|
|
Associated RNAi Experiments
Homology
BLAST of hypothetical protein CAPTEDRAFT_205745 vs. L. salmonis genes
Match: EMLSAG00000007467 (supercontig:LSalAtl2s:LSalAtl2s427:427704:446136:-1 gene:EMLSAG00000007467 transcript:EMLSAT00000007467 description:"maker-LSalAtl2s427-snap-gene-3.18") HSP 1 Score: 71.633 bits (174), Expect = 1.278e-17 Identity = 47/119 (39.50%), Postives = 62/119 (52.10%), Query Frame = 0
Query: 1 MRHIAILG---FVAIVVSLGSADGLRCYTCISGLGRDCNDLANAEETECVAGELHCTKIVLGEDVTRACFTG-RKSQQVGCQENGNTINCICDGDLCNGA---NGLKSASMILSIPLAV 112
MR A+LG F+ +++G A L CYTC ++C+D E C GE C KIVL + VTR+C+ K +Q C+E G C C GDLCNG+ G SM LS L +
Sbjct: 1 MRSSALLGILFFITCYLTVGQA--LDCYTCFPDESKNCSDPNVGEIKTCQEGEELCLKIVLDKRVTRSCYLDIPKRKQESCREKGPVAECYCSGDLCNGSFQVQGEVIGSMCLSFILLI 117
BLAST of hypothetical protein CAPTEDRAFT_205745 vs. nr
Match: gi|961376154|gb|ALS04821.1| (hypothetical protein [Pseudodiaptomus poplesia]) HSP 1 Score: 53.9138 bits (128), Expect = 7.368e-7 Identity = 34/116 (29.31%), Postives = 61/116 (52.59%), Query Frame = 0
Query: 5 AILGFVAIVVSLGSADGLRCYTCISGLGRDCNDLANAEET--ECVAGELHCTKIVLGEDVTRACFTGRKSQQVGCQENGNTINCICDGDLCNGANGLKSASMILSIPLAVLLSVLL 118
A++ F + G + GL CY+C+ G C D A EE+ +C HC +I++ ++ C ++ GC E +T+ C C GDLCN A+ + S+ L+ +A ++ +++
Sbjct: 6 AVILFTLVAALAGVSVGLECYSCLDG----CEDSAGQEESVDQCGPKVQHCYRIIVDGKLSLGCALDPPARD-GCSEGRDTVTCYCKGDLCNSASS-TATSLGLAFAIASVIKLVV 115
The following BLAST results are available for this feature:
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold339_size202159 | supercontig | scaffold339_size202159:58748..63816 + |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Note | F:chitin binding |
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold339_size202159:58748..63816+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >maker-scaffold339_size202159-snap-gene-1.18 ID=maker-scaffold339_size202159-snap-gene-1.18|Name=hypothetical protein CAPTEDRAFT_205745|organism=Tigriopus kingsejongensis|type=gene|length=5069bp|location=Sequence derived from alignment at scaffold339_size202159:58748..63816+ (Tigriopus kingsejongensis)
GCAGGACCTTCTAGCTTCAGCACCAGCGTCCGTTTTCGGCCCCAAATCCA
AGCCAAAAATCCCTCCCCGCGCTTGCTTTTTGCGATTCCGCCCCAAAGAA
GTGAGGAGAATCTTCAGTTGTGATTTTTTTCTCGTGTGCGAAGATTGAGT
GGGTTGATTAGCTCGTTTTAGGTTTTGTTGAGGTGCGTCCACTTCGAACA
AGTATAGGGTTCAGCCAGTGAATACCATTGGAAATTTCATCCTCTTCACC
ATGAGACACATCGCCATCTTAGGATTTGTTGCCATTGTGGTTTCGCTGGG
TTCGGGTAAGCAATAGACTGGTTCCTTCATGTTCATGGTTATTATGCTCA
