TGF-alpha, maker-scaffold22_size673200-snap-gene-4.19 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of TGF-alpha vs. L. salmonis genes
Match: EMLSAG00000012242 (supercontig:LSalAtl2s:LSalAtl2s891:23413:24135:1 gene:EMLSAG00000012242 transcript:EMLSAT00000012242 description:"augustus_masked-LSalAtl2s891-processed-gene-0.0") HSP 1 Score: 168.703 bits (426), Expect = 1.606e-50 Identity = 83/160 (51.88%), Postives = 109/160 (68.12%), Query Frame = 0
Query: 150 RSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNSKVGQVLILGIAVIVTVVIISAIATKIRTRIKLRTIATATVNQLRQNQFSSIGMGDNVLPAGDIMGQSISYQLSS 309
R TP P +A+RP+IT QTYACPPAYAAWYCLNGATCF VKIA+SILYNCECADGYMGQRCEFKD DG+Y+PAR++L ++K+ G + + +++ I+ A+ TK RT+ KL QLR+ + I + + +I QSIS+ +SS
Sbjct: 59 RXTPXXXSPIXSAIRPDITXQTYACPPAYAAWYCLNGATCFAVKIAESILYNCECADGYMGQRCEFKDPDGSYLPARKKLYLLKSPGFGLIFLTAFGLVILAAILGALYTKHRTKSKL--------TQLRK-EVEVISISSKC--STNIQRQSISFDISS 207
BLAST of TGF-alpha vs. L. salmonis genes
Match: EMLSAG00000000722 (supercontig:LSalAtl2s:LSalAtl2s1113:94882:99208:1 gene:EMLSAG00000000722 transcript:EMLSAT00000000722 description:"maker-LSalAtl2s1113-augustus-gene-0.12") HSP 1 Score: 113.235 bits (282), Expect = 6.560e-31 Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0
Query: 141 PHCAESCSSRSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCE 203
P +++CSSRSTPKPR P +AMRPNITF+TYACPPAYAAWYCLNGATCFT+KIA+SILYNCE
Sbjct: 50 PVGSDACSSRSTPKPRLPVHSAMRPNITFETYACPPAYAAWYCLNGATCFTLKIAESILYNCE 112
BLAST of TGF-alpha vs. SwissProt
Match: gi|50403762|sp|Q01083.2|SPITZ_DROME (RecName: Full=Protein spitz; Flags: Precursor) HSP 1 Score: 114.775 bits (286), Expect = 1.208e-28 Identity = 71/188 (37.77%), Postives = 96/188 (51.06%), Query Frame = 0
Query: 127 QYSMLVLVCL-CLCLPHCAESCSSRSTPKPR------------PPSQ--------------NAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNSKVGQVLILGIAVIVTVVIISAIATKIRTRIKLRTIATATVNQLRQNQFSSIG 287
Q+ ++ LV + CL P E+CSSR+ PKPR PP+Q RPNITF TY CP + AWYCLN A CF VKIAD +Y+CECA G+MGQRCE+K++D TY+P R R M+ K S + G + ++ +A +R + A +L+Q G
Sbjct: 8 QHGLVALVLIGCLAHPWHVEACSSRTVPKPRSSISSSMSGTALPPTQAPVTSSTTMRTTTTTTPRPNITFPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTYLPKRPRPMLEKAS-----IASGAMCALVFMLFVCLAFYLRFEQRAAKKAYELEQELQQEYDDDDG 190
BLAST of TGF-alpha vs. nr
Match: gi|1325277978|ref|XP_023323627.1| (uncharacterized protein LOC111697754 [Eurytemora affinis]) HSP 1 Score: 201.83 bits (512), Expect = 4.145e-58 Identity = 103/182 (56.59%), Postives = 126/182 (69.23%), Query Frame = 0
