adenomatous polyposis coli, maker-scaffold338_size202645-snap-gene-1.14 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of adenomatous polyposis coli vs. L. salmonis genes
Match: EMLSAG00000009061 (supercontig:LSalAtl2s:LSalAtl2s568:163360:180719:-1 gene:EMLSAG00000009061 transcript:EMLSAT00000009061 description:"maker-LSalAtl2s568-augustus-gene-1.59") HSP 1 Score: 97.4413 bits (241), Expect = 2.860e-22 Identity = 103/279 (36.92%), Postives = 142/279 (50.90%), Query Frame = 0 Query: 95 SHLPRPQALGRSESSGSSTKSCRTDNASPEPDKLSKSGESDDDEELMACVINIGMPKSKSEPLDLKD--KVVKRE--KKASSKHNRRSTSKSPRNSKVIPGVRIAELKLKPRST--SQEKESLTLPLTKNEPPTEGDQAETPVSSARMSQIWSDESPNCAPPPTLEAMAETLLASAAQDLSNEDVLQMEAER-------VSQCVQEEASMISSVCSTLSAIQPPSLMLESLMSISGEKDRSEAQSIQKINSKSPVKKSSPTKLECRHTISAKKGFAVPE 360 S LPRP+ LGRSESSGSS KS + + E + S + + DE L+ +I GMPKSKSEPL K+ K E K K R SKSPR SK+IPGVRIAEL+L P+ + S E +S ++ K+EP R+ + E P + + +DL +D+ ++E VS ++ S+ SS+CS +S IQPPS+M + L+S+S K+ V K+ECRHT+SAKKG+ VPE Sbjct: 1689 SLLPRPRVLGRSESSGSSQKS---NFPNRETSMSNDSLQDESDEALLEDIIKSGMPKSKSEPLGFNQGLKLAKTEFGVKKRDKKKGRDNSKSPRASKIIPGVRIAELRLLPKKSPISPEIKSTSIIEPKDEP--------------RVFDLQCGEKP-------------LIFSENKKDLEIQDI-EIEPSTKVDIKGAVSVLTEDCLSLESSLCSNISMIQPPSIM-DXLISMS--------------ERKTDVLLPHTAKMECRHTLSAKKGYTVPE 1921
BLAST of adenomatous polyposis coli vs. nr
Match: gi|1325301328|ref|XP_023332205.1| (adenomatous polyposis coli protein-like [Eurytemora affinis]) HSP 1 Score: 151.369 bits (381), Expect = 1.623e-36 Identity = 141/387 (36.43%), Postives = 187/387 (48.32%), Query Frame = 0 Query: 30 GRETPVHFATEGTPHVFSRCDSLSSLSCTEEQDDKECGTEGESVEKADLTLSSKRSTPSSAGVFRSHLPRPQALGRSESSGSSTKSCRTDNASPEPDKLSK-----------------SGESDDDEELMACVINIGMPKSKSEPLDLKDKVV-----KREKKASS-KHNRRSTSKSPRNSKVIPGVRIAELKLKPRS------TSQEKESLTL--------------PLTKNEPPTEG---DQAETPVSSARMS---QIWSDESPNCAPPPTLEAMAETLLASAAQDLS--NEDVLQMEAERV------SQCVQEEASMISSVCSTLSAIQPPSLMLESLMSISGEKDRSEAQSIQKINSKSPVKKSSPTKLECRHTISAKKGFAVP 359 G ETP+H+ATE TP VFSR DSLSSL ++ K S +D T S ++ +S F+SHLPRP +GRS SSGSST P+ K SK + +DD+E L+A I+ GMPKSKSE DL K +REK AS+ + RR SKSPR S++IPGV I ELKLKPR+ S E E+ L P + EP + + E+P+ + M ++ + + +E M TL S D+ N ++ EA V S+ SM S TLS +QPPSLMLESL S+S N + +++S KLECRHT+S K G +VP Sbjct: 1267 GGETPLHYATEDTPAVFSRNDSLSSLEYEDQNLQKGPPPSQPSKGGSDGTSSWGVASSTS---FQSHLPRPLTVGRSASSGSST-------GVPDKPKDSKPNKSFNSSLSSLSIDSLNNTNDDEENLLADCISSGMPKSKSEHFDLSGKFRAKKSPRREKSASAEREKRRPASKSPRGSRLIPGVVIPELKLKPRTPPKSRPQSGEMENFNLKSRSASPNLESEIKPDQRTEPEKQKAKESKPESPIVNFNMEDEPEVLHHSPIHESASNQVEEMTLTLTQSRISDMEGFNSSLISREAGVVAASFDLSEYPSLTGSMYSEGGETLSMVQPPSLMLESLPSLS-----------MPFNPPTVTRRTSDVKLECRHTLSGKLGSSVP 1632 The following BLAST results are available for this feature:
BLAST of adenomatous polyposis coli vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of adenomatous polyposis coli vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of adenomatous polyposis coli vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold338_size202645:86389..87747+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold338_size202645-snap-gene-1.14 ID=maker-scaffold338_size202645-snap-gene-1.14|Name=adenomatous polyposis coli|organism=Tigriopus kingsejongensis|type=gene|length=1359bp|location=Sequence derived from alignment at scaffold338_size202645:86389..87747+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'adenomatous polyposis coli' has the following synonyms
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