CAAGCAGTCTCATAAAGGTCGCCGTGACCACTAATGACGTTGTTTACCAG
CGAAAAGGACACAAATTGCATTCTCCAACCCAAGCATTGGCTGCATTCTT
CGATTGATCGACAAAGATGCAGATAATTGTTCATGATTGGTTGATGCTTG
GGAGGCAAACACAGTTTCATTCGCATCACAACCGCTTTGAAGGCGTTCAG
TTGTGACCAAGGAACAACACAATTTTCGAAATCTTGGGAAATTAAAAACC
CGTGTCCCAAGGCAATTACCAACCATGCTGTTTCAGAATTATTAATGATA
AAAATAAATTAAAAAAAGTATCGAGCCATTTGCATTCATGGCCCAAGAAT
GGCAACCAACGTGGCTGAATCTTATGGTCACAATCGTTTAGACGTGACAA
TACTCCACGAACAGGTTTAATTTAATGCCTCTTGGCCAAATTTTATATGG
TGACACCTTGGACTTCTGACTTGGGTTGCATTCATGAGAACACTTCAGAA
GAAATCATGTCGCTTATGATGAAGAATTATACTTACCCACCGTACCAAAA
TTAACTTATGCTATTTGGGAAATACCTTGGTTGAGCCATTACAGATCTTG
GGTTGGCATGCCGTCTACAGTAAAGCCAATGGTTTTGAGCTGACACTTGG
GTAGATAATTCATAAGATCATAAAAAATCAGTTGTACTAGGATGTTTTGA
TCTGCAAGTGTTATTTACTCAAGCCACAAAGCAAGTATTTTCGTTCTGGA
AATGGTTTTTAAAGTTAGTAAATTTTGCCGCTTTTCTATAAAACGTTTGC
CCTCAAAAACATTGGTGGTTTATACCAATTCACAAGGCCAATAACCATGA
TCATTGGCTATATTTAAAAATCATGAACACGTTGTTAATATGAAAGCCCA
TTTTTGTTATTATCTATTAACACATATTAGCATGCCTTAAAAACAAGCTG
CGAACAGTAAGTTTCGAAGCCAAGAAATGCTGAAGATAGTCGAATACAAA
CTGAGTTGCCGGCAAATGTACTTAAAACACATTTAGTGATGTTAAATCAG
AATATCGTGCTCGTCCTAGTCTCGAGTGATCTGTGACTTTGGGTGCGCCA
TCCACAATTTTCAGTGGTTTCCTTTGGCCAAAGACCAGATATGCGATGAT
CCTCTGGCAAAAAATATTGGGCTGTGAAGAAGTTAGCAGAGTGGCATTTG
CATGCACTTTTGAGAATCCATTTTTTTGGAGCGATCGCACACATTCTTCA
TGAAAATGGCGTCAAGTGTTCAGCGTGACACCCCTAAAATGGCCCCAGAA
AATGATCATCACCATCATCATTTTCTTCACATCCTGATGAGCTTGGAAAC
ACATCCCTCCATCTACAGATGTACTAGAATGTGCAGTTTCTGCCGAGCGA
ACGTACTTTTCCCAAAAATCCGCCCCTTGCAAATCATGCATGAATTCTGG
GAATGAGTTTCCAATTCAGTGGCTGGGGATTGGCTTTTTCTGGCATACCC
ACACATGTAGCATGTCGTCACATATGAGGCATGGGGTCTCGCGTGTACGG
TATATTCACTTAAAATTGTGCATAATTAAAATGGCGATGTCCCGCCATGA
GTTAGATGACTTTGAAGGAGATGTTGTACTGGAAATTCCTGGCTATTATT
CATTTTTCTTAATAGCCGCAGTTCAAGGACTCGGCTCACAAAAACCTCTC
CAGCTAAGATTTTTCTGAACTCCATTGAATGAGAGGCATTCATAAATTTC
GAGAGGACTTGTCTTGTCCATCAACTGTCCACGGAATACTCATCTTTTCC
AACCCCTAACGAGAAAACTAATTAAAATAATCCTGAATGGGGAGATGCAT
TCATGTGGATGTGGACAAGTGGGTGCGTCGAGATGAACTAAGTAAATGCA
TGCACTTATGGCCGATAAGGTCACGAATTAAAGGGATACCAAAGCTCTAG
AGCACCTGAACTGGTTTGACTAATGCATGGACTACTTCATGACTAATGTT
AAAGGACACTCAGAATGTCAAGTATTGTTTCCGCCTTTCCTGATCTTGAA
CAGGAACTCAAGCATAAAAGGTGTCCAGAGGGTAGAACAATGGGACCTTT
CACCCCAAGCCTCCGGATACTCTTTTCAAGGCGGAGGTGGGGAAAAAAGC
TTTTTCCACAGTTCTAGAATTGGTCTAATTAAGTCTTCAATATTTGGGCT
ATCCTTTGGTTTAGCAATGGGGCAAAACCGTAGACGGGATATCTGCGTCT
TTACGGAATGAATATTTTTTTAAGATTCTTACCTATCTAGACAACAGTGA
CAGGAACTGAGTTTTTAGAGAGTATCATGAAGCATTTCTTTTTTGATTTC
AGAACACTTTAATATCCGATTTGTAATAACAAAAACACATTTTGGAGCTT
