retinoid x, maker-scaffold48_size466083-snap-gene-1.23 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 112.079 bits (279), Expect = 4.636e-29 Identity = 49/86 (56.98%), Postives = 63/86 (73.26%), Query Frame = 0 Query: 56 VCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQR 141 VC VCGD+A H+HYGG CFSC+AFFRR+V H+ + C DQ C I I +RK CQ+CR+KKCL++GM PSWVLS++E+ R Sbjct: 90 VCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHT----TYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSR 171
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 97.4413 bits (241), Expect = 1.036e-23 Identity = 54/138 (39.13%), Postives = 81/138 (58.70%), Query Frame = 0 Query: 6 ILDLCEADLNSL--ASSTHSHGVNSPESEQSSSSLSPKRHGNPNPSFPHVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQR 141 IL L E+ + L A + + +NS + SS + +R P +C +CG+ A +HV+YGG+CC SC+AFFRR+V +S K + C ++C I++++RK CQ CRF+KC+ GM SWVL D ER + Sbjct: 61 ILSLSESSDSFLSNADQVNFNELNSATLSEPSSQIIIRREALPR--------LCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYK-QFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSK 189
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 96.6709 bits (239), Expect = 1.458e-23 Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = 0 Query: 18 ASSTHSHGVNSPESEQSSSSLSPKRHGNPNPSFPHVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQR 141 A + + +NS + SS + R P +C +CG+ A +HV+YGG+CC SC+AFFRR+V +S K + C ++C I++K+RK CQ CRF+KC+ GM SWV D ER + Sbjct: 76 ADQENFNELNSTTLSEDSSQIIIGRQALPR--------LCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYK-QFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSK 190
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 85.8853 bits (211), Expect = 1.056e-19 Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 0 Query: 54 KTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQ-----RFQKRKAKQELKQE 154 K C +C D A H+HYG C SC+AFFRRAV ++ + C D+ C I ++RK CQ+CRF KCL+ GM +WV+S+ E+ + R +K KA+Q L E Sbjct: 60 KVTCHICSDTANDHIHYGAIACXSCRAFFRRAVICNAE----YHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVMSESEKREKKEKIRLKKLKAQQLLDPE 161
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6") HSP 1 Score: 78.1814 bits (191), Expect = 5.048e-17 Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 0 Query: 53 VKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQR------FQKRKAK--QELKQEQLAFSG 160 ++ +C VCGD+ + HYG C SCK FF+R V K++ C D++C ID RK C YCRF+KCLD GM V D R R +++ +A+ Q L+Q Q+ G Sbjct: 182 MEELCPVCGDK-VSGYHYGLLTCESCKGFFKRTVQ----NKKVYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGRNKFGPMYKRDRARKLQVLRQRQVIHGG 292
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 75.0998 bits (183), Expect = 5.522e-16 Identity = 43/105 (40.95%), Postives = 55/105 (52.38%), Query Frame = 0 Query: 41 KRHGNPNPSFPHVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQ-----NCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQ 140 KR P P + VC +CGD A H HYG CFSC+AFF R V H + F+C C I +R CQ+CR++ CL GM PS+V + +ER Q Sbjct: 125 KRKRRPEP----MTDVCRICGDIAPPHNHYGAIACFSCRAFFGRTV--HKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEERLQ 223
