39s ribosomal protein mitochondrial, maker-scaffold50_size457468-snap-gene-1.17 (gene) Tigriopus kingsejongensis

Overview


Name	39s ribosomal protein mitochondrial
Unique Name	maker-scaffold50_size457468-snap-gene-1.17
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|21263796|sp|Q9Z2Q5.2|RM40_MOUSE (RecName: Full=39S ribosomal protein L40, mitochondrial; Short=L40mt; Short=MRP-L40; AltName: Full=Nuclear localization signal-containing protein deleted in velocardiofacial syndrome homolog; Flags: Precursor)

HSP 1 Score: 69.3218 bits (168), Expect = 3.102e-13
Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = 0

Query:   51 PSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSLTVTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDY-IQDGEYKDTSKQFV 206
            P +KK+++DP  D+  +D    RL K ++K+++  +   PI +  I P    + S +      + E  E R LL K W  F  +    E     S++ +QQ+ALEEL+  S  LY EAI+ D  L PF  +GP YT  + +Y   +G Y D +K + 
Sbjct:   49 PLRKKKKVDPRKDQAAKD----RLKKRIRKLEKASQELIPIEDF-ITPVRFLDKSRQRPQEEHSPEESERRALLLKRWALFKQQEHEMERDAIRSMLEAQQEALEELKLESAELYAEAIKRDTSLFPFEKEGPHYTPPISNYQAPEGRYNDITKVYT 200

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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|124028628|sp|P83565.2|RM40_RAT (RecName: Full=39S ribosomal protein L40, mitochondrial; Short=L40mt; Short=MRP-L40; Flags: Precursor)

HSP 1 Score: 65.4698 bits (158), Expect = 7.329e-12
Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 0

Query:   51 PSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSLTVTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDY-IQDGEYKDTSKQFV 206
            P +KK+++DP  D+  +D    RL K ++K++R  +   PI +  I P    + S +      + E  E R LL K W  +  +    E     +++ +QQ+ALE+L+  S  LY EAI+ D  L PF  +GP YT  + +Y   +G Y D +K + 
Sbjct:   49 PLRKKKKVDPRKDQAAKD----RLKKRIRKLERASQELVPIEDF-ITPVRFLDKSRQRPQEEHSFEESERRALLLKRWALYKQQEHEMERDAIRAMLEAQQEALEQLKLESTELYAEAIKRDTSLFPFEKEGPHYTPPVPNYQAPEGRYNDITKVYT 200

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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|21263795|sp|Q9NQ50.1|RM40_HUMAN (RecName: Full=39S ribosomal protein L40, mitochondrial; Short=L40mt; Short=MRP-L40; AltName: Full=Mitochondrial large ribosomal subunit protein mL40; AltName: Full=Nuclear localization signal-containing protein deleted in velocardiofacial syndrome; AltName: Full=Up-regulated in metastasis; Flags: Precursor)

HSP 1 Score: 53.5286 bits (127), Expect = 1.283e-7
Identity = 41/137 (29.93%), Postives = 72/137 (52.55%), Query Frame = 0

Query:   71 RGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSLTVTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDY-IQDGEYKDTSKQFV 206
            + RL + ++K+++  +   PI +  I P    + +     + +T E  E R LL K+W+ +  +    E     +++ +QQ+ALEEL+  S  L+ EAI+ D  L PF  +GP YT  + +Y   +G Y D +K + 
Sbjct:   65 KERLKRKIRKLEKATQELIPIEDF-ITPLKFLDKARERPQVELTFEETERRALLLKKWSLYKQQERKMERDTIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVYT 200

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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1325312813|ref|XP_023338053.1| (39S ribosomal protein L40, mitochondrial-like [Eurytemora affinis])

HSP 1 Score: 159.844 bits (403), Expect = 3.629e-45
Identity = 85/208 (40.87%), Postives = 133/208 (63.94%), Query Frame = 0

