topoisomerase 1b, maker-scaffold462_size163801-snap-gene-0.41 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of topoisomerase 1b vs. L. salmonis genes
Match: EMLSAG00000000293 (supercontig:LSalAtl2s:LSalAtl2s1044:15439:19815:-1 gene:EMLSAG00000000293 transcript:EMLSAT00000000293 description:"maker-LSalAtl2s1044-snap-gene-0.46") HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0 Identity = 453/770 (58.83%), Postives = 543/770 (70.52%), Query Frame = 0 Query: 179 RKEREDRHRSKGKETEEERRERKERERKERKEKEHKDREGTESQEDEDTNGQSEDPMDDDSQDSQA-----------------------SMKEEPMDGE-----DSEEDKPLARNSKKRKVNDDEDEFQPDDDDDEDVPIAKRKRVKKEEPRYKEEDDDYQEDVKPAKSKKKAKPEKKTPSKPASSSASSNPRGGKKVKKEENQEVWKWWEETTHKKDDGTKWQFLEHKGPLFAPDYEPLPSHVHFYYEGKRMRLSQDTEEVATFYGRMLDHDYTTKEVFNRNYMKDWRKVMNEKEKEIIRDISKCDFKEIGVHFKKVSEERKGRSKDDRKAEKERNEAIQKEYGFCTIDGHVEKIGNFRIEPPSLFRGRGEHPKQGMLKKRVSPEDVIINCSKNSDIPKPPEGRKWKKVQHDNTVTWLACWTENIQNQIKYVMLNPSSKLKGEKDMAKYEKARELKKLIHKIRDDYTADFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHPEKDGQEYVVEFDFLGKDSIRYNNCVPVEKRVFKNVQLFMENKKAGDDLFDRLNTSILNEYLNTLMPGLTAKVFRTYNASITLQEQLNQLTEEDDNVPAKMLSYNRANRAVAVLCNHQRAVPKTHEKSMTNLQTKIEGKKDAVNKAEKEFKAAKKSHKNGGSATSKINMDKKKKALERLMEQLNKLETQAVDKEENKSIALGTSKLNYLDPRISVAWCKKFDVPIEKVYNKTQREKFRWAIEMAGPEYQF 920 RKE+E RH+SK ETEEERR RK++ER E++ ++ K+ S +E + ++ M + Q+ Q + K+E M+ E DSE+D PLA+ SK +K D+D ++DVP++KRK+ K ++ E + K +K K K E +P+K GG+K KKE+ EVWKWWEE K DDGTKW+FL+H+GPLFAPDY+ LP VHFYY K+M+LS +TEEVA FY R ++H+YT KEVFNRN+ KDWRKVM +E++II ++SKCDF+EI ++KKVSEERK RSK+++KAEKE+N AIQ E+G C ID H EKIGNFRIEPP LFRGR G + ++ S NQI++V S LK ++ YEKARELK I KIRDDYT DFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLH KDG++Y VEFDFLGKDSIRY+N VPVEKRVFKNVQLFMENK+ DDLFDRLNT+ILNEYLN+LM GLTAKVFRT+NAS TLQ+QL +LTE DDNVPAKMLSYNRANR VA+LCNHQRA PKTH+KSM NLQ KI+ K++A KAEK+ K AKK++KNGGS + K+ MDKKKKALER +EQL+KLETQAVDKEENK+IALGTSKLNYLDPRISVAW KKFDVPIEKVYNKTQR+KFRWAIEMAG +Y F Sbjct: 169 RKEKEQRHKSK--ETEEERRVRKDKERAEKEARKRKEMGYDHSMGEEVSFHNHDEEMKMEQQEQQVKDEPQYEEELHEEQDEFEEDRYNNAKQENMEVEVKVQDDSEDDIPLAKKSKNKKRK------SRDEDSEDDVPLSKRKKPKVKKVERVE----VSKKSKSSKKNHKVKHEVVSPTKS----------GGRK-KKEDKVEVWKWWEE--EKVDDGTKWKFLQHRGPLFAPDYDRLPKGVHFYYNDKKMKLSSETEEVAGFYARXIEHEYTEKEVFNRNFFKDWRKVMTREERDIITNLSKCDFREINTYYKKVSEERKNRSKEEKKAEKEKNAAIQDEFGICVIDNHNEKIGNFRIEPPGLFRGR---YLVGFMDRKYSK-----------------------------------------SNQIRHV----KSFLKIKRGKGYYEKARELKSKIEKIRDDYTVDFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHTVKDGKDYCVEFDFLGKDSIRYHNIVPVEKRVFKNVQLFMENKRGEDDLFDRLNTTILNEYLNSLMKGLTAKVFRTFNASFTLQDQLEELTEADDNVPAKMLSYNRANRKVAILCNHQRAAPKTHDKSMQNLQDKIKAKREAXEKAEKDLKQAKKAYKNGGSTSEKVVMDKKKKALERTVEQLDKLETQAVDKEENKTIALGTSKLNYLDPRISVAWSKKFDVPIEKVYNKTQRDKFRWAIEMAGADYVF 865
BLAST of topoisomerase 1b vs. SwissProt
Match: gi|46397733|sp|Q8SX83.2|SPEN_DROME (RecName: Full=Protein split ends) HSP 1 Score: 62.3882 bits (150), Expect = 1.716e-8 Identity = 67/265 (25.28%), Postives = 125/265 (47.17%), Query Frame = 0 Query: 38 SSSSSKHKSKDKERRKETEEERRIRKDK-------EKKDRDDRHKKEGRREETEEERKIRKEKERREREERYKKEGKRPETEEERRIRKEKE-----RKDREDRSKKEGRREETDEERKIRKEKEKKDRDDRPKRDGKRDESEEERKIRKERERKEREDRHRSKGKETEEERRERKERERKERKEKEHKDREGTESQEDE---------------------DTNGQSEDPMDDDSQDSQASMKEEPMDGEDSEEDKPLARNSKKR 269 ++SSS + + RI D +K +++ RH+KE + + + E+ +RK+ ER E++ + ++E + E + + KE+E ++DRE + ++E E ++ K +KEKE +++D R K +RD E+E + + RE++ RE R K E+++RER+ RE+++ + ++EG + E D E+ MD +Q + + P D E + L+RNS R Sbjct: 1880 NASSSDKRKNSSTSQSSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKDRKAQQEEREKEDRKAKEEEKEREREKKAQEDREKKEREERELREKEQRDKEQKEKEIREKDLREKEQRERDNREKELRDKDLREKEMREKEQREKELHREKDQREREHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIAQGTPGASPSTPSDNTPKERSRKLSRNSPVR 2144
