carbamoyl phosphate synthase large subunit, maker-scaffold292_size219010-snap-gene-1.39 (gene) Tigriopus kingsejongensis

Overview
Namecarbamoyl phosphate synthase large subunit
Unique Namemaker-scaffold292_size219010-snap-gene-1.39
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of carbamoyl phosphate synthase large subunit vs. nr
Match: gi|1325326302|ref|XP_023344998.1| (transmembrane protein 223-like isoform X1 [Eurytemora affinis] >gi|1325326304|ref|XP_023345000.1| transmembrane protein 223-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 133.65 bits (335), Expect = 8.876e-36
Identity = 74/214 (34.58%), Postives = 119/214 (55.61%), Query Frame = 0 
Query:   12 WVGGTTGLSRLWLRRNYEYAYKPKEKNRLRENLEVLARKDLTLFYFENPKRMTLFTGMAALMTPMWLYLGYFTYTLPTQLDPYRDRLSNENRKPAWVLNNIDKASRGVALGFSLFGLILSAYWLSRSRHT----------------------------------CGAVHQNYQGKQRTYIRVKDYYFKFQLNVENGTFVNRPLFDRTVGIARRV 191
            W   T  L  L L+++    +KPK+K    + +E +  KD+TLF +E+ K++ L   +   M P+W YLGYF +TL ++L+P+R+ ++N N +  ++L+N+ KAS GV  GF LFG  L++YW+ R+ +T                                  C  +   + GK R +++V+D+ FK+  N+E+G F NRPLFDRTVGI+R +
Sbjct:    3 WNCVTKPLFGLTLKQSVRRYFKPKQKEAFFD-VEGVVNKDITLFRYEDLKKVRLKNMLGMSMLPLWAYLGYFAFTLRSKLEPFREEVNN-NVRYNFLLDNVTKASVGVGAGFFLFGAGLTSYWMLRTMNTVRKLVLRKGGKYVGIQTYGLLGKNDGFMNVPVVHCSGIQHKFYGKHRFFLKVRDHSFKYSFNLEDGIFSNRPLFDRTVGISRTI 214
The following BLAST results are available for this feature:
BLAST of carbamoyl phosphate synthase large subunit vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of carbamoyl phosphate synthase large subunit vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of carbamoyl phosphate synthase large subunit vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325326302|ref|XP_023344998.1|8.876e-3634.58transmembrane protein 223-like isoform X1 [Eurytem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold292_size219010supercontigscaffold292_size219010:124935..127192 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold292_size219010-snap-gene-1.39-mRNA-1maker-scaffold292_size219010-snap-gene-1.39-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold292_size219010:124935..127192-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold292_size219010-snap-gene-1.39 ID=maker-scaffold292_size219010-snap-gene-1.39|Name=carbamoyl phosphate synthase large subunit|organism=Tigriopus kingsejongensis|type=gene|length=2258bp|location=Sequence derived from alignment at scaffold292_size219010:124935..127192- (Tigriopus kingsejongensis)