Query:   36 LAPAWLHTSA--------AWMSLPSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSLTVTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDYIQDGEYKDTSKQFVVKYGDMKQFMGQLLDRPRKKKKKP--EDD 233
            L  +  HTS          W    +KKKRR DP   K+++D+RR RLAKAL+KM++K+R P+P++ELE+   +  E   R R+L V +++REER    K+W  +A  R   EI + D+ I++QQ+AL++LR  SL+LY  A Q D  L+PF  +GP  +  ++DYIQDG++KD ++++ V Y D + F+ +L+ + R++KK+   EDD
Sbjct:   24 LPVSAFHTSTINNFKLTDVWSGGVTKKKRRTDPGSTKVKDDRRRKRLAKALRKMEKKERQPKPVIELEVPQVLFSESKLRTRNLQVPEDIREERHYFFKDWALYAQNRHRNEIYELDTKILAQQEALDQLRMESLDLYLAACQFDPDLIPFTARGPTLSPPIKDYIQDGDFKDITREYKVVYEDTEAFLKKLVTKVRRRKKRSSEEDD 231

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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|759048898|ref|XP_011333501.1| (PREDICTED: 39S ribosomal protein L40, mitochondrial [Ooceraea biroi] >gi|607363634|gb|EZA57866.1| 39S ribosomal protein L40, mitochondrial [Ooceraea biroi])

HSP 1 Score: 132.88 bits (333), Expect = 6.783e-35
Identity = 73/171 (42.69%), Postives = 114/171 (66.67%), Query Frame = 0

Query:   37 APAWLHTSAAWMSLPSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSL-TVTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDYIQ-DGEYKDTSKQF 205
            +P +   S A +  P KKK+R+DPM+ K RE++R+ RL K +K++++  +  +PI E+E+   ++ E   R R   ++++E  E RI+L KEWTR+  R++L++ +  DS++ SQQKAL+ELR  S  LY EAIQ DL LLP   KGPV T  +++Y   DGEY +T+++F
Sbjct:   29 SPLYFRVSDALLGEPLKKKKRIDPMIIKAREERRKKRLEKQIKRLEKYVKQLKPIDEVEVPLKLMDEKEQRLRKPPSLSEEEMESRIILQKEWTRYKYRQYLEDAQAIDSILYSQQKALDELRAESEELYQEAIQMDLALLPHTTKGPVKTPVIKNYDSPDGEYINTTRKF 199

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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1279736520|ref|XP_022913089.1| (39S ribosomal protein L40, mitochondrial [Onthophagus taurus])

HSP 1 Score: 132.494 bits (332), Expect = 6.802e-35
Identity = 75/168 (44.64%), Postives = 111/168 (66.07%), Query Frame = 0

Query:   40 WLHTSAAWMSLPSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHR-SLTVTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDY-IQDGEYKDTSKQF 205
            +LHT+ A  + P KKK+R+DP V K R+D+++ R+ K ++K+++  R  +PI ELEI   I+     R+R S  +T E  EERILL K+W++F  + ++K++K  D +  SQQKAL+ELR  S  LY EAIQ DL L+P+   GPV T  +E Y   DG+Y+D SK++
Sbjct:   32 FLHTTPALCAEPLKKKKRLDPAVIKARDDRKKKRIEKQIRKLEKNARQLKPIEELEIPMVIIDHKKERYRKSPALTAETLEERILLEKQWSQFKKQEYVKDLKMLDRIAYSQQKALDELRKESEELYQEAIQPDLQLIPYGFIGPVETPPIEGYNAPDGDYQDVSKKW 199

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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1070180188|ref|XP_018348857.1| (PREDICTED: 39S ribosomal protein L40, mitochondrial [Trachymyrmex septentrionalis] >gi|1009415690|gb|KYN34492.1| 39S ribosomal protein L40, mitochondrial [Trachymyrmex septentrionalis])

HSP 1 Score: 131.724 bits (330), Expect = 1.587e-34
Identity = 74/170 (43.53%), Postives = 112/170 (65.88%), Query Frame = 0

Query:   38 PAWLHTSAAWMSLPSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSLT-VTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDYIQ-DGEYKDTSKQF 205
            P +   S+  +  P KKK+++DP + K RE+KRR +L K ++KM+++ +  +PI ELE+   +++E   R R L  +++E  E RILL K+W R+  ++ L  I+  DS+  SQQKAL+ELR  S +LY EAIQ DLGLLP   KGP+ T  +E+Y   DGEY +T+++F
Sbjct:   30 PLYFRVSSVLLGEPLKKKKKLDPAIIKAREEKRRKKLEKQIRKMEKQSKQLKPISELEVPSKLIEEREQRLRKLPPISEEEIESRILLQKDWNRYKSQQHLANIQAIDSIFYSQQKALDELRAESEDLYQEAIQLDLGLLPHTAKGPLKTPPIENYDSPDGEYTNTTRKF 199

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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|951517010|ref|XP_014485753.1| (PREDICTED: 39S ribosomal protein L40, mitochondrial [Dinoponera quadriceps])

HSP 1 Score: 128.257 bits (321), Expect = 3.588e-33
Identity = 72/172 (41.86%), Postives = 116/172 (67.44%), Query Frame = 0

Query:   37 APAWLHTSAAWMSLPSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSLT-VTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDYIQ-DGEYKDTSKQFV 206
            +P +   S+A +  P KKK++MDPM+ KMR +K++ +L K ++++++  +  +PI E+E+  +++ E   R R+L  ++ E  E RILL KEW+R+   ++L +I+  DS++ SQQKAL+ELR  S  LY EAIQ DL LLP+  KGP  T  +E+Y   DGEY +T++++V
Sbjct:   29 SPLYFRVSSALLGEPLKKKKKMDPMIIKMRLEKKKKKLEKQIRRLEKVAKQLKPISEMEVPLNLIDEKEQRLRNLPPISAEEMESRILLQKEWSRYKNSQYLADIQIIDSMLYSQQKALDELRAESEELYQEAIQVDLALLPYVTKGPSKTPPIENYDNPDGEYVNTTRRYV 200

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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|746867817|ref|XP_011065018.1| (PREDICTED: 39S ribosomal protein L40, mitochondrial [Acromyrmex echinatior] >gi|332018279|gb|EGI58884.1| 39S ribosomal protein L40, mitochondrial [Acromyrmex echinatior])

HSP 1 Score: 127.487 bits (319), Expect = 8.295e-33
Identity = 72/170 (42.35%), Postives = 113/170 (66.47%), Query Frame = 0

Query:   38 PAWLHTSAAWMSLPSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSL-TVTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDYIQ-DGEYKDTSKQF 205
            P +   S+  +  P KKK+R+DP + + RE++RR +L K ++++Q+  +  +PI ELE+   +++E   R R L ++++E  E +ILL KEW R+  ++ L  I+  DS+  SQQKAL+ELR  S +LY EA+Q DLGLLP  VKGP+ T  +E+Y   DGEY +T+++F
Sbjct:   30 PLYFRVSSVLLGEPLKKKKRLDPAIIRAREERRRRKLEKQIRRLQKLSKQLKPISELEVPSKLIEEKEQRLRKLPSISEEEMESKILLQKEWNRYKSQQHLANIQAIDSIFYSQQKALDELRAESEDLYQEAVQPDLGLLPHTVKGPLKTPPIENYNSPDGEYTNTTRKF 199

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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|749757666|ref|XP_011141110.1| (PREDICTED: 39S ribosomal protein L40, mitochondrial [Harpegnathos saltator])

HSP 1 Score: 125.946 bits (315), Expect = 2.376e-32
Identity = 66/171 (38.60%), Postives = 111/171 (64.91%), Query Frame = 0

Query:   37 APAWLHTSAAWMSLPSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSLT-VTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDYIQ-DGEYKDTSKQF 205
            +P +   S+A +  P K+K+R+DP + K R D+++ ++ K ++++++  +  +PI E+EI   +V E   R R+ + ++ E  E R+LL KEW R+   ++L + +  DS++ SQQKAL+ELR  S  LY EAIQ DL  LP+ VKGP+ T  +E+Y   DGEY +T++++
Sbjct:   29 SPLYFRVSSALLGEPLKRKKRLDPAIIKARLDRKKKKIEKQIRRLEKVAKQLKPISEIEIPFKLVDERKQRLRNSSPLSAEEVESRVLLQKEWNRYKNNQYLADFQTIDSMLYSQQKALDELRAESEELYQEAIQVDLAFLPYVVKGPLKTPPIENYNSPDGEYVNTTRKY 199