BLAST of topoisomerase 1b vs. nr
Match: gi|1325275174|ref|XP_023322259.1| (DNA topoisomerase I, mitochondrial-like [Eurytemora affinis]) HSP 1 Score: 926.391 bits (2393), Expect = 0.000e+0 Identity = 434/565 (76.81%), Postives = 499/565 (88.32%), Query Frame = 0 Query: 356 VWKWWEETTHKKDDGTKWQFLEHKGPLFAPDYEPLPSHVHFYYEGKRMRLSQDTEEVATFYGRMLDHDYTTKEVFNRNYMKDWRKVMNEKEKEIIRDISKCDFKEIGVHFKKVSEERKGRSKDDRKAEKERNEAIQKEYGFCTIDGHVEKIGNFRIEPPSLFRGRGEHPKQGMLKKRVSPEDVIINCSKNSDIPKPPEGRKWKKVQHDNTVTWLACWTENIQNQIKYVMLNPSSKLKGEKDMAKYEKARELKKLIHKIRDDYTADFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHPEKDGQEYVVEFDFLGKDSIRYNNCVPVEKRVFKNVQLFMENKKAGDDLFDRLNTSILNEYLNTLMPGLTAKVFRTYNASITLQEQLNQLTEEDDNVPAKMLSYNRANRAVAVLCNHQRAVPKTHEKSMTNLQTKIEGKKDAVNKAEKEFKAAKKSHKNGGSATSKINMDKKKKALERLMEQLNKLETQAVDKEENKSIALGTSKLNYLDPRISVAWCKKFDVPIEKVYNKTQREKFRWAIEMAGPEYQF 920 VW+WWEE + +G KW+FLEHKGPLFAP+YE LP +V F+Y+GK MRLSQDTEEVATFYGRMLDHDYTTKEVFN+N+ KDWRK+MN+KEK++IRD+ KCDF EI HFKKVSEERK RSK+++K EKE N+AI +EYGFC IDGH E+IGNFR EPPSLFRGRGEHPKQGM+K+R+ PEDVIINCSK+S+IP PP+GRKWKKVQHDN+VTWLA WTENIQ QIKY+MLNPSSKLKGEKD KYEKAR+LK I +IRDDY D KSKEMRVRQR+VALYFIDKLALRAGNEKDEDQADTVGCCSLR EHI LH E DG+EYVVEFDFLGKDSIRY N V VEKRV+KN++LFMENKK+GDD+FDRLNTSILN+YLNTLM GLTAKVFRTYNAS TLQ+QL++LT+++D + AK+LSYNRANRAVAVLCNHQRAVPKTH+KSM N+ KIE K+DA+ A+KE K+AKK++K+GGS + +DKKKK LERL+EQL KLE Q D++ENKSIALGTSKLNYLDPRISVAWCKK +VP+EKVYNKTQREKFRWAI+MA +Y F Sbjct: 379 VWRWWEEN-EQLPEGVKWRFLEHKGPLFAPEYELLPDNVRFWYDGKVMRLSQDTEEVATFYGRMLDHDYTTKEVFNKNFFKDWRKIMNDKEKDVIRDLQKCDFSEISEHFKKVSEERKARSKEEKKKEKEYNDAIVEEYGFCMIDGHRERIGNFRTEPPSLFRGRGEHPKQGMVKRRIVPEDVIINCSKDSEIPAPPKGRKWKKVQHDNSVTWLASWTENIQGQIKYIMLNPSSKLKGEKDWQKYEKARKLKDKIDQIRDDYMQDLKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRFEHIELHDELDGKEYVVEFDFLGKDSIRYQNSVAVEKRVYKNLKLFMENKKSGDDIFDRLNTSILNQYLNTLMDGLTAKVFRTYNASFTLQQQLDELTQDEDPIQAKLLSYNRANRAVAVLCNHQRAVPKTHDKSMENINVKIEAKQDAIKAAQKELKSAKKNYKSGGSGDKGL-VDKKKKNLERLLEQLEKLEIQKTDRDENKSIALGTSKLNYLDPRISVAWCKKHEVPLEKVYNKTQREKFRWAIDMADADYTF 941
BLAST of topoisomerase 1b vs. nr
Match: gi|914556173|gb|KOB65589.1| (Topoisomerase 1B [Operophtera brumata]) HSP 1 Score: 909.827 bits (2350), Expect = 0.000e+0 Identity = 448/667 (67.17%), Postives = 523/667 (78.41%), Query Frame = 0 Query: 277 EFQPDDDDDEDVPIAKRKRVKKEEPRYKEED---------------------DDY--QEDVKPAKSKKKAKPEKKTPSKPASSSASSNPRGGKKVKKEENQEVWKWWEETTHKKDDGTKWQFLEHKGPLFAPDYEPLPSHVHFYYEGKRMRLSQDTEEVATFYGRMLDHDYTTKEVFNRNYMKDWRKVMNEKEKEIIRDISKCDFKEIGVHFKKVSEERKGRSKDDRKAEKERNEAIQKEYGFCTIDGHVEKIGNFRIEPPSLFRGRGEHPKQGMLKKRVSPEDVIINCSKNSDIPKPPEGRKWKKVQHDNTVTWLACWTENIQNQIKYVMLNPSSKLKGEKDMAKYEKARELKKLIHKIRDDYTADFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHPEKDGQEYVVEFDFLGKDSIRYNNCVPVEKRVFKNVQLFMENKKAGDDLFDRLNTSILNEYLNTLMPGLTAKVFRTYNASITLQEQLNQLTEEDDNVPAKMLSYNRANRAVAVLCNHQRAVPKTHEKSMTNLQTKIEGKKDAVNKAEKEFKAAKKSHKNGGSATSKINMDKKKKALERLMEQLNKLETQAVDKEENKSIALGTSKLNYLDPRISVAWCKKFDVPIEKVYNKTQREKFRWAIEMAGPEYQF 920 E PDD+ +ED+P+ +RKR P EED DDY +E+V+P K KK K K S+P + P KK +EE EVWKWWEE KKDDGTKW+FLEHKGP+FAPDYEPLPS+V F+Y+GK +RLSQDTEEVA FY RMLDHDYTTK FN N+ DWRKVM +E ++I+D+SKC+FKE+ +F VSE+ K RSKD++ + K +NE IQKEYGFCTIDGH EKIGNFRIEPP LFRGRGEHPK GMLK+RV PEDV+INCSK+S IPKPP G KWK+V+HDNTVTWLA WTEN+Q KYVMLNPSSKLKGEKD KYE AR+L K I KIRD Y +D+K+KEMRVRQR+VALYFID+LALRAGNEKD+DQADTVGCCSLRVEHI LH EKDG+EYVV FDFLGKDSIRY N VPVEKRVFKN++LFME+KK DDLFDRLNT LNE+L LMPGLTAK FRTYNASITLQ QL++LT+ D +VP K+L+YNRANRAVAVLCNHQRAVPK