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5") HSP 1 Score: 72.4034 bits (176), Expect = 4.192e-15 Identity = 44/111 (39.64%), Postives = 56/111 (50.45%), Query Frame = 0 Query: 30 ESEQSSSSLSPKRHGN-------PNPSFP------HVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGM 127 ES S + P HG+ PN ++P K C +CGD A HYG C CK FF+R V K + CR +++C ID + R CQYCR+ KCLDTGM Sbjct: 51 ESMYGSQAPHPGVHGHARSTQSPPNNTYPPNHPLSGSKHFCSICGDRA-SGKHYGVYSCEGCKGFFKRTVR----KELTYACRENRDCVIDKRQRNRCQYCRYMKCLDTGM 156
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1") HSP 1 Score: 71.633 bits (174), Expect = 9.155e-15 Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 0 Query: 56 VCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQR 141 +C VCGD A HYG R C CK FF+R V K + C D+NC +D + R CQ+CRF+KCL GM V +D + +R Sbjct: 408 LCAVCGDNAACQ-HYGVRTCEGCKGFFKRTVQ----KNAKYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRR 488
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53") HSP 1 Score: 71.2478 bits (173), Expect = 1.395e-14 Identity = 43/109 (39.45%), Postives = 54/109 (49.54%), Query Frame = 0 Query: 27 NSPESEQSSSSLSPKRHGNPNPSFPHVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSD 135 N P QS P + NP+ S P VC++C D A +HYG C CK FF+R V +I+ C D C I+ R CQYCRF+KCL GM + V D Sbjct: 257 NPPPIHQSGG---PGDNNNPS-SQPQQSLVCMICEDRATG-LHYGIITCEGCKGFFKRTVQ----NKRIYTCVADGECEINKAQRNRCQYCRFQKCLQKGMVLAAVRED 356
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13") HSP 1 Score: 69.3218 bits (168), Expect = 4.932e-14 Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 0 Query: 46 PNPSFPHVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAK 148 P P P+ C VCGD A HYG C CK FFRR+V K +++ CR ++ C ++ R C+YCR K C+ GM S V ++ +R +K AK Sbjct: 140 PPPLAPNNIQNCAVCGDRATGK-HYGAASCDGCKGFFRRSVR----KERVYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRISCRKKTSAK 237
BLAST of retinoid x vs. SwissProt
Match: gi|81907060|sp|Q9QWM1.1|NR5A2_RAT (RecName: Full=Nuclear receptor subfamily 5 group A member 2; AltName: Full=FTZ-F1 beta; AltName: Full=Liver receptor homolog 1; Short=LRH-1) HSP 1 Score: 77.0258 bits (188), Expect = 3.604e-15 Identity = 45/109 (41.28%), Postives = 59/109 (54.13%), Query Frame = 0 Query: 53 VKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQ---KRKAKQELKQEQLAF 158 ++ +C VCGD+ + HYG C SCK FF+R V K + C +QNC ID RK C YCRFKKC+D GM V +D R R + K + LKQ++ A Sbjct: 103 LEELCPVCGDK-VSGYHYGLLTCESCKGFFKRTVQNQ----KRYTCIENQNCQIDKTQRKRCPYCRFKKCIDVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAL 206
BLAST of retinoid x vs. SwissProt
Match: gi|7676159|sp|P45448.3|NR5A2_MOUSE (RecName: Full=Nuclear receptor subfamily 5 group A member 2; AltName: Full=Liver receptor homolog 1; Short=LRH-1) HSP 1 Score: 77.0258 bits (188), Expect = 4.155e-15 Identity = 45/109 (41.28%), Postives = 59/109 (54.13%), Query Frame = 0 Query: 53 VKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQ---KRKAKQELKQEQLAF 158 ++ +C VCGD+ + HYG C SCK FF+R V K + C +QNC ID RK C YCRFKKC+D GM V +D R R + K + LKQ++ A Sbjct: 103 LEELCPVCGDK-VSGYHYGLLTCESCKGFFKRTVQNQ----KRYTCIENQNCQIDKTQRKRCPYCRFKKCIDVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAL 206
BLAST of retinoid x vs. SwissProt
