exosome complex component rrp43, maker-scaffold552_size138156-snap-gene-0.29 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of exosome complex component rrp43 vs. L. salmonis genes
Match: EMLSAG00000008750 (supercontig:LSalAtl2s:LSalAtl2s543:201996:206114:1 gene:EMLSAG00000008750 transcript:EMLSAT00000008750 description:"maker-LSalAtl2s543-augustus-gene-1.61") HSP 1 Score: 233.417 bits (594), Expect = 1.707e-70 Identity = 123/276 (44.57%), Postives = 182/276 (65.94%), Query Frame = 0 Query: 12 FKGIQPLEYFRHHIENGSRPDGRSN-LTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQ-FKP-GPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFE-DQIMVDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 F+ +QP EYF H++ G R DGR L L P+S S +I +ADGS+I+K+G TIV+CG+ L++A P P++GF+VP+VD P +C+P+ +K G + QV SKF+ +VL NSG+++L LCI +Y+WVL +D CLNHDGNV D + AL+ AL ++ +P+V E+ED+ ++V + S+L L+ P++ TMAI E D+I+VDPTEEEES A +T+VLDA ++ +F K GG +S L + T LA++ T+ KLI+K Sbjct: 689 FRRVQPKEYFNQHVDKGLRLDGREGGLDSLXPLSXSXXSIXTADGSSIIKKGNTIVICGITLQIATPTEEHPNRGFIVPHVDLPTMCNPRNYKSRGQISDEIQVLSKFVMDVLENSGVINLDTLCIVPGEYAWVLKIDFSCLNHDGNVKDAIITALILALKEVKMPKVETFEEEDS---DKTLIKVVKNKYSQLQLQCIPVSVTMAIMEGDKILVDPTEEEESFAPDSITLVLDAE-DEMCYFAKLGGNPISDELLDKITNLARQQALTVRKLINK 960
BLAST of exosome complex component rrp43 vs. L. salmonis genes
Match: EMLSAG00000000002 (supercontig:LSalAtl2s:LSalAtl2s1000:41727:44138:1 gene:EMLSAG00000000002 transcript:EMLSAT00000000002 description:"maker-LSalAtl2s1000-snap-gene-0.12") HSP 1 Score: 73.1738 bits (178), Expect = 2.582e-16 Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = 0 Query: 39 ELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVP---------NVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAAL 168 +L +SIS G I + DGS+IVK+ IVVCG L++ P P++G ++ N+ L ++ P F+ +VL NS +++L+ L I +YS VL ++ C NH G+V D + L+ AL Sbjct: 6 DLLALSISSGFITTVDGSSIVKKENNIVVCGTTLQITSPREEYPNRGIIIYLLCTNLGTINLLDKSLIKSRYSP-----------NFVMDVLKNSVVINLESLYIVSREYSRVLEINFHCPNHGGSVKDAIITPLLLAL