H KSM L+ KI+ K++ +++AE+E + A ++ K GS K+N DKKKKALE+L E L KLE Q D++ENK+IALGTSKLNYLDPRISVAWCKK VP+EK+YNKTQR+KFRWAI+MAGPEY F Sbjct: 403 ELPPDDESEEDIPLLERKRPL---PSDSEEDIPLLKRKKPKKEKKVKKEPSYDDYDDEEEVQPKKKKKLEKKPSKVKSEPDDGPS---PPKRKKKGQEEEGEVWKWWEE--EKKDDGTKWKFLEHKGPVFAPDYEPLPSNVRFFYDGKEIRLSQDTEEVAGFYARMLDHDYTTKSAFNSNFFADWRKVMTHEETKLIKDLSKCNFKEMAAYFASVSEKNKNRSKDEKASLKAKNEEIQKEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGMLKRRVMPEDVLINCSKDSKIPKPPAGHKWKEVRHDNTVTWLASWTENVQGNSKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRDTYRSDWKAKEMRVRQRAVALYFIDRLALRAGNEKDDDQADTVGCCSLRVEHIELHKEKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLELFMESKKGNDDLFDRLNTQTLNEHLKELMPGLTAKCFRTYNASITLQNQLDELTDGDASVPEKILAYNRANRAVAVLCNHQRAVPKGHGKSMEALKEKIQLKRNQIDEAEEEMRDATRAAKR-GSVKEKLNADKKKKALEKLREALKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHGVPLEKIYNKTQRDKFRWAIDMAGPEYIF 1060
BLAST of topoisomerase 1b vs. nr
Match: gi|987905862|ref|XP_015440538.1| (PREDICTED: DNA topoisomerase I, mitochondrial isoform X1 [Dufourea novaeangliae] >gi|1016159729|gb|KZC06891.1| DNA topoisomerase 1 [Dufourea novaeangliae]) HSP 1 Score: 908.286 bits (2346), Expect = 0.000e+0 Identity = 452/679 (66.57%), Postives = 532/679 (78.35%), Query Frame = 0 Query: 254 EDSEEDKPLARNSK-----KRKVNDDEDEFQPDDDDDEDVPIAKRKRVKKEE-------PRYKEEDDDYQEDVKPAKSKKKAKPEKKTPSKPASSSASSNPRGGKKVKKEENQEVWKWWEETTHKKDDGTKWQFLEHKGPLFAPDYEPLPSHVHFYYEGKRMRLSQDTEEVATFYGRMLDHDYTTKEVFNRNYMKDWRKVMNEKEKEIIRDISKCDFKEIGVHFKKVSEERKGRSKDDRKAEKERNEAIQKEYGFCTIDGHVEKIGNFRIEPPSLFRGRGEHPKQGMLKKRVSPEDVIINCSKNSDIPKPPEGRKWKKVQHDNTVTWLACWTENIQNQIKYVMLNPSSKLKGEKDMAKYEKARELKKLIHKIRDDYTADFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHPEKDGQEYVVEFDFLGKDSIRYNNCVPVEKRVFKNVQLFMENKKAGDDLFDRLNTSILNEYLNTLMPGLTAKVFRTYNASITLQEQLNQLTEEDDNVPAKMLSYNRANRAVAVLCNHQRAVPKTHEKSMTNLQTKIEGKKDAVNKAEKEFKAAKKSHKNGGSATSKINMDKKKKALERLMEQLNKLETQAVDKEENKSIALGTSKLNYLDPRISVAWCKKFDVPIEKVYNKTQREKFRWAIEMAGPEYQF 920 E+S+ED PL+ SK KR++ D D++EDVP+ RK+ KK E P+Y ED++ Q + KP K + + S +++PR K K+EE QEVWKWWEE KK+DGTKW FLEHKGP+FAP YEPLP +V FYY GK M+LSQDTEEVATFY RMLDHDYTTK FN N+ DWR+VM E E+ I D++KC+FKE+ +F + SEERK +KD+++ KE+NE IQKEYGFCTIDGH EKIGNF+IEPP LFRGRGEHPK G LKKRV PED++INCSK+S IPKPP G KWK+++HD VTWLA WTEN+Q Q+KYVMLNPSSKLKGEKD KYE AR+L + I KIR +Y D+KSKEMR+RQR+VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLH +KDG+EYVV FDFLGKDSIRY N VPVEKRVFKN+QLFMENK GDDLFDRLNT+++N++LN LM GLTAKVFRTYNAS TLQ+QL++LT DD + K+LSYNRANRAVA+LCNHQR+VPKTH KSM NL+ KIE KK+A+ AE K AK+ K+ GS K+ +KKKK L+RL EQL KLE QA DKEENK IALGTSKLNYLDPRISVAWCKK DVPI+K+YNKTQR+KFRWAI+MAGP+Y F Sbjct: 378 EESDEDMPLSTRSKPNTTSKRRIYSD--------DEEEDVPLVVRKKSKKTETKAQIKKPKY--EDEEEQVEQKPKKKRSRT-----------SKGDNTSPR---KKKQEEEQEVWKWWEE--EKKNDGTKWTFLEHKGPVFAPSYEPLPPNVKFYYNGKEMKLSQDTEEVATFYARMLDHDYTTKPAFNSNFFHDWREVMTESERSKISDLNKCNFKEMHTYFLQKSEERKAMTKDEKQKIKEQNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRVMPEDILINCSKDSCIPKPPSGHKWKEIRHDPNVTWLASWTENVQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLDKLTNPDDTIAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIEAKKEAITDAELAVKDAKREAKH-GSVKEKVVYEKKKKTLDRLREQLTKLEVQATDKEENKEIALGTSKLNYLDPRISVAWCKKNDVPIDKIYNKTQRDKFRWAIDMAGPDYVF 1029
BLAST of topoisomerase 1b vs. nr