AGTTTGAATTAATAACTGGATTTTTATCAAGTCGATTGTTCATCCTGAAG
ATTTTGATATTGTTTAAATCAATTCCTGACTTTGAAACTGATGAAAGCAA
ACTAAACTGTTCACATTTTTACTAGGCTTGGTGTCCTGTTTTATTAAATT
CGGTCACAAGCCATTCGAAGTTTCATAAACTGCGTAGTCAAGTTGGTAAT
CTACAACTATTTTTCTGAAAAATGGTATGATTGAGAAGGCTCCTGTACAA
CCATGTAATTCATTTGGTTTTATATGTACTGTACATCAGATCAAAAGTGG
GTGTAATTGGTCAGTTCGGACAATACACTGCAATGGAAGAAAAGGGGGCA
AATTGAGTTCCAAAATCCTAAAAATGACGATTTGTGTCCTGATTTGAACT
GATCTGCATTTAAAACATTTTTTTCACATTTTGACATTATTTTTGGGCCA
AAGTGTGTCGAAAAAATGTGAGATCAAAAATTTGGAAAGTTTGTACGTGT
TAGTATCCAAAACAGGAGAACTTTTTGTGTTATAATCTTGTTATAATTTG
ATTATCCATTTGCTAAAATACCCTGTAAGATTGAAATGTAGTTTGAATGG
TGAAGTGGTCATCGAAGAAGTCTGCCTTGCTGAAAGGCCGCAGATCGATT
CCTGCGCCCGGCGGTAAAATAATTTTTCGCCACTCCAGACTTTCTTTTAC
TGAGGGGAGTGAATGACGACTCCCTGTAACCTTAGTCATTCAAGGTCAGG
AAAAACAGGTGGGGCCACATCTTGAGGAAAGGTCCCTTCTGGTTCCCCAC
AAATTAAAGTAGTGGTTGGAGCTGGATTGTACGGGGCTGCACGGCGACTA
GCTAAATTAGCTAATAACATCAGTGGGCCCTGTGTTTCCATGGTGTAGAA
CACGAAACCAGCGGAAGGTGCGATTACACACACCCACCCTCAGTGGGATC
TGACATACACTATTCACATATAATGGGAATGTGCTTATCATATCATCAAT
GAGATGAATAGGAATGAATTGGTGCAATAATGTCATCATTGTATGAGCTC
ACCAACTTTAAACATATTTAGTCTTTGATGGCCAGGGGTATTGGCGCGGC
ATGGCCTGATTTTTAATAACTACAATTTTTGGTAAACAAATCGGACTTTG
CAGTTTTTCAAATTTCAATATTGTTTGAATAATACATTACAGAGGTTTAT
CCGGAAAGAGATGTATATTCTGGATATTGGTTTCATACTCCATACTCCAT
GGGGGTCCACTTGGGTAAAGGACCTGCCGCCAAATTAAAGTTGGGAGATT
AGCCTCTCACACCTATGAAATCTCGTGGGCCCTGTCGTTTCTGCGTATTT
AAAGTTAAAGAACTGTATGTGCTCGTTTACTTTCAGCCGATGGTCTGCGG
TGTTACACTTGCATCTCTGGCCTGGGACGAGACTGTAATGATCTCGCAAA
TGCCGAAGAAACCGAATGCGTGGCTGGAGAGCTTCATTGCACCAAGATTG
TCCTTGGGGAAGGTAAGGAGAATGTGTTTGTTTCCCTAATGCTCGGAAAG
TAATGAAAAGCCGCTTTTTCGGGCCTCACTTAAGATGTTGAGCTGAACAA
AAAGCTAGTCTTCGTGCCCTGAACGAGTCAATTTTTCAACGAGACTCTAA
GAGAGAAGGGATAATCTGTTGAAGTGGACAAAAGAGCAAATAATGNTAAA
GTTAAAGAACTGTATGTGCTCGTTTACTTTCAGCCGATGGTCTGCGGTGT
TACACTTGCATCTCTGGCCTGGGACGAGACTGTAATGATCTCGCAAATGC
CGAAGAAACCGAATGCGTGGCTGGAGAGCTTCATTGCACCAAGATTGTCC
TTGGGGAAGGTAAGGAGAATGTGTTTGTTTCCCTAATGCTCGGAAAGTAA
TGAAAAGCCGCTTTTTCGGGCCTCACTTAAGATGTTGAGCTGAACAAAAA
GCTAGTCTTCGTGCCCTGAACGAGTCAATTTTTCAACGAGACTCTAAGAG
AGAAGGGATAATCTGTTGAAGTGGACAAAAGAGCAAATAATGAACGATAC
CTCTTCTGTTCCAGATGTGACCAGGGCCTGCTTCACGGGGAGAAAGTCCC
AACAAGTGGGATGTCAGGAGAATGGCAACACTATCAACTGTATTTGCGAT
GGCGACCTCTGCAATGGAGCCAATGGCCTGAAATCCGCGTCGATGATCCT
CTCCATACCTTTGGCCGTGCTTTTGTCTGTCCTTCTCCGATAGACGATTG
TGTCCCTGTATGTTGTAAAAGCGGAGAACTCGACTCGAAATGGATTAAAC
TCAATGTGTTTTGGTAAAG back to top
Synonyms
The feature 'hypothetical protein CAPTEDRAFT_205745' has the following synonyms
|