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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1069664710|ref|XP_018301751.1| (PREDICTED: 39S ribosomal protein L40, mitochondrial [Trachymyrmex zeteki])

HSP 1 Score: 125.946 bits (315), Expect = 2.508e-32
Identity = 78/195 (40.00%), Postives = 122/195 (62.56%), Query Frame = 0

Query:   16 SFLMALWHGLLRGLTGPRPGLA---PAWLHTSAAWMSLPSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSLT-VTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDYIQ-DGEYKDTSKQF 205
            + L AL    +R + G R   A   P +   S+  +  P KKK+R+DP + + RED+RR +L K ++++Q+  +  +PI E+E+   +++E   R R L  +++E  + RILL K+W R+  ++ L  I+  DS+  SQQKAL+ELR  S +LY EAIQ DLGLLP+  KGP+ T  +E+Y   DGEY +T+++F
Sbjct:    7 NLLPALSRLSVRAIPGVRNISACTDPLYFRVSSVLLGEPLKKKKRIDPAIIRAREDRRRRKLEKQIRRLQKLSKQLKPISEIEVPSKLIEEKEQRLRKLPPISEEEMDSRILLQKDWNRYKTKQHLANIQTIDSIFYSQQKALDELRAESEDLYQEAIQLDLGLLPYTAKGPLKTPPIENYDNPDGEYTNTTRKF 201

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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1012987104|gb|KYQ60516.1| (39S ribosomal protein L40, mitochondrial [Trachymyrmex zeteki])

HSP 1 Score: 125.946 bits (315), Expect = 2.618e-32
Identity = 78/195 (40.00%), Postives = 122/195 (62.56%), Query Frame = 0

Query:   16 SFLMALWHGLLRGLTGPRPGLA---PAWLHTSAAWMSLPSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSLT-VTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDYIQ-DGEYKDTSKQF 205
            + L AL    +R + G R   A   P +   S+  +  P KKK+R+DP + + RED+RR +L K ++++Q+  +  +PI E+E+   +++E   R R L  +++E  + RILL K+W R+  ++ L  I+  DS+  SQQKAL+ELR  S +LY EAIQ DLGLLP+  KGP+ T  +E+Y   DGEY +T+++F
Sbjct:    5 NLLPALSRLSVRAIPGVRNISACTDPLYFRVSSVLLGEPLKKKKRIDPAIIRAREDRRRRKLEKQIRRLQKLSKQLKPISEIEVPSKLIEEKEQRLRKLPPISEEEMDSRILLQKDWNRYKTKQHLANIQTIDSIFYSQQKALDELRAESEDLYQEAIQLDLGLLPYTAKGPLKTPPIENYDNPDGEYTNTTRKF 199

[Close]

BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|861648986|gb|KMQ96606.1| (39s ribosomal protein mitochondrial [Lasius niger])

HSP 1 Score: 125.176 bits (313), Expect = 5.038e-32
Identity = 72/170 (42.35%), Postives = 113/170 (66.47%), Query Frame = 0

Query:   38 PAWLHTSAAWMSLPSKKKRRMDPMVDKMREDKRRGRLAKALKKMQRKDRIPRPIVELEIQPHIVQELSTRHRSLT-VTDEVREERILLGKEWTRFAGRRFLKEIKQYDSVIISQQKALEELRGLSLNLYFEAIQSDLGLLPFRVKGPVYTSRLEDYIQ-DGEYKDTSKQF 205
            P +   S+A +  P KKK+R+DP + + RE++R+ +L K +++++R  +  +PI E+E+   ++ E + R R L  +++E  E RILL KEWTR+  R+ L  I+  DSV+ SQQ+AL+EL+  S  LY EAIQ DLGLLP   KGP+ T  +E+Y   DGEY +T++++
Sbjct:   30 PLYFRVSSALLGEPLKKKKRLDPAIIRAREERRKRKLEKLIRRLERNTKQLKPIAEIEVPFKLIDEKTQRLRQLPPLSEEEVESRILLQKEWTRYKTRQHLTNIQTIDSVLYSQQRALDELKAESEELYQEAIQMDLGLLPHTAKGPLKTPAIENYDSPDGEYTNTTRKY 199