Match: gi|307182085|gb|EFN69463.1| (DNA topoisomerase 1 [Camponotus floridanus]) HSP 1 Score: 907.131 bits (2343), Expect = 0.000e+0 Identity = 503/918 (54.79%), Postives = 622/918 (67.76%), Query Frame = 0 Query: 36 HRSSSSSKHKSKDKERRKETEEERRIRKDKEKKDRD-DRHKKEGRREETEEERKIRKEKERREREERYKKEGKRPETEEERRIRKEKERKDREDRSKKEGRREETDEERKIRKEKEKKDRDDRPKRDGKRDESEEERKIRKERERKEREDRHRSKGKETEEERRERKERERKERKEKEHKDREGTESQEDEDTNGQSEDPMDDDSQDSQASMKEEPMDG-------------------EDSEEDKPLARNSK-----KRKVNDDEDEFQPDDDDDEDVPIAKRKRVKK--------EEPRYKEEDDDYQEDVKPAKSKKKAKPEKKTPSKPASSSASSNPRGGKKVKKEENQEVWKWWEETTHKKDDGTKWQFLEHKGPLFAPDYEPLPSHVHFYYEGKRMRLSQDTEEVATFYGRMLDHDYTTKEVFNRNYMKDWRKVMNEKEKEIIRDISKCDFKEIGVHFKKVSEERKGRSKDDRKAEKERNEAIQKEYGFCTIDGHVEKIGNFRIEPPSLFRGRGEHPKQGMLKKRVSPEDVIINCSKNSDIPKPPEGRKWKKVQHDNTVTWLACWTENIQNQIKYVMLNPSSKLKGEKDMAKYEKARELKKLIHKIRDDYTADFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHPEKDGQEYVVEFDFLGKDSIRYNNCVPVEKRVFKNVQLFMENKKAGDDLFDRLNTSILNEYLNTLMPGLTAKVFRTYNASITLQEQLNQLTEEDDNVPAKMLSYNRANRAVAVLCNHQRAVPKTHEKSMTNLQTKIEGKKDAVNKAEKEFKAAKKSHKNGGSATSKINMDKKKKALERLMEQLNKLETQAVDKEENKSIALGTSKLNYLDPRISVAWCKKFDVPIEKVYNKTQREKFRWAIEMAGPEYQF 920 H SS +S + KDK+R ++ER +K +RD DRH + E+ R K+K++ +E +++ R K+K+R R D+SK R EKEK+D+D +EE KI++E + K ER + + E + + E ED+D+ G+ + ++ D +A +E MD EDSEEDKPL+ SK KRK+ DE+E DVP++ RK+ K+ ++ ++ E+DD E KSKKK + + ++PR K K+EE QEVWKWWEE KK DGTKW FLEHKGP+FAP YEPLP +V FYY GK +LSQD EEVATFY RMLDHDYTTK+ FN N+ DWR+VM E E+ I D+SKC+FKE+ +F + SEERK +K++++ KE+N+ IQKEYGFC IDGH EKIGNF+IEPP LFRGRGEHPK G LKKRV PEDV+INCSK+S+IPKPP G KWK+V+HD VTWLA WTENIQ Q+KYVMLNPSSKLKGEKD KYE AR+L + I KIR +Y D+KSKEMR+RQR+VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LH ++DG+EYVV FDFLGKDSIRY N VPVEKRVFKN+QLFMENK GDDLFDRLNT+++N++LN LM GLTAKVFRTYNAS TLQ+QL++LT+ +D K+LSYNRANRAVA+LCNHQR+VPKTH KSM NL+ KI+ KK+A+ + E + K AK+ K+ GS K+ +KKKK LERL EQL KLE QA D+EENK IALGTSKLNYLDPRISVAWCKK +VPIEK+YNKTQR+KFRWAI+MAGP+Y F Sbjct: 191 HNSSLNSSSRDKDKDRNLSKDKERENKKHSSSGERDKDRHSTSHSSGDKEKHRSSEKDKDKH-------RESSSSSKDKQHRHEKDKDRH-RHDKSKH-------------RDEKEKRDKD------------KEEIKIKEETDMK------------LNHATNERFHYNLEVKPEIKEEPMTQLELDEDDDSGGERPLYIKEEDDDEEAVKEEASMDSTDGNDTRLSDLHNTTLKTEEDSEEDKPLSSRSKVSPSVKRKIESDEEE---------DVPLSARKKPKRATSSKTKKKKRKHDGENDDDSEVESEEKSKKKVR----------AKGEGASPR---KRKQEEEQEVWKWWEEE--KKSDGTKWHFLEHKGPVFAPPYEPLPPNVKFYYNGKETKLSQDAEEVATFYARMLDHDYTTKDAFNNNFFHDWREVMTESERAKITDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNDEIQKEYGFCVIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDPNVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLDKLTDPNDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIDAKKEAIAECELQVKDAKRDAKH-GSVKEKVTYEKKKKQLERLKEQLTKLEVQATDREENKEIALGTSKLNYLDPRISVAWCKKHNVPIEKIYNKTQRDKFRWAIDMAGPDYVF 1038
BLAST of topoisomerase 1b vs. nr
Match: gi|1134627525|ref|XP_019882816.1| (PREDICTED: DNA topoisomerase I, mitochondrial, partial [Camponotus floridanus]) HSP 1 Score: 904.82 bits (2337), Expect = 0.000e+0 Identity = 503/918 (54.79%), Postives = 622/918 (67.76%), Query Frame = 0 Query: 36 HRSSSSSKHKSKDKERRKETEEERRIRKDKEKKDRD-DRHKKEGRREETEEERKIRKEKERREREERYKKEGKRPETEEERRIRKEKERKDREDRSKKEGRREETDEERKIRKEKEKKDRDDRPKRDGKRDESEEERKIRKERERKEREDRHRSKGKETEEERRERKERERKERKEKEHKDREGTESQEDEDTNGQSEDPMDDDSQDSQASMKEEPMDG-------------------EDSEEDKPLARNSK-----KRKVNDDEDEFQPDDDDDEDVPIAKRKRVKK--------EEPRYKEEDDDYQEDVKPAKSKKKAKPEKKTPSKPASSSASSNPRGGKKVKKEENQEVWKWWEETTHKKDDGTKWQFLEHKGPLFAPDYEPLPSHVHFYYEGKRMRLSQDTEEVATFYGRMLDHDYTTKEVFNRNYMKDWRKVMNEKEKEIIRDISKCDFKEIGVHFKKVSEERKGRSKDDRKAEKERNEAIQKEYGFCTIDGHVEKIGNFRIEPPSLFRGRGEHPKQGMLKKRVSPEDVIINCSKNSDIPKPPEGRKWKKVQHDNTVTWLACWTENIQNQIKYVMLNPSSKLKGEKDMAKYEKARELKKLIHKIRDDYTADFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHPEKDGQEYVVEFDFLGKDSIRYNNCVPVEKRVFKNVQLFMENKKAGDDLFDRLNTSILNEYLNTLMPGLTAKVFRTYNASITLQEQLNQLTEEDDNVPAKMLSYNRANRAVAVLCNHQRAVPKTHEKSMTNLQTKIEGKKDAVNKAEKEFKAAKKSHKNGGSATSKINMDKKKKALERLMEQLNKLETQAVDKEENKSIALGTSKLNYLDPRISVAWCKKFDVPIEKVYNKTQREKFRWAIEMAGPEYQF 