Match: gi|2500907|sp|Q24143.1|HR96_DROME (RecName: Full=Nuclear hormone receptor HR96; Short=dHR96; AltName: Full=Nuclear receptor subfamily 1 group J member 1) HSP 1 Score: 76.6406 bits (187), Expect = 5.716e-15 Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = 0 Query: 57 CLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDE---REQRFQKRKAKQELKQ 153 C VCGD+A+ + ++ C SCKAFFRR ++L K F C +QNC I + +R+ CQ CR +KCLD GM ++S+++ + ++ + +AK+ L + Sbjct: 7 CAVCGDKALGY-NFNAVTCESCKAFFRR----NALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRRLME 101
BLAST of retinoid x vs. SwissProt
Match: gi|13431789|sp|O18971.1|PPARG_BOVIN (RecName: Full=Peroxisome proliferator-activated receptor gamma; Short=PPAR-gamma; AltName: Full=Nuclear receptor subfamily 1 group C member 3) HSP 1 Score: 76.2554 bits (186), Expect = 7.410e-15 Identity = 52/132 (39.39%), Postives = 65/132 (49.24%), Query Frame = 0 Query: 3 PFPILDLCEAD------LNSLASSTHSHGVNSPESEQSSSSLSPKRHGNPNPSFPHVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMN 128 PFP D AD L S+ V SP + L K H P+ S ++ C VCGD+A HYG C CK FFRR ++++K+ R D NC I KSR CQYCRF+KCL GM+ Sbjct: 82 PFPRADPMVADYKYDLKLQEYQSAIKVEPV-SPPYYSEKTQLYSKPHEEPSNSLMAIE--CRVCGDKA-SGFHYGVHACEGCKGFFRR-----TIRLKLIYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMS 204
BLAST of retinoid x vs. SwissProt
Match: gi|13431782|sp|O62807.1|PPARG_PIG (RecName: Full=Peroxisome proliferator-activated receptor gamma; Short=PPAR-gamma; AltName: Full=Nuclear receptor subfamily 1 group C member 3) HSP 1 Score: 75.8702 bits (185), Expect = 1.013e-14 Identity = 52/132 (39.39%), Postives = 64/132 (48.48%), Query Frame = 0 Query: 3 PFPILDLCEAD------LNSLASSTHSHGVNSPESEQSSSSLSPKRHGNPNPSFPHVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMN 128 PFP D AD L S+ V SP + L K H P+ S ++ C VCGD+A HYG C CK FFRR + ++K+ R D NC I KSR CQYCRF+KCL GM+ Sbjct: 81 PFPRADPMVADYKYDLKLQDYQSAIKVEPV-SPPYYSEKTQLYNKPHEEPSNSLMAIE--CRVCGDKA-SGFHYGVHACEGCKGFFRRTI-----RLKLIYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMS 203
BLAST of retinoid x vs. SwissProt
Match: gi|1350913|sp|P48443.1|RXRG_HUMAN (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 75.485 bits (184), Expect = 1.075e-14 Identity = 52/148 (35.14%), Postives = 74/148 (50.00%), Query Frame = 0 Query: 20 STHSHGVNSPESEQSSSSLSPKRHGNPNPSFPH------VKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQELKQEQLAFSGH 161 S+ + VNS S + L P G N ++P VK +C +CGD + HYG C CK FF+R + K I+ CR++++C ID + R CQYCR++KCL GM V E QR ++R + + A SGH Sbjct: 97 SSQLNVVNSVSSSEDIKPL-PGLPGIGNMNYPSTSPGSLVKHICAICGDRS-SGKHYGVYSCEGCKGFFKRTIR----KDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAV---QEERQRSRERAE----SEAECATSGH 231
BLAST of retinoid x vs. SwissProt
Match: gi|6015050|sp|O18473.1|ECR_HELVI (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; AltName: Full=Ecdysteroid receptor; AltName: Full=HvEcR; AltName: Full=Nuclear receptor subfamily 1 group H member 1) HSP 1 Score: 75.485 bits (184), Expect = 1.273e-14 Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 0 Query: 56 VCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQE 150 +CLVCGD A + HY C CK FFRR+V K ++ C+ C +DI R+ CQ CR KKCL GM P V+ +++ + +++KA++E Sbjct: 162 LCLVCGDRASGY-HYNALTCEGCKGFFRRSVT----KNAVYICKFGHACEMDIYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKKAQRE 251
BLAST of retinoid x vs. SwissProt