The following BLAST results are available for this feature:

BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
BLAST of 39s ribosomal protein mitochondrial vs. nr

BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 3


Match Name	E-value	Identity	Description
gi\|21263796\|sp\|Q9Z2Q5.2\|RM40_MOUSE	3.102e-13	33.12	RecName: Full=39S ribosomal protein L40, mitochond...	[more]
gi\|124028628\|sp\|P83565.2\|RM40_RAT	7.329e-12	31.85	RecName: Full=39S ribosomal protein L40, mitochond...	[more]
gi\|21263795\|sp\|Q9NQ50.1\|RM40_HUMAN	1.283e-7	29.93	RecName: Full=39S ribosomal protein L40, mitochond...	[more]

BLAST of 39s ribosomal protein mitochondrial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1325312813\|ref\|XP_023338053.1\|	3.629e-45	40.87	39S ribosomal protein L40, mitochondrial-like [Eur...	[more]
gi\|759048898\|ref\|XP_011333501.1\|	6.783e-35	42.69	PREDICTED: 39S ribosomal protein L40, mitochondria...	[more]
gi\|1279736520\|ref\|XP_022913089.1\|	6.802e-35	44.64	39S ribosomal protein L40, mitochondrial [Onthopha...	[more]
gi\|1070180188\|ref\|XP_018348857.1\|	1.587e-34	43.53	PREDICTED: 39S ribosomal protein L40, mitochondria...	[more]
gi\|951517010\|ref\|XP_014485753.1\|	3.588e-33	41.86	PREDICTED: 39S ribosomal protein L40, mitochondria...	[more]
gi\|746867817\|ref\|XP_011065018.1\|	8.295e-33	42.35	PREDICTED: 39S ribosomal protein L40, mitochondria...	[more]
gi\|749757666\|ref\|XP_011141110.1\|	2.376e-32	38.60	PREDICTED: 39S ribosomal protein L40, mitochondria...	[more]
gi\|1069664710\|ref\|XP_018301751.1\|	2.508e-32	40.00	PREDICTED: 39S ribosomal protein L40, mitochondria...	[more]
gi\|1012987104\|gb\|KYQ60516.1\|	2.618e-32	40.00	39S ribosomal protein L40, mitochondrial [Trachymy...	[more]
gi\|861648986\|gb\|KMQ96606.1\|	5.038e-32	42.35	39s ribosomal protein mitochondrial [Lasius niger]	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold50_size457468	supercontig	scaffold50_size457468:86069..91749 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold50_size457468-snap-gene-1.17-mRNA-1	maker-scaffold50_size457468-snap-gene-1.17-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold50_size457468:86069..91749-