920 H SS +S + KDK+R ++ER +K +RD DRH + E+ R K+K++ +E +++ R K+K+R R D+SK R EKEK+D+D +EE KI++E + K ER + + E + + E ED+D+ G+ + ++ D +A +E MD EDSEEDKPL+ SK KRK+ DE+E DVP++ RK+ K+ ++ ++ E+DD E KSKKK + + ++PR K K+EE QEVWKWWEE KK DGTKW FLEHKGP+FAP YEPLP +V FYY GK +LSQD EEVATFY RMLDHDYTTK+ FN N+ DWR+VM E E+ I D+SKC+FKE+ +F + SEERK +K++++ KE+N+ IQKEYGFC IDGH EKIGNF+IEPP LFRGRGEHPK G LKKRV PEDV+INCSK+S+IPKPP G KWK+V+HD VTWLA WTENIQ Q+KYVMLNPSSKLKGEKD KYE AR+L + I KIR +Y D+KSKEMR+RQR+VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LH ++DG+EYVV FDFLGKDSIRY N VPVEKRVFKN+QLFMENK GDDLFDRLNT+++N++LN LM GLTAKVFRTYNAS TLQ+QL++LT+ +D K+LSYNRANRAVA+LCNHQR+VPKTH KSM NL+ KI+ KK+A+ + E + K AK+ K+ GS K+ +KKKK LERL EQL KLE QA D+EENK IALGTSKLNYLDPRISVAWCKK +VPIEK+YNKTQR+KFRWAI+MAGP+Y F Sbjct: 152 HNSSLNSSSRDKDKDRNLSKDKERENKKHSSSGERDKDRHSTSHSSGDKEKHRSSEKDKDKH-------RESSSSSKDKQHRHEKDKDRH-RHDKSKH-------------RDEKEKRDKD------------KEEIKIKEETDMK------------LNHATNERFHYNLEVKPEIKEEPMTQLELDEDDDSGGERPLYIKEEDDDEEAVKEEASMDSTDGNDTRLSDLHNTTLKTEEDSEEDKPLSSRSKVSPSVKRKIESDEEE---------DVPLSARKKPKRATSSKTKKKKRKHDGENDDDSEVESEEKSKKKVR----------AKGEGASPR---KRKQEEEQEVWKWWEEE--KKSDGTKWHFLEHKGPVFAPPYEPLPPNVKFYYNGKETKLSQDAEEVATFYARMLDHDYTTKDAFNNNFFHDWREVMTESERAKITDLSKCNFKEMHAYFLQKSEERKAMTKEEKQKIKEKNDEIQKEYGFCVIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDPNVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLDKLTDPNDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIDAKKEAIAECELQVKDAKRDAKH-GSVKEKVTYEKKKKQLERLKEQLTKLEVQATDREENKEIALGTSKLNYLDPRISVAWCKKHNVPIEKIYNKTQRDKFRWAIDMAGPDYVF 999
BLAST of topoisomerase 1b vs. nr
Match: gi|768417486|ref|XP_011549382.1| (PREDICTED: DNA topoisomerase I, mitochondrial [Plutella xylostella]) HSP 1 Score: 897.501 bits (2318), Expect = 0.000e+0 Identity = 450/687 (65.50%), Postives = 532/687 (77.44%), Query Frame = 0 Query: 242 SQASMKEEPMD---GEDSEEDKPLA-RNSKKRKVNDDEDEFQPDDDDDEDVPIAKRKRVKKE----EPRYKEEDDDYQEDVKPAKSKKKAKPEKKTPSKPASSSASSNPRGGKKVKKEENQEVWKWWEETTHKKDDGTKWQFLEHKGPLFAPDYEPLPSHVHFYYEGKRMRLSQDTEEVATFYGRMLDHDYTTKEVFNRNYMKDWRKVMNEKEKEIIRDISKCDFKEIGVHFKKVSEERKGRSKDDRKAEKERNEAIQKEYGFCTIDGHVEKIGNFRIEPPSLFRGRGEHPKQGMLKKRVSPEDVIINCSKNSDIPKPPEGRKWKKVQHDNTVTWLACWTENIQNQIKYVMLNPSSKLKGEKDMAKYEKARELKKLIHKIRDDYTADFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHPEKDGQEYVVEFDFLGKDSIRYNNCVPVEKRVFKNVQLFMENKKAGDDLFDRLNTSILNEYLNTLMPGLTAKVFRTYNASITLQEQLNQLTEEDDNVPAKMLSYNRANRAVAVLCNHQRAVPKTHEKSMTNLQTKIEGKKDAVNKAEKEFKAAKKSHKNGGSATSKINMDKKKKALERLMEQLNKLETQAVDKEENKSIALGTSKLNYLDPRISVAWCKKFDVPIEKVYNKTQREKFRWAIEMAGPEYQF 920 S + K++P+ EDSEED PL R + KR+ E E +D P+ RK+ KK+ E Y EE D E +K K + KT P+ + +K K+++ EVWKWWEE KKDDGTKW+FLEHKGPLFAP YEP+P +V F Y+GK +RLSQD EEVA FY RMLDHDYTTK VFN N+ DWRKVM E ++I+D+ KCDFKE+ +F+ VSE+ K R+K+++ K NE IQKEYGFC IDGH EKIGNFRIEPP LFRGRGEHPK GMLKKRV PEDV+INCSK+S++PKPP+G KWK+V+HDNTVTWLA WTEN+Q Q KYVMLNPSSKLKGEKD KYE AR+L K I KIRD Y +D+K+KEMRVRQR+VALYFID+LALRAGNEKD+DQADTVGCCSLRVEHI LH EKDG+EYVV FDFLGKDSIRY N VPVEKRVFKN++LFMENKK DDLFDRLNT LNE+L LMPGLTAKVFRTYNASITLQ QL++LT+ D ++P K+L+YNRANRAVAVLCNHQRAVPK H+KSM L+ KI+ K+D +++AE++ + + K+ K GS K+N DKK KALERL +QL KLE Q D++ENK+IALGTSKLNYLDPRISVAWCKK DVPIEK+YNKTQR+KFRWAI+MAGPEY F Sbjct: 277 SMSQFKDDPLSEIKDEDSEEDTPLLERMAPKRRAVKSESE--------DDTPLTMRKKPKKKKIKKESGYDEEMSD-DEPKAKKPTKTKPAAKVKTEDGPSPTK--------RKKKQDDEPEVWKWWEE--EKKDDGTKWKFLEHKGPLFAPPYEPIPENVKFRYDGKVVRLSQDAEEVAGFYARMLDHDYTTKSVFNNNFFADWRKVMTHDEAKLIKDLKKCDFKEMQAYFQSVSEKNKNRTKEEKAQLKATNEEIQKEYGFCIIDGHKEKIGNFRIEPPGLFRGRGEHPKMGMLKKRVMPEDVLINCSKDSNVPKPPKGHKWKEVRHDNTVTWLASWTENVQGQTKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRDTYRSDWKAKEMRVRQRAVALYFIDRLALRAGNEKDDDQADTVGCCSLRVEHIALHKEKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLELFMENKKDSDDLFDRLNTQTLNEHLKELMPGLTAKVFRTYNASITLQRQLDELTDGDASIPEKILAYNRANRAVAVLCNHQRAVPKGHDKSMEALKEKIQAKRDQIDEAEEDVRQSAKAAKR-GSVKEKMNHDKKTKALERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIYNKTQRDKFRWAIDMAGPEYVF 943