Query: 120 AAARLFSQYSMLVLVCLCLCLPHCAESCSSRSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNS--KVGQVLILGIAVIVTVVIISAIA-TKIRTRIKLRTIATATVNQLRQNQFSSIGMGDNVLPAGDI 298
A +LFSQ ++L+L + L ++CSSRSTPKPRPPS MRPNITFQTYACPPAYAAWYCLNGATCFTVKI SILYNCECADG+MGQRCEFKDLDG+Y+P RERL M S +G+ +IV VI++A+ TK RTR KL+ I +L ++++S GD + D
Sbjct: 10 APEKLFSQRNVLLLSFFLVILASNTDACSSRSTPKPRPPSPT-MRPNITFQTYACPPAYAAWYCLNGATCFTVKIGISILYNCECADGFMGQRCEFKDLDGSYLPTRERLKMAVTSVRAAASSAPIGLVIIVVFVILAAVVFTKRRTRAKLKRI------ELERSEYSE--EGDTSFESTDF 182
BLAST of TGF-alpha vs. nr
Match: gi|675381388|gb|KFM74290.1| (Protein spitz, partial [Stegodyphus mimosarum]) HSP 1 Score: 175.252 bits (443), Expect = 1.060e-49 Identity = 85/123 (69.11%), Postives = 97/123 (78.86%), Query Frame = 0
Query: 144 AESCSSRSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNSKVGQVLILGIAVIVTVVIISAIATKIRTRIK 266
AESCSSRSTPKPRP S MRPNITFQTYACP AYA WYCLNGATCF VKI DSILYNCECADGYMGQRCEFKDLDG+Y+P+RER+M+ + S G V I + ++ + +I I T+ R R K
Sbjct: 19 AESCSSRSTPKPRPTSAT-MRPNITFQTYACPEAYAKWYCLNGATCFAVKIRDSILYNCECADGYMGQRCEFKDLDGSYLPSRERVMIERASIAGGVTI-AVLLVALISLIFYIHTRRRWREK 139
BLAST of TGF-alpha vs. nr
Match: gi|297499581|gb|ADI43984.1| (TGF-alpha, partial [Gryllus bimaculatus]) HSP 1 Score: 169.474 bits (428), Expect = 1.127e-47 Identity = 85/148 (57.43%), Postives = 104/148 (70.27%), Query Frame = 0
Query: 145 ESCSSRSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNSKVGQVLILGIAVIVTVVIISAIATKIRTRIKLR----TIATATVNQLRQNQFSSIGM 288
E+CSSRSTPKPRPPS A RPNITF TYACPPA+A WYCLNGATCFTV I +S+LYNCECADGYMGQRCEFKDLDG+Y+P+R+R+M+ S G G + V +V++ IA I + KL+ T + + L + FS M
Sbjct: 1 EACSSRSTPKPRPPSPTA-RPNITFHTYACPPAHATWYCLNGATCFTVNIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRQRVMLETASIAG-----GATIAVFLVVLVCIAVYIHFQRKLKESRATCVDGSSHDLEKRPFSRDPM 142
BLAST of TGF-alpha vs. nr
Match: gi|241123900|ref|XP_002404020.1| (protein spitz, putative [Ixodes scapularis] >gi|215493567|gb|EEC03208.1| protein spitz, putative, partial [Ixodes scapularis]) HSP 1 Score: 165.236 bits (417), Expect = 3.007e-46 Identity = 74/111 (66.67%), Postives = 88/111 (79.28%), Query Frame = 0
Query: 144 AESCSSRSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNSKVGQVLILGIAVIVTVVII 254
A+ CSSRSTPKPR P Q+ +RPNITFQTY CP AYA WYCLNGATCF +KI +SILYNCECADGYMGQRCEFKDLDGTY+P R+R+++ K G V + + V + VV +
Sbjct: 47 ADGCSSRSTPKPRAP-QSTVRPNITFQTYTCPEAYAKWYCLNGATCFAIKIGESILYNCECADGYMGQRCEFKDLDGTYLPTRQRVLIEKAGLAGGVTLAVLLVFLIVVFV 156