Match: gi|81888393|sp|Q5BJR8.1|RXRG_RAT (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 75.0998 bits (183), Expect = 1.404e-14 Identity = 64/187 (34.22%), Postives = 90/187 (48.13%), Query Frame = 0 Query: 20 STHSHGVNSPESEQSSSSLSPKRHGNPNPSFPH------VKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQELKQEQLAFSGH---GLSRRMASRSGREKQSHPKFESDSLPTSVFSSTNAP 197 S+ + VNS S + L P G N ++P VK +C +CGD + HYG C CK FF+R + K I+ CR++++C ID + R CQYCR++KCL GM V E QR ++R + + A +GH + R + + E PK ES SV SSTN P Sbjct: 97 SSQLNVVNSVSSSEDIKPL-PGLPGIGNMNYPSTSPGSLVKHICAICGDRS-SGKHYGVYSCEGCKGFFKRTIR----KDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAV---QEERQRSRERAE----SEAECASTGHEDMPVERILEA----ELAVEPKTESYG-DMSVESSTNDP 265
BLAST of retinoid x vs. SwissProt
Match: gi|75062013|sp|Q5REL6.1|RXRG_PONAB (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 75.0998 bits (183), Expect = 1.486e-14 Identity = 48/132 (36.36%), Postives = 68/132 (51.52%), Query Frame = 0 Query: 20 STHSHGVNSPESEQSSSSLSPKRHGNPNPSFPH------VKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKR 145 S+ + VNS S + L P G N ++P VK +C +CGD + HYG C CK FF+R + K I+ CR++++C ID + R CQYCR++KCL GM V E QR ++R Sbjct: 97 SSQLNVVNSVSSSEDIKPL-PGLPGIGNMNYPSTSPGSLVKHICAICGDRS-SGKHYGVYSCEGCKGFFKRTIR----KDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAV---QEERQRSRER 219
BLAST of retinoid x vs. SwissProt
Match: gi|114152848|sp|Q94407.3|NHR48_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-48) HSP 1 Score: 75.485 bits (184), Expect = 1.490e-14 Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = 0 Query: 44 GNPNPSFPHVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQELKQEQL 156 GN S VC VCGD+A + ++ C SCKAFFRR N K K +C ++ C I++ SR+ CQ CR KC GM W++S+ E R +K++ +E ++ +L Sbjct: 87 GNEKESKRTANKVCRVCGDKAFSY-NFNVITCESCKAFFRRNAN----KEKEIRCPFNEQCEINMVSRRFCQRCRLTKCFAVGMKKEWIMSE---EARLEKKQRVEENRERRL 191
BLAST of retinoid x vs. nr
Match: gi|1325280017|ref|XP_023324670.1| (uncharacterized protein LOC111698547 [Eurytemora affinis]) HSP 1 Score: 149.443 bits (376), Expect = 1.904e-38 Identity = 62/98 (63.27%), Postives = 78/98 (79.59%), Query Frame = 0 Query: 54 KTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQEL 151 K +C +CGD A+RHVHYGG CCFSCKAFFRRAVNW + + FQC+ + C I+IK+RK CQ CRF+KC+ TGMNPSWVLSDD+R++RF+K + EL Sbjct: 38 KILCRICGDGAVRHVHYGGHCCFSCKAFFRRAVNWQTKNKRTFQCKFESGCEINIKNRKTCQSCRFQKCITTGMNPSWVLSDDQRKKRFKKYRETGEL 135
BLAST of retinoid x vs. nr
Match: gi|1325302227|ref|XP_023332665.1| (uncharacterized protein LOC111704608, partial [Eurytemora affinis]) HSP 1 Score: 110.923 bits (276), Expect = 3.202e-24 Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = 0 Query: 57 CLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQE 150 C VCGD+AI H+HYGG CC+SCKAFFRRAV S K K + C+ + +C + + +R+ CQ CRF+KC + GM +WVLSD++ EQRF K K K++ Sbjct: 874 CNVCGDKAIAHMHYGGICCYSCKAFFRRAV--QSGKDKKYLCKGEGHCPVSVHNRRGCQKCRFEKCQEIGMVSTWVLSDEQCEQRFGKSKLKRK 965
BLAST of retinoid x vs. nr