BLAST of topoisomerase 1b vs. nr
Match: gi|1209684912|gb|OWR41552.1| (topoisomerase 1B [Danaus plexippus plexippus]) HSP 1 Score: 897.116 bits (2317), Expect = 0.000e+0 Identity = 441/653 (67.53%), Postives = 509/653 (77.95%), Query Frame = 0 Query: 286 EDVPIAKRKRVKKEEPRYKEED------------------DDYQEDVKPAKSKKKAKPEKKTPSKPASSSASSNPRGGKKVKKEENQEVWKWWEETTHKKDDGTKWQFLEHKGPLFAPDYEPLPSHVHFYYEGKRMRLSQDTEEVATFYGRMLDHDYTTKEVFNRNYMKDWRKVMNEKEKEIIRDISKCDFKEIGVHFKKVSEERKGRSKDDRKAEKERNEAIQKEYGFCTIDGHVEKIGNFRIEPPSLFRGRGEHPKQGMLKKRVSPEDVIINCSKNSDIPKPPEGRKWKKVQHDNTVTWLACWTENIQNQIKYVMLNPSSKLKGEKDMAKYEKARELKKLIHKIRDDYTADFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHPEKDGQEYVVEFDFLGKDSIRYNNCVPVEKRVFKNVQLFMENKKAGDDLFDRLNTSILNEYLNTLMPGLTAKVFRTYNASITLQEQLNQLTEEDDNVPAKMLSYNRANRAVAVLCNHQRAVPKTHEKSMTNLQTKIEGKKDAVNKAEKEFKAAKKSHKNGGSATSKINMDKKKKALERLMEQLNKLETQAVDKEENKSIALGTSKLNYLDPRISVAWCKKFDVPIEKVYNKTQREKFRWAIEMAGPEYQF 920 EDVP+ +RK +KK EED DDY ++ K K K K+ A S R K K+ E QEVWKWWEE+ K DDGTKW FLEHKGPLFAP YEPLP +V F Y+GK +RLSQD+EEVA FY RMLDHDYTTK VFN N+ DWRKVM +E ++I+D+SKCDFKE+ +F+ VSE+ K RSK+++ A K +NE IQKEYGFCTIDGH EKIGNFRIEPP LFRGRGEHPK GMLK+RV PEDVIINCSK+S IPKPP G KWK+V+HDNTVTWLA WTEN+Q Q KYVMLNPSSKLKGEKD KYE AR L K I KIR+ Y +D+K+KEMRVRQR+VALYFID+LALRAGNEKD+DQADTVGCCSLRVEHI LH EKDG+E+VV FDFLGKDSIRY N VPVEKRVFKN+++FMENKK DDLFDRLNT LNE+L LMPGLTAKVFRTYNASITLQ QL +LT+ D +P K+L+YNRANRAVA+LCNHQRAVPK H KSM L+ KI+ K+D V++AE +++ A K+ K GS K+ DKKKKALERL EQL KLE Q D++ENK+IALGTSKLNYLDPRISV+WCKK VPIEK+YNKTQR+KFRWAI+MAGP+Y F Sbjct: 289 EDVPLLERKAIKKRAISESEEDTPLLQRKKQKKKVKKENYDDYDDEESQQKKKAKKTKSTKSIKTEADDGPSPTKR---KKKENEEQEVWKWWEES--KTDDGTKWHFLEHKGPLFAPLYEPLPENVKFRYDGKIVRLSQDSEEVAGFYARMLDHDYTTKTVFNTNFFNDWRKVMTNEEAKLIKDLSKCDFKEMQTYFQSVSEKNKNRSKEEKAALKAKNEEIQKEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGMLKRRVMPEDVIINCSKDSKIPKPPAGHKWKEVRHDNTVTWLASWTENVQQQAKYVMLNPSSKLKGEKDWQKYETARNLHKCIDKIRETYKSDWKAKEMRVRQRAVALYFIDRLALRAGNEKDDDQADTVGCCSLRVEHIELHKEKDGKEFVVVFDFLGKDSIRYYNEVPVEKRVFKNLEIFMENKKDSDDLFDRLNTQTLNEHLKELMPGLTAKVFRTYNASITLQRQLEELTDPDATIPEKILAYNRANRAVAILCNHQRAVPKGHSKSMEALKEKIQAKRDQVDEAEADYRDAAKAAKR-GSVKEKLACDKKKKALERLKEQLKKLELQETDRDENKTIALGTSKLNYLDPRISVSWCKKHGVPIEKIYNKTQRDKFRWAIDMAGPDYIF 935
BLAST of topoisomerase 1b vs. nr
Match: gi|939255986|ref|XP_014247767.1| (DNA topoisomerase I, mitochondrial isoform X1 [Cimex lectularius]) HSP 1 Score: 896.345 bits (2315), Expect = 0.000e+0 Identity = 453/695 (65.18%), Postives = 542/695 (77.99%), Query Frame = 0 Query: 236 DDDSQD--SQASMKEEPM-DGEDSEEDKPLARNSKKRKVNDDEDEFQPDDDDDEDVPIAKRKRVKKEEPRYKEEDDDYQEDV-------KPAKSKKKAKPEKKTPSKPASSSASSNPRGGKKVKKEENQEVWKWWEETTHKKDDGTKWQFLEHKGPLFAPDYEPLPSHVHFYYEGKRMRLSQDTEEVATFYGRMLDHDYTTKEVFNRNYMKDWRKVMNEKEKEIIRDISKCDFKEIGVHFKKVSEERKGRSKDDRKAEKERNEAIQKEYGFCTIDGHVEKIGNFRIEPPSLFRGRGEHPKQGMLKKRVSPEDVIINCSKNSDIPKPPEGRKWKKVQHDNTVTWLACWTENIQNQIKYVMLNPSSKLKGEKDMAKYEKARELKKLIHKIRDDYTADFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHPEKDGQEYVVEFDFLGKDSIRYNNCVPVEKRVFKNVQLFMENKKAGDDLFDRLNTSILNEYLNTLMPGLTAKVFRTYNASITLQEQLNQLTEEDDNVPAKMLSYNRANRAVAVLCNHQRAVPKTHEKSMTNLQTKIEGKKDAVNKAEKEFKAAKKSHKNGGSATSKINMDKKKKALERLMEQLNKLETQAVDKEENKSIALGTSKLNYLDPRISVAWCKKFDVPIEKVYNKTQREKFRWAIEMAGPEYQF 