BLAST of TGF-alpha vs. nr
Match: gi|1067100329|ref|XP_018012256.1| (PREDICTED: uncharacterized protein LOC108669440 [Hyalella azteca]) HSP 1 Score: 174.096 bits (440), Expect = 4.246e-46 Identity = 82/132 (62.12%), Postives = 100/132 (75.76%), Query Frame = 0
Query: 131 LVLVCLCLCLPHCAESCSSRSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNSKVGQVLILGIAVIVTVVIISAIATKIR 262
LV + LP+ AE CSSRSTP+PRP S +RPNITFQTYACPPAYAAWYCLNGATCFTVKIA+SILYNCECADGYMGQRCE+KDLDG+Y+P +++++ S G + + ++V I SA A K +
Sbjct: 341 FFLVLIAASLPNLAEGCSSRSTPRPRPLSP-TLRPNITFQTYACPPAYAAWYCLNGATCFTVKIAESILYNCECADGYMGQRCEYKDLDGSYLPTGDKVLLETASIAGGAAL--VIILVFFGIFSAFALKNK 469
BLAST of TGF-alpha vs. nr
Match: gi|1238828776|ref|XP_022235915.1| (protein spitz-like [Limulus polyphemus]) HSP 1 Score: 166.007 bits (419), Expect = 6.234e-45 Identity = 84/156 (53.85%), Postives = 105/156 (67.31%), Query Frame = 0
Query: 126 SQYSMLVLVCLCLCLPHCAESCSSRSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNSKVGQVLILGI-AVIVTVVIISAIATKIRTRIKLRTIATATVNQLRQ 280
S +S+L +V + + AE+CSSRSTPKPR P RPNITFQTY CP AYA WYCLNGATCF+VKI +SILYNCECADGYMGQRCEFKDLDG+Y +ER ++ K + + L I AVI VV + + R +++ RT+ + L Q
Sbjct: 86 SLHSLLTVVVVASLVFRIAEACSSRSTPKPRAPLPTTSRPNITFQTYTCPEAYAKWYCLNGATCFSVKIGESILYNCECADGYMGQRCEFKDLDGSY-SIKEREIIRKTASIAGSLGFAITAVITCVVFFICLRRQKRKKVEKRTLRALIIPVLHQ 240
BLAST of TGF-alpha vs. nr
Match: gi|1228009238|ref|XP_021936532.1| (pro-epidermal growth factor-like isoform X2 [Zootermopsis nevadensis]) HSP 1 Score: 164.466 bits (415), Expect = 2.614e-44 Identity = 95/200 (47.50%), Postives = 121/200 (60.50%), Query Frame = 0
Query: 78 RHTSSSDEELGPASS-SPTPLTARSLVISLGASRSEAGSRPASAAARLFSQYSMLVLVCLCLCLPHCAESCSSRSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNSKVGQVLILGIAVIVTVVIISAIATKIRTRIKLRTIATATVN 276
RH S +G S+ P P AR+ SR A + P A R+ + VLV + A++CSSRSTPKPRPP A RPNITF T+ CPPAY WYCLNGATCFTVKIADS+LYNCECA+G++GQRCEFKDLDG+YMP+++R M S G G + V +V+I +A I + K + + V+
Sbjct: 44 RHLSDFPTGVGGVSACYPAPAEART-------SR-RATASPGGAHCRMPPPLATFVLVVSTVL--SIADACSSRSTPKPRPPVPTA-RPNITFHTFPCPPAYNTWYCLNGATCFTVKIADSLLYNCECAEGFIGQRCEFKDLDGSYMPSKQRKMFQTASIAG-----GATIAVFLVVIVCVAVYIHLQRKQKETRASCVD 227
BLAST of TGF-alpha vs. nr
Match: gi|646699974|gb|KDR10340.1| (hypothetical protein L798_15402, partial [Zootermopsis nevadensis]) HSP 1 Score: 159.458 bits (402), Expect = 2.820e-44 Identity = 76/125 (60.80%), Postives = 93/125 (74.40%), Query Frame = 0