gene from alignment at scaffold50_size457468:86069..91749-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold50_size457468-snap-gene-1.17 ID=maker-scaffold50_size457468-snap-gene-1.17|Name=39s ribosomal protein mitochondrial|organism=Tigriopus kingsejongensis|type=gene|length=5681bp|location=Sequence derived from alignment at scaffold50_size457468:86069..91749- (Tigriopus kingsejongensis)
ATGTGTCCCGTGTTCTGTGGGCGGGGCAACTCTCAATGCACGGGGTAGAG
CATGTCTAATTAATTGTTTATTCCAAAAATCAAATAGCAATTAATTTTTC
GCTTTAATTAATAAATTTTAAAAATAAAAATTTATAAAATTTTATAAAAA
TTAATAAATTTTTAATCAATAAATTGATGATTCAACCAGTTTTATTTTGC
TTAATGCAAGACCTCAAAAAACACAGATTTTCAATGGAAAGGTCATTTAA
AAAAGTTCCAAGCTTTGTAGTGAACAGACCTACGGCATTCAACCTTCTCT
CAGCCTCAAATGACGCCGGCGGGATTGTTATCAGGGCCTTGTACAGCTTC
TCCAGGGTGCTGGGTCTTTCTCCAGTGCTTTCCAACAAGGTCATCTCCTT
TTTGACTAGCTTTATAACGTCATTGGATGACGAATTAGTGGCTTAACCTC
TTCATAGTCTCTCCATTGCCGTTGTCATTGCCACCACCTGTTTCAGGATC
AAAAATATGCTCAGGATTATCAGCCGGTGCGTATTTCAGTTTCTCCTCGT
TGTTTCTTGTTCTTTTGTTGTTTCTTCATGGGAAGTAGGAGCTTAACCGG
TTCGAAATTTTCCATCGTTCAAGTTCTTGAAAGAGGACTTTAAGCGCGGG
AAAAATTGAATTTCCGCTCACATTACAAGTCATGCAAGTTTGATTTTAAT
TGGTTTTATTTGAACATCAATTCAAATAATTAAAAGATAAACTGAAAATC
AATTAATTGATTAATCAATCAATTCATGCTCTAGCACGGGGTTTCTATTA
GTTCTGTGCACATTTACTGATTTGTATAGCCTTGTTAACATTTATTATGA
TATTTCTCCCTTATTGTTTTTTTTTCTGGCACAGTTTACCGTATAGTAGG
TTCTTACAACGTTTTGTTTTTCGTTACTACTAACATGTGTATATACTTAA
AAATGGCTAGCATTCGTTTGCTAAGTGTTGACTCTCGGGCATATACCAAA
TTTTATCAAGCAGGAAATAAACGATTACCCACACACACACACCGGGTTGA
GCCTGGGCCTGCCGCCGATTCTGACCTCAGGTGCGCCCAAACCGCCAACC
TGATGATCAGCTGGCCCTCAAATGTCAACAAAGAGCCCGAAGAATTGACT
CACTGGACCTGATTGACTCACTGGACCTGATTGACTCACTGGACCTGATT
GACTCACTGGACCTGGCTCTAACTTGACCCAGAGGGGTACACGATCTCCT
CTAGTGTCTCTAATTTGACCTGGGCATTGGCTGCACCTGAGTCCGGACTT
AGTTCCCAGTTCGTTCCTCATGGCGCTTTGGCACGGCCTCCTGCGGGGCC
TCACGGGACCTCGGCCCGGCCTCGCGCCTGCCTGGCTGCACACGAGTGCG
GCTTGGATGTCGTTGCCCTCCAAGAAGAAGAGGCGCATGGATCCCATGGT
CGACAAGATGCGCGAGGACAAGCGACGGGGTCGATTGGCCAAAGCCCTCA
AGAAGATGCAGCGCAAGGATCGGATTCCCCGACCCATTGTCGAGCTCGAA
ATCCAGCCTCACATCGTCCAAGAGCTGTCGACCCGACACCGCTCGCTCAC
GGTCACGGACGAGGTCAGGGAAGAGCGCATCCTCCTAGGTAGGTCCTGAG
GCGCCATTTTGAATTGTCCGGCGGCAACCTCAGGCTGGCTGGCCCTGGGA
