTLEREFRCMELAELMTQNAMSLAVKYASRSRKLNLAQRLSELA 813
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. nr
Match: gi|529446720|ref|XP_005243064.1| (PREDICTED: WD repeat and HMG-box DNA-binding protein 1 [Falco peregrinus]) HSP 1 Score: 563.918 bits (1452), Expect = 3.800e-180 Identity = 364/1098 (33.15%), Postives = 561/1098 (51.09%), Query Frame = 0 Query: 10 ATLSAMRFAHTEGRSSLRYTPDGSTVVTCGSDGEVRLYQGIDDDDPISHLAGDETLAVAVTDERFFVAASGTNTIQGYSLAEGQSEGVITRFTADGTALAVSGDGRYLLAGSDDMTVKLVD-TQTYKDHVFRGHEAPILSVALDPRESEPEFAVSSSCDGTVRIWNIAGENEIQCVDGLAKANDLSTAKSPGVVALHP-KGKYLAIPMESSVVIYAQEDGWTKVWTRLSAPNPPKDEIMGVVAWAKDGDFLASATSTGRIFIWDFYDKSLAFETKTTRGYGICDLAWHPSKYELAIMDSQGYWGLI----------DKMTFVEDNEEQDVEEEEDVTKTTHDEGDLDADQLAALMEDDDD--------------NENSFSIRKIKRDTGFLSEDDSNMSKPHFRGEDQERGVEPVDAPPTSGLLAPVLGGDPHYQVDIQPPFQPTATPTRLSSRFMAWNSVGVVKCFNNNEENSIEVEFHDTAIHHSFHITNAHNHSMADLSRSCLVLASEIAEDDPRASRITCRLLASSDLSPEWSIEMPPKEEVLAICCGRDWLAAATDRRLLRIFSSGGNQWEILALPGPILALAGHENWLMVTCHTGMALPGSPSVSFAVFDLRKSGRRHPAGSFTPLPFAPNTELVWIGFSDEGTPGMMDSAGQVRLLHSGFGACWTQICDTRSGLKTKSDHHFLVGISEQEHQVRTILCKGATYPGTTPPPTVALVPFALPLCEAATEKGVLEEELWK----CNLLSRALRGSEPLAEVEETQS-----RCLIKLFALAMKNDHETRALEICKLMDAATIGLAIRYASSNRRMQLAQRISKLANDALQ------EEQEQQRAQ------------SQMSHADMFEDQ--------GGDEQAEEEEEDDTNAPSNPILEAKMKRNLLGSGGRSRTIIPDSQGDAGRNPFARKSVPNTPSGAIRKGDTVFDDMTLKSQSSRNRGSFGDRKFKPGTGIKVKPAFGKQSTIVLKKTVPAKDNGAQALS------------------------------------------PLSGFQLWLAENRGQVAAICDSGTEDSAINIK-GLEMWKQLKKEDK 1003 +T MR+ HTEG + + + GS +VTCGSDG+VR+++ +DDDDP S G++ + A+ + + A S NT+Q ++ EG +G++TRFT + + + DG + AGS D VK+V+ T + K FRGH+AP+LS++ DPR+ + S+SCDG+VR+W IA + L K ND+ +AKS + P GK LAIP++ V +Y + W ++L + + + VVAW+ G +LA+A+ G I +W+ + + + Y IC LAWHP ++A D++G GL+ DK+ + + D+ + ED + D + + A ED+DD ++NS I IK ++ L ++D +DQ G A P+S G P Q Q PFQ +TP L+ RFM WNSVG+++C+N+ ++N+I+VEFHDT+IHH+ H+ N+ NH+MADLS ++LA E E+ AS++ C +S D + EW+++MP E++ A+C G+ W A AT L+R+F+ GG Q EI +LPGP++++AGH LMV H G G + + +L K + G PL + L W+GFS EGTP +DS G VR+L+ G G W +C+TR K +SDH+++VGI E Q+R I CKGA +P T P P VA++PF LP C+ TEKG +EE+ W+ N + L+ + E ++QS L+KLFAL+ K + E R +E+ LM + LAI+YAS +R++ LAQR++++A + + E++E R SQ+ ++ +DQ G E+AEE E P NP + + + +S I+ SQG NPF K PN + + V D M+ K+ T + A KQ+ V+K +P K QAL+ P +GFQ+WL ENR + + D+ + A IK G+ ++ L E++ Sbjct: 3 STQKPMRYGHTEGHTDVCFDDTGSCIVTCGSDGDVRIWENLDDDDPKSITVGEKAYSCALKNGKLITAVSN-NTVQIHTFPEGAPDGILTRFTMNANHVIFNSDGTKIAAGSSDFMVKVVEVTDSSKQKTFRGHDAPVLSLSFDPRDV---YLASASCDGSVRVWKIADQTCTTSWPLLQKCNDVISAKSICRLGWQPGSGKLLAIPVDKVVKLY-RRGTWD---SQLDLSHKSITQSLNVVAWSPCGQYLAAASVDGNILVWNVETQECIERMQHEKNYTICGLAWHPKHKQIAYADTEGSLGLLENIGDGKKPNDKVAGAKTKDYNDLFDGEDDNCSNGDMIEPQSSPKAGANEDNDDLIPTLGLLRRAIIDDDNSLDIGMIKANSSLLEKEDD---------DDQAGGFS---ALPSSTQRPFYDGPMPTPQ---QKPFQSGSTPAHLAHRFMVWNSVGIIRCYNDEQDNAIDVEFHDTSIHHATHLPNSLNHTMADLSTEAILLACESTEE--LASKLHCIHFSSWDTNKEWTVDMPEDEDIEAVCLGQGWAACATSALLVRVFTVGGVQKEIFSLPGPVVSMAGHGEQLMVIYHRGTGFDGDQCLGVQLMELGKKKEQILHGD--PLSLTKKSYLTWVGFSAEGTPCYVDSEGIVRMLNRGVGNTWIPVCNTREHCKGRSDHYWVVGIHENPQQLRCIPCKGARFPPTLPRPAVAILPFKLPYCQVMTEKGQMEEQYWRSVVFLNHVDYLLKNGYEIDENAKSQSVKEQQELLMKLFALSCKLEREFRCVELADLMTQNVVNLAIKYASRSRKLNLAQRLNEMAAEKVSELATAPEDEEDFRKHLNAGYRSSATEWSQLPVRNVQQDQEMEDAGETGAYEEAEETPEVQEQRP-NPFSKGVTSAEV--TTPKSAVIVSSSQGRV--NPF--KVSPNRKDPVVPSAN-VLDTMS---------------KYPKKTSLSSSRAVNKQNPPVIKPLIP-KPKSKQALAASFFQARTPTSSEKTVEEREEKTGNESHQVKVTAQQNTENGRPKTGFQMWLEENRANI--LTDNPDLNEAEVIKEGMSRFRILSSEER 1047 The following BLAST results are available for this feature:
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 4
BLAST of wd repeat and hmg-box dna-binding protein 1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of wd repeat and hmg-box dna-binding protein 1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1959_size23944:11939..17030+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1959_size23944-snap-gene-0.6 ID=maker-scaffold1959_size23944-snap-gene-0.6|Name=wd repeat and hmg-box dna-binding protein 1|organism=Tigriopus kingsejongensis|type=gene|length=5092bp|location=Sequence derived from alignment at scaffold1959_size23944:11939..17030+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'wd repeat and hmg-box dna-binding protein 1' has the following synonyms
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