920 DDDS + + +M+E + EDSEED PL+ S+K + DED+ DVP+ RK++K E+ + ++ + KP K+K + K K + ++SA+ +PR KK K EE QEVWKWWEE KK DG KW FLEHKGP+FAP YEPLP V FYY+GK +RLS++ EEVATFYGRM++HDYT KEVFN N+ KDW+K M KE+E+I D+SKC+F+ I +F+K SEERK +K+++ K++NE +EYGFC IDGH EKIGNF+IEPPSLFRGRGEHPK GMLKKRV PEDV INCSK+S IP PP G KWK+V+HDNTVTWLA WTEN+Q Q+KYVMLNPSSKLKGEKD KYE AR+L I KIR DY D+KSKEM++RQR+VA+YFIDKLALRAGNEKDEDQADTVGCCSLRVEHI L PEKDG+EYVV FDFLGKDSIRY N VPVEKRVFKN+QLF+E KK DDLFDRLNT++LN++L LM GLTAKVFRTYNAS TLQ+QLN+LT++D +P L+YNRANRAVA+LCNHQR+VPK+H+KSM NL+ KI K++ + +AEK++K AKK KN GSA KI DKKKKALERL EQL KLE Q D+EENK+IALGTSKLNYLDPRISVAWCKK +VPIEKVYNKTQR+KFRWAI+MAGP+Y F Sbjct: 298 DDDSYNLHIETTMEESTFKEEEDSEEDIPLS--SRKHSMQSDEDD---------DVPLTSRKKLKTEKQKSSKKRKKSFDSEEEEEDDFKPVKTKAQKKSSK--VKQEQNTSATQSPR--KKRKLEEEQEVWKWWEE--EKKPDGVKWNFLEHKGPVFAPPYEPLPHDVKFYYDGKEVRLSEEAEEVATFYGRMIEHDYTQKEVFNNNFFKDWKKTMTPKERELITDLSKCNFRHINAYFQKKSEERKAMTKEEKAELKKKNEEQVQEYGFCIIDGHKEKIGNFKIEPPSLFRGRGEHPKMGMLKKRVMPEDVSINCSKDSKIPVPPPGHKWKEVKHDNTVTWLASWTENVQGQVKYVMLNPSSKLKGEKDWQKYETARKLASQIDKIRRDYREDWKSKEMKIRQRAVAMYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLFPEKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFIEGKKGSDDLFDRLNTTVLNKHLTELMDGLTAKVFRTYNASWTLQQQLNELTKDDYTLPEMCLAYNRANRAVAILCNHQRSVPKSHQKSMENLKEKISNKREQIEEAEKQYKYAKKDAKN-GSAKEKIVADKKKKALERLKEQLRKLEVQETDREENKTIALGTSKLNYLDPRISVAWCKKHNVPIEKVYNKTQRDKFRWAIDMAGPDYVF 974
BLAST of topoisomerase 1b vs. nr
Match: gi|343175107|gb|AEM00018.1| (topoisomerase 1B [Spodoptera exigua]) HSP 1 Score: 895.96 bits (2314), Expect = 0.000e+0 Identity = 453/688 (65.84%), Postives = 539/688 (78.34%), Query Frame = 0 Query: 242 SQASMKEEPMDG----EDSEEDKPLA-RNSKKRKVNDDEDEFQPDDDDDEDVPIAKRKRVKKE---EPRYKEEDDDYQEDVKPAKSKKKAKPEKKTPSKPASSSASSNPRGGKKVKKEENQ-EVWKWWEETTHKKDDGTKWQFLEHKGPLFAPDYEPLPSHVHFYYEGKRMRLSQDTEEVATFYGRMLDHDYTTKEVFNRNYMKDWRKVMNEKEKEIIRDISKCDFKEIGVHFKKVSEERKGRSKDDRKAEKERNEAIQKEYGFCTIDGHVEKIGNFRIEPPSLFRGRGEHPKQGMLKKRVSPEDVIINCSKNSDIPKPPEGRKWKKVQHDNTVTWLACWTENIQNQIKYVMLNPSSKLKGEKDMAKYEKARELKKLIHKIRDDYTADFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHPEKDGQEYVVEFDFLGKDSIRYNNCVPVEKRVFKNVQLFMENKKAGDDLFDRLNTSILNEYLNTLMPGLTAKVFRTYNASITLQEQLNQLTEEDDNVPAKMLSYNRANRAVAVLCNHQRAVPKTHEKSMTNLQTKIEGKKDAVNKAEKEFKAAKKSHKNGGSATSKINMDKKKKALERLMEQLNKLETQAVDKEENKSIALGTSKLNYLDPRISVAWCKKFDVPIEKVYNKTQREKFRWAIEMAGPEYQF 920 S + K+EP+ E+S+ED P + R KR+ + +ED+P+ +RK+ KK+ EP Y ++ DD +E K KSK + + S+P + P K+ KK+E++ EVWKWWEE KKDDGTKW+FLEHKGP+FAPDYEPLP +V FYY+GK MRLSQD EEVA FY RMLDH+YTTK FN N+ DWRKVM +E +II+D+SKC+FKE+ +F+ VSE+ + R+K+++ A K +NE IQKEYGFC IDGH EKIGNFRIEPP LFRGRGEHPK GMLK+RV PEDV+INCSK+S IPKPP G KWK+V+HDNTVTWLA WTEN+Q Q KYVMLNPSSKLKGEKD KYE AR+L K I IR++Y D+K+KEMRVRQR+VALYFIDKLALRAGNEKD+DQADTVGCCSLRVEHI LH EKDG+EYVV FDFLGKDSIRY N VPVEKRVFKN++LFMENKK DDLFDRLNT LNE+L LMPGLTAKVFRTYNASITLQ QL++LT+ ++P K+L+YNRANRAVAVLCNHQRAVPK H KSM L+ KI+ K+D V++AE++ + A K+ K GS K+ DKKKKALERL EQL KLE Q D++ENK+IALGTSKLNYLDPRISVAWCKK VPIEK+YNKTQR+KFRWAI+MAGPEY F Sbjct: 260 SLSQFKDEPLSELPPEEESDEDSPSSERIGNKRRA---------PSESEEDIPLLQRKKSKKKIKKEPTYDDDMDDEEEKPKKKKSKPVKVKQTQVKSEP-----NDGPSPTKRKKKQEDEPEVWKWWEE--EKKDDGTKWKFLEHKGPVFAPDYEPLPENVKFYYDGKEMRLSQDAEEVAGFYARMLDHEYTTKSTFNNNFFNDWRKVMTHEETKIIKDLSKCNFKEMHAYFQSVSEKNRNRTKEEKAALKAKNEEIQKEYGFCIIDGHKEKIGNFRIEPPGLFRGRGEHPKMGMLKRRVMPEDVLINCSKDSKIPKPPPGHKWKEVKHDNTVTWLASWTENVQGQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDVIRENYKNDWKAKEMRVRQRAVALYFIDKLALRAGNEKDDDQADTVGCCSLRVEHIALHKEKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLELFMENKKDSDDLFDRLNTQTLNEHLKDLMPGLTAKVFRTYNASITLQRQLDELTDASASIPEKILAYNRANRAVAVLCNHQRAVPKGHSKSMEALKEKIQAKRDQVDEAEEDLREAAKAAKR-GSVKEKLACDKKKKALERLREQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHGVPIEKIYNKTQRDKFRWAIDMAGPEYIF 930