GAGGCCTGGGAGAGGCCTGGGCTAGTAGATACTGTAGACCGGGATCGGGG
GCACCGATTACCCCGGAGCTGTGTGGAGCAAATATGGGGTAATGTTCTAC
TTGGGCCCCAAGAGGTGGCGTGGGATATTTTCTCCCATTGCGCAGTGAGC
GTGACCACTTAGCGTGGCCTCAAATCTAGCCACCTGCCCCAGCCATTTTG
AACTTTGAACATCCTAGTGCCTCTTCGTAGGTCTCTTCTTTATTCTCGTC
CCAAGAACGAGGCGATTGGTGAAAGGCTAGATTGGCCAGTGACTAAGATT
GGTCCAGATCACGCACTCAAACTCAGTCATCTGGACATAGATGGGAGGAA
AATGTCTGGGGGTCTGGCATTACTGGCAGAAAGTGCTCATTGAGTTCAAA
GTTTAACCGGCTGAGGATGAAGGCTGGGGTGGGATTGACTCATTCAATTC
GTGATCATGGTAATCACTGGGTCAGATGTTCACCAACTATAGGCCAACGC
CATCAATGAAGAATTGGCCACGGGAATGGCCCAGATTTGGACGGAGGTGA
AGGGGTAGATGGCAATCTCAGACACTGCTCAATGGGGTGGCATCCTGAGA
ATACTGTGATGCCCCAACCCGGGCCATCCCGACTCGCCTCAACGGAACAC
GGGCGGGCGTTGAGATCCGGAAATCCTACGAATAGGGTATAGTCATTCGG
CGTGCCGTTAGCCCAAGGGAAACGAGACCTATTTCAGCCCATTGAGCCCA
TGCGGGCGATCACCTCCACCTCCAGGACGGATCTGCCTAGCCATCAACTC
CGTTTGAGCGACCTGAATTCCCGTAATCCAGCGTCAGACGTTCATAAACC
CGCCACCCTAGCCGGAACCCTGAGCGACGACCATACAGATCAAGCTAAAG
TCCCTATATAACCAAAGTCCCGACACTCCCTTTGGTTGGGGGCCGTTGGT
CAGCAGACTCGCACGGGGACAGCCAATCATTGAGAGGAGAAGGGGGATTT
TGAGCGTGCTATGCTGCTGTGAGCCAATCGTGTTGAGACCGCTCATCAGC
TCCATGAACAACTGGTTTGAGTGGTTGGACTTTGGATATACAGGGACTTG
AGATCAAGCCAATCGGCCAACTGTTCATGATCGTAGCCTGACACCGAGAC
CCCGTAATAATTGGCCCGCGAATATCATCACATCTACCTGGATTTCCAAT
TACCCTTCCCATGTCAATCTGCTATGGGTCTTTGAGAACTCTAGCCCAAG
TTGTATTGGCTAATGATTGGTTACAAGTCACCCAAACTTGGCGCTTGATA
GTGTCCGCGTCAATTCAAAGTGAGACCAGCTGCGTGCTGGCTTTACGCAT
TGGGTGCCCGGGACATGTGAGCCCAACTCGACTTAAGCTCTGGGCTGCCC
CATGCCCAAGGCAGGGGTCGCACGGGGCCCTGTCTAACATGTACATAGCT
TGGTAATACGAAAAAATGGAAGTAGAAGACCGGTTAGCCCCCAAATATGA
ATCAGTGCCCAATTAAGAGACGTGCAAACGCTCCCAATATCCAAGGTATG
ACGTGTTTAAAATAAAAGGAATCACGGTGACCCTTGGCCACAGTGAAAAT
TCACTTCCCTGAACCGATGCGCTTATTCTTATTGAATTCCGGTCAAAACT
ATATTTGTCTGGCCGAGCTAGAATGCTAGAAATCCAACTCAATTGGTCAA
GTGTGGTTTTTTTTTTTTTTTTCACGATTGACTCTACGGAGGTATTTACG
AAAAATGAGGCAACCCCCTATTTCACAGGATGGCTTACGGGGGATCAGCC
CTTGATAAGCCTCGAGGCATGTGGGTCAAGTAATTATCAAATTGGTCGAC
GTCTTCTACGGCTTGTTCAAAGTACTGATAACAGAGATTTTCGTACATGC
CATACATCTTACATGCTCTTACATTACATCTCTGTTACTTTTGACAGGCA
TTAGTGACTCTTCACGAACCCTACAGCTTATTGCGTTGCTTTTCGCTTAC
TATCACGGGAAAACGTTGGTGTTGGTTCTTGTGAAGTCAGCAAGAACTTA