Query: 144 AESCSSRSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNSKVGQVLILGIAVIVTVVIISAIATKIRTRIKLR 268
A++CSSRSTPKPRPP A RPNITF T+ CPPAY WYCLNGATCFTVKIADS+LYNCECA+G++GQRCEFKDLDG+YMP+++R M S G G + V +V+I +A I + K +
Sbjct: 1 ADACSSRSTPKPRPPVPTA-RPNITFHTFPCPPAYNTWYCLNGATCFTVKIADSLLYNCECAEGFIGQRCEFKDLDGSYMPSKQRKMFQTASIAG-----GATIAVFLVVIVCVAVYIHLQRKQK 119
BLAST of TGF-alpha vs. nr
Match: gi|1316144144|ref|XP_023217084.1| (protein spitz-like [Centruroides sculpturatus]) HSP 1 Score: 162.925 bits (411), Expect = 3.181e-44 Identity = 88/143 (61.54%), Postives = 98/143 (68.53%), Query Frame = 0
Query: 146 SCSSRSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNSKVGQVLILGIAVIVTVVIISAIATKIRTRIKLRTIATATVNQ--LRQNQFSSI 286
+CSSRSTPKPR PS MRPNITFQTYACP AYA WYCLNGATCF VKI DSILYNCECADGYMGQRCEFKDLDG+Y+PARER+M+ K S I + V V + I I + RIK T T + L QN +
Sbjct: 80 ACSSRSTPKPRAPSPT-MRPNITFQTYACPEAYAKWYCLNGATCFAVKIRDSILYNCECADGYMGQRCEFKDLDGSYLPARERVMIEKASIASGAAIAILLVFV-ISIAFYIYVRRWGRIKRLTPVVITHRKYFLTQNTLRDV 220
BLAST of TGF-alpha vs. nr
Match: gi|1339058980|ref|XP_023718030.1| (probetacellulin-like isoform X2 [Cryptotermes secundus] >gi|1339058982|ref|XP_023718031.1| probetacellulin-like isoform X2 [Cryptotermes secundus]) HSP 1 Score: 163.696 bits (413), Expect = 4.324e-44 Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = 0
Query: 144 AESCSSRSTPKPRPPSQNAMRPNITFQTYACPPAYAAWYCLNGATCFTVKIADSILYNCECADGYMGQRCEFKDLDGTYMPARERLMMIKNSKVGQVLILGIAVIVTVVIISAIATKIRTRIKLRTIATATVNQLRQN 281
AE+CSSRSTPKPRPP A RPNITF T+ CPPAY WYCLNGATCFTVKIADS+LYNCECA+G++GQRCEFKDLDG+YMP+++R M S G G + V +V+I +A I + K + + V+ Q+
Sbjct: 101 AEACSSRSTPKPRPPVPTA-RPNITFHTFPCPPAYNTWYCLNGATCFTVKIADSLLYNCECAEGFIGQRCEFKDLDGSYMPSKQRNMFQTASIAG-----GATIAVFLVVIVCVAVYIHLQRKQKETRASCVDGNSQD 232 The following BLAST results are available for this feature:
BLAST of TGF-alpha vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of TGF-alpha vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 1
BLAST of TGF-alpha vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold22_size673200:395620..405313+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold22_size673200-snap-gene-4.19 ID=maker-scaffold22_size673200-snap-gene-4.19|Name=TGF-alpha|organism=Tigriopus kingsejongensis|type=gene|length=9694bp|location=Sequence derived from alignment at scaffold22_size673200:395620..405313+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'TGF-alpha' has the following synonyms
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