BLAST of topoisomerase 1b vs. nr
Match: gi|350404638|ref|XP_003487171.1| (DNA topoisomerase I, mitochondrial isoform X1 [Bombus impatiens]) HSP 1 Score: 894.419 bits (2310), Expect = 0.000e+0 Identity = 454/718 (63.23%), Postives = 550/718 (76.60%), Query Frame = 0 Query: 219 TESQEDEDTNGQSEDPMDDDSQDSQASMKEE-PMDGEDSEEDKPLARNSKKRKVNDDEDEFQP---------------DDDDDEDVPIAKRKRVKKEEPRYKEEDDDYQEDVKPAKSKKKAKPEKKTPSKPASSSASSNPRGGKKVKKEENQEVWKWWEETTHKKDDGTKWQFLEHKGPLFAPDYEPLPSHVHFYYEGKRMRLSQDTEEVATFYGRMLDHDYTTKEVFNRNYMKDWRKVMNEKEKEIIRDISKCDFKEIGVHFKKVSEERKGRSKDDRKAEKERNEAIQKEYGFCTIDGHVEKIGNFRIEPPSLFRGRGEHPKQGMLKKRVSPEDVIINCSKNSDIPKPPEGRKWKKVQHDNTVTWLACWTENIQNQIKYVMLNPSSKLKGEKDMAKYEKARELKKLIHKIRDDYTADFKSKEMRVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHPEKDGQEYVVEFDFLGKDSIRYNNCVPVEKRVFKNVQLFMENKKAGDDLFDRLNTSILNEYLNTLMPGLTAKVFRTYNASITLQEQLNQLTEEDDNVPAKMLSYNRANRAVAVLCNHQRAVPKTHEKSMTNLQTKIEGKKDAVNKAEKEFKAAKKSHKNGGSATSKINMDKKKKALERLMEQLNKLETQAVDKEENKSIALGTSKLNYLDPRISVAWCKKFDVPIEKVYNKTQREKFRWAIEMAGPEYQF 920 E ++D+D+ G+ + +D D +A +EE MD D + + ++ K ++ DE P D ++++DVP++ RK+ KK + + K++ +++D + ++K P+KK AS +S+PR K K+EE QEVWKWWEE KK+DGTKW FLEHKGP+FAP YEPLP V FYY GK M+LSQD EEVATFY RMLDHDYTTK FN N+ DWR+VM E E+ I D+SKC+FKE+ +F + SEERK +K++++ KE NE IQKEYGFC IDGH EKIGNF+IEPP LFRGRGEHPK G LK+RV PED++INCSK+S+IPKPP G KWK+V+HD VTWLA WTENIQ Q+KYVMLNPSSKLKGEKD KYE AR+L +LI KIR +Y D+KSKEMR+RQR+VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLH +KDG+EYVV FDFLGKDSIRY N VPVEKRVFKN+QLFMENK DDLFDRLNT+++N++LN LM GLTAKVFRTYNAS TLQ+QL++LT DD K+LSYNRANRAVA+LCNHQR+VPKTH KSM NL+ KIE KK A+++AE K AK+ K+ GS K+ +KKKKAL+RL EQL KLE QA DKEENK IALGTSKLNYLDPRI+VAWCKK +VPIEK+YNKTQR+KFRWAI+MAGP+Y F Sbjct: 321 IEPEDDDDSGGEQPLYIKEDDDDEEAMNEEEGSMDSTDGNDTRLSDLHNTTIKTEEESDEDMPLSARSMAPTSVKRSLDSEEEDDVPLSARKKSKKNDTKAKKKKRKHEDDEDEDEIEQK--PKKKGGR--ASKGENSSPR---KKKQEEEQEVWKWWEEE--KKNDGTKWTFLEHKGPVFAPPYEPLPPDVKFYYCGKEMKLSQDAEEVATFYARMLDHDYTTKSAFNNNFFHDWREVMTESERAKINDLSKCNFKEMHSYFVQKSEERKAMTKEEKQKIKETNEQIQKEYGFCIIDGHKEKIGNFKIEPPGLFRGRGEHPKMGKLKRRVMPEDILINCSKDSNIPKPPPGHKWKEVRHDPNVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQLIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPSDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLDKLTNPDDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIEAKKQAISEAEHAVKEAKRDAKH-GSVKEKVVYEKKKKALDRLKEQLTKLEVQATDKEENKEIALGTSKLNYLDPRITVAWCKKHNVPIEKIYNKTQRDKFRWAIDMAGPDYVF 1028 The following BLAST results are available for this feature:
BLAST of topoisomerase 1b vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of topoisomerase 1b vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 21
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BLAST of topoisomerase 1b vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold462_size163801:34541..41233- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold462_size163801-snap-gene-0.41 ID=maker-scaffold462_size163801-snap-gene-0.41|Name=topoisomerase 1b|organism=Tigriopus kingsejongensis|type=gene|length=6693bp|location=Sequence derived from alignment at scaffold462_size163801:34541..41233- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'topoisomerase 1b' has the following synonyms
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