CGTGCTCCTGCCGGCTATCTCACCTGCCGAAAGCATGTCTGATCTAGCCC
TGGATCCAATCTTTACTCTAGTGTTCCATATAGAGTGAATCTAAACATGA
GTGCCACTCGCTAGACCTTCAATCATGATATTCCGACTGGCCTTCAACCC
ATCGCAATGGGTTGGGGGGACAACGGGTCTGAGTCGTCTGTGGCTCCGCC
GCAACTATGAGTACGCCTACAAGCCCAAGGAGAAGAACCGCTTGCGCGAG
AACCTCGAAGTGTTGGCCCGCAAAGACCTCACCCTCTTCTACTTCGAGAA
CCCCAAACGTATGACCCTATTCACGGGCATGGCCGCTCTCATGACTCCCA
TGTGGCTCTACTTGGGCTACTTCACCTACACTCTGCCCACCCAACTCGAT
CCCTATCGGGATCGCCTATCCAATGAGAACCGCAAACCCGCCTGGGTCCT
CAATAACATCGACAAGGCCAGTCGGGGCGTGGCCTTGGGATTCTCGCTCT
TCGGTAAATGTTCCAGCCTTAAGTTTCAACTGACTTCCCTCTAAATGTCC
TCGAAAGTAGCCTGAAATCGGCGACAGTGTCCAGAAGGCTCGTCCCACCA
GAGACGGCATAATCTTGCCTTGATAGGCGTCCAATTTGGTCCTAGAGCAC
CATGGGCACCATTTATGCATGGATCCAATCTGAGTCTAAAAGCCACATTT
TCCGTACAAATTTCGTTTTCGATTGCATACATTCGGAATCAGATTTGAAA
CATTCAAACCACGTACCTATCGTCAGGTTAAATTTAACGTCAGGCTAAAT
TTTGACATCCTTACGGAAATGGAGATATGACATTGGCCAATATTCAACCA
AAGTAGAACCTGCCAATTTTGTAACATTTAATATTTTGAAAATCTTTTAA
AAATAAGAAATCAGCTTAGGGCAGAACGAATGGCGGTTTTCTTTACCACA
CATATTGTTCGGTAAAAGCAATAAAGTCATCGCCCCAAAAAAATTAAAAA
CGTTCACGCAGTAATGCTATTTTCAAACTTTGGGTAGTCATTTACCGGAG
ATCATGTTAGCACCTGAAGCGATAGAAGTAGTCATTATAAGGGGGGAAAG
CAAACAGGAAGGGTAACGACTTGAACATGCAACTTCAATCAGACATGTCA
TTTATGTAATGTACAGTAGATAATACCTGCTGATTGATAACTTAAAATAC
AGGTAAGGAATTGTGTCGCTTTTTCCCTTGAATTTTGCCCTTTTTTCCTG
GGTCGATCAAAAGCCGATTAGAAGTTACACTGTCGACTACTATCGACCTG
GGGGTGACTAACAGCAATGTTTCTACTATTTCAGGGCTGATCCTTAGTGC
GTATTGGTTGAGTCGTTCAAGACATACAGTTCGTAGGCTTATCTTGCGAA
AAGGTGGGAAACATTTGACCATGGTGACTTATGGGTTCTCCGGAATGGGC
TCAAAGTCAACGACTGTACCAGTCAATCAAGTAAGCTTCACACACACAAT
CATTGCTATAAACGTAATTGTAACTAGAGATAGACTTCATCATGTCACTC
AGATCAGTATGGGTCCTGAAAGTTCGTATGGCCCATGCCAATTTGGTAAA
AGAGTTGCACCCTCTAGTTTTGCCTTTATTTTGAATTCAAGATCTCAAAT
CGAGGGTGGATGTTTTGCCTACGCACCCTGTAGTTGCAAACCACGGTAAC
TTTGCCAATAAGGAAATAAAATAGTAGGACTTTTAGCATTGACACAAGAA
TTGCCCGGAAACGTTAAGGCCCACCTGTAATTGCAAGCTCTCGTGACCTT
TTCTCGATTGCTAATCGATCCTCGTCTCAATGGCATCAGCTTTGAAAAGA
CATTCTCGCGACTCCTGGTCAGGAAGTCCTCTTTCAGAACCCCCTGAAGG
GCCCATTTTTTTCTTGCGACGATCAAAATATTTTGGCTCAAATGCACTTT
GATGTCTGATGGCGCCAGCGGAGGATTGGAGCATTGTATGCTAATGAACG
TTTCACAAGGTGCTTATCTATTTTTAGTGTGGTGCTGTCCATCAAAACTA
TCAAGGCAAACAAAGGACGTACATCCGTGTGAAGGATTACTACTTCAAGT
TCCAGCTCAACGTGGAAAATGGCACATTTGTGAACCGACCGCTCTTCGAT
CGAACCGTGGGGATAGCCCGAAGGGTCTAATTGTCTTGATGCCGATGATG
TTAATGTGTCCTCCCGTTCATGCAGCAGTTTTCTAATGAAATTCCTAAAT
ATAAAAAC
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Synonyms
The feature 'carbamoyl phosphate synthase large subunit' has the following synonyms
Synonym
Tk00328
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