Match: gi|1325258266|ref|XP_023325470.1| (uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258271|ref|XP_023325479.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258277|ref|XP_023325484.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258282|ref|XP_023325492.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258289|ref|XP_023325500.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258292|ref|XP_023325508.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258296|ref|XP_023325515.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258300|ref|XP_023325523.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258306|ref|XP_023325531.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258311|ref|XP_023325539.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258315|ref|XP_023325547.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258319|ref|XP_023325554.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258329|ref|XP_023325561.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258334|ref|XP_023325570.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258338|ref|XP_023325578.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258342|ref|XP_023325585.1| uncharacterized protein LOC111699122 [Eurytemora affinis]) HSP 1 Score: 109.768 bits (273), Expect = 6.147e-24 Identity = 43/94 (45.74%), Postives = 67/94 (71.28%), Query Frame = 0 Query: 57 CLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQE 150 C +C + A +H+HYG CFSC+AFFRR++ + + CR QNC I++++RK CQ+CR++KCL GM +WVLS++ER++RF+K + + E Sbjct: 41 CKICNEPAAKHIHYGAMTCFSCRAFFRRSIQNKTANS--YTCRRSQNCEINLRTRKNCQFCRYQKCLSVGMKTNWVLSEEERQRRFRKVRERHE 132
BLAST of retinoid x vs. nr
Match: gi|657600356|gb|AID52839.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 108.612 bits (270), Expect = 1.665e-23 Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0 Query: 57 CLVCGDEAIRHVHYGGRCCFSCKAFFRRAVN---WHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQ 149 C VCG+ A RHVHYG CFSC+AFFRR++ W++ + CR C I +KSRK CQ CR+++CL GM P+WVLS++ER +RF+K + K+ Sbjct: 88 CRVCGEPAARHVHYGSVTCFSCRAFFRRSIQNKAWNN-----YSCRRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFRKTREKK 178
BLAST of retinoid x vs. nr
Match: gi|1253754465|ref|XP_022661244.1| (vitamin D3 receptor B-like isoform X1 [Varroa destructor] >gi|1253754467|ref|XP_022661245.1| vitamin D3 receptor B-like isoform X1 [Varroa destructor] >gi|1253754469|ref|XP_022661246.1| vitamin D3 receptor B-like isoform X1 [Varroa destructor]) HSP 1 Score: 108.612 bits (270), Expect = 1.761e-23 Identity = 69/161 (42.86%), Postives = 88/161 (54.66%), Query Frame = 0 Query: 6 ILDLCEADLNSLASSTHS-HGVNSPESEQSSSSLSPKRHG---NPNPSFPHVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQELKQEQLAFSGHG 162 ++DL EA L S S HG +P S++ +P HG +P P VC VCGD A + H+GG C SCKAFFRR+V + K FQC + C I I SRKCCQ+CRF+KC D GM WV+++ ER Q K++ E KQ LA G Sbjct: 159 LIDLREAKLLPFRSFPASPHGSRTPSP---STTTAPGHHGGSCSPLPMGKKPAKVCGVCGDRA-KSYHFGGISCDSCKAFFRRSVQNEAYKN--FQCPYEAKCDITIASRKCCQFCRFRKCNDIGMEKGWVMTELERSQLL---KSRLERKQRLLAVKTVG 310
BLAST of retinoid x vs. nr
Match: gi|1268053148|ref|XP_022698737.1| (vitamin D3 receptor B-like isoform X1 [Varroa jacobsoni]) HSP 1 Score: 108.612 bits (270), Expect = 1.883e-23 Identity = 69/161 (42.86%), Postives = 88/161 (54.66%), Query Frame = 0 Query: 6 ILDLCEADLNSLASSTHS-HGVNSPESEQSSSSLSPKRHG---NPNPSFPHVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQELKQEQLAFSGHG 162 ++DL EA L S S HG +P S++ +P HG +P P VC VCGD A + H+GG C SCKAFFRR+V + K FQC + C I I SRKCCQ+CRF+KC D GM WV+++ ER Q K++ E KQ LA G Sbjct: 159 LIDLREAKLLPFRSFPASPHGSRTPSP---STTTAPGHHGGSCSPLPMGKKPAKVCGVCGDRA-KSYHFGGISCDSCKAFFRRSVQNEAYKN--FQCPYEAKCDITIASRKCCQFCRFRKCNDIGMEKGWVMTELERSQLL---KSRLERKQRLLAVKTVG 310