TGTAAAAATGAGCGTAACTTCAGCGAATTTCAAGAAATAGGGAACTGGGA
AACCGCGACCAGGTAAAAATAAATCAATTGAGAAATCGCTGGCAATTGTT
GTCGAACATTTGTTTTTTCCAAATAGAGCAAAAAAAGCAGAAAGGGCAAA
CAAGGAAAAAGTCTTGGTTAGCGAAAAGGTGTGACAAAAAACGAATAATA
AGTTGTGAAAAGTGAAGGGCGAACATTGTGATAAAACGGCAATTAAGTTT
ATTTGCCCAAAAGGTCGAACTTGGCCAAAACGTAAGTCCCATTTGATCAC
ACCTTTTTCCGCCCCCCATCTCATTACTATTGCCGTTCCTGGGTTCAATT
ACCATGAACAGGGCGATTTTTTATCTAATCACTTAAGTTTTAGGACCAAG
TAAGGACTGTATAGATTGAACTCATTGTCGTACTTGAGGTATGCCATAGG
TCGGTCAGCCTAACATTTTATTGGCAACATTTACTTCAGATGCTTAGCTT
AAGACTCAATTTGTGTGGCCGCAATCGAATCATTCTGATGATTTGCATTG
GAAAGTGAAAAGCAATTGATGAGACTGCCAAAATAATCCCAAAAGATGTC
TTCCCAACTCAGTACAATGTATAATTAGCGATTAAGTCGCTCACTGAAGC
CATTTTGATCCCAAAATTAGCAAATTGACTTTCCTTTTCCTTCATGTGTT
TTGAGCACAACCAAGGTGATAATACCGGTACGATCATGTAAAAGTTTAGC
CTTATCCCGTGATTGCGCACTTTTGGGAACAGAAATGGACAGAGGGCGCC
ACGGGTGGTGAGTAAGCCTCCTACTCCGTTTATTTAGGGCACTAGTTTTG
TTCAAGAGTATAGTAGGGTATTAGTTTTCCTCACTAACCCTACCTATTGC
CCTCGTGGGTACACTCTTATGTGCGGGTACACAGATTCTAGATAAATTTA
TCATCCTAGACTAATCAATCTCAAGAATAAAGTCACCCGAACCCTTTTTT
AACAGATTTAATTAAATGCCAAATGCTACTCGCTGAATGCCAAATATGAA
TTATTGATTTGTACTTTACGCTAACATCAATCATATTTGTCTTCCATGCT
AAAGCGTGCAATGCTGGCTATCGTGTGTAGATCGGTAGAGTGACTAGTGT
GTTTTTATTCAATTAGAGGCAAGCGAAGTGTTTAAGCACGCTCCATGCAC
CCGAAAGACTGGCTGTGAAATCTTTTGCAGTAAATAAATAAGTAGGTGTC
CCAACTATTAGGGGATTTTGAAACAAATTTGCTTCGCCAACATTAGGCTT
GACTGGGATGCATTTTTAAGCCTGAATGAATACCCTCTGCAGTCACCATG
ACTCATAATTTCTTCTTGGCAATTTATCATGGGAGCGATGACAAAAAATG
ACGAGGCTCTCGTGTTGGAATGCTTTCAGGCAAGGAATGGACACGCTTTG
CTGGAAGACGCTTCTTGAAGGAGATCAAGCAGTATGACTCGGTGATCATC
AGCCAGCAAAAGGCCTTGGAAGAGCTCCGGGGCCTCTCGCTCAATCTCTA
CTTCGAGGCCATTCAAAGTGACCTCGGATTACTCCCCTTCCGGGTGAAAG
GACCGGTGTACACTTCCCGCTTGGAGGACTACATCCAGGATGGAGAGTAT
AAAGACACATCCAAGCAGTTCGTGGTCAAATATGGCGATATGAAACAGTT
CATGGGCCAGCTTTTGGATCGGCCCCGGAAAAAGAAGAAAAAACCCGAGG
ATGATATTTGAATTTAGTCCGTTTAAATATTCAACCACTGATCGAAATAT
ACTACAGTATCTCGTTCGTAGTAGTGGGGCCTTTATGTACAGTATTCATT
TTAAATCTTGCATTGTTTCCGACATGTCTCGCTTGCAAGTTGATGAGATG
GAACCTCTTGACTTTGTCAATGTCTGTGTTG

Synonyms

The feature '39s ribosomal protein mitochondrial' has the following synonyms


Synonym
Tk03207

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