BLAST of retinoid x vs. nr
Match: gi|1253754472|ref|XP_022661248.1| (vitamin D3 receptor A-like isoform X2 [Varroa destructor]) HSP 1 Score: 108.227 bits (269), Expect = 2.199e-23 Identity = 69/161 (42.86%), Postives = 88/161 (54.66%), Query Frame = 0 Query: 6 ILDLCEADLNSLASSTHS-HGVNSPESEQSSSSLSPKRHG---NPNPSFPHVKTVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQELKQEQLAFSGHG 162 ++DL EA L S S HG +P S++ +P HG +P P VC VCGD A + H+GG C SCKAFFRR+V + K FQC + C I I SRKCCQ+CRF+KC D GM WV+++ ER Q K++ E KQ LA G Sbjct: 159 LIDLREAKLLPFRSFPASPHGSRTPSP---STTTAPGHHGGSCSPLPMGKKPAKVCGVCGDRA-KSYHFGGISCDSCKAFFRRSVQNEAYKN--FQCPYEAKCDITIASRKCCQFCRFRKCNDIGMEKGWVMTELERSQLL---KSRLERKQRLLAVKTVG 310
BLAST of retinoid x vs. nr
Match: gi|657600344|gb|AID52833.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 104.375 bits (259), Expect = 4.560e-22 Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 0 Query: 55 TVCLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQK 144 T C +C ++A +H +YGG+ C SC+AFFRRAV S +IF C + C I++K+R+ CQ+CRFKKCL +GM +WVL D ER +RF K Sbjct: 190 TKCYICQEKAGKHNYYGGKACPSCRAFFRRAV--QSKYYEIFFCNKGEKCEINLKTRRSCQFCRFKKCLASGMRVAWVLPDGERNRRFNK 277
BLAST of retinoid x vs. nr
Match: gi|1325316701|ref|XP_023340074.1| (uncharacterized protein LOC111710243 [Eurytemora affinis]) HSP 1 Score: 102.449 bits (254), Expect = 1.473e-21 Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 0 Query: 46 PNPSFPHVKTV-CLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQN-CHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKR 145 P+P + T+ C VC D AI H HYGG CC+SCKAFFRR VN K ++CRN N C + + +R+ CQ CR++KC+ GM P VLSD++ +RF R Sbjct: 262 PSPESANKSTIDCPVCKDVAIAHFHYGGMCCYSCKAFFRRVVNTS--KANKYKCRNGSNLCDVSLGNRRSCQACRYRKCVSAGMKPGLVLSDEQCTRRFGPR 361
BLAST of retinoid x vs. nr
Match: gi|657600360|gb|AID52841.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 101.293 bits (251), Expect = 4.407e-21 Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 0 Query: 57 CLVCGDEAIRHVHYGGRCCFSCKAFFRRAVNWHSLKIKIFQCRNDQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQKRKAKQ 149 C VCGD A H HYGG CFSC+AFFRR+V K + C + NC + +RK CQ CRF KC++ GM SWVLSD+E+ +R +K+++++ Sbjct: 122 CHVCGDRAPNHCHYGGIACFSCRAFFRRSVP----KYDTYTCSSSSNCVVTPATRKNCQKCRFDKCVEAGMKASWVLSDEEKLERLEKKRSRK 210 The following BLAST results are available for this feature:
BLAST of retinoid x vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 24
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BLAST of retinoid x vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of retinoid x vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold48_size466083:147482..156331- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold48_size466083-snap-gene-1.23 ID=maker-scaffold48_size466083-snap-gene-1.23|Name=retinoid x|organism=Tigriopus kingsejongensis|type=gene|length=8850bp|location=Sequence derived from alignment at scaffold48_size466083:147482..156331- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'retinoid x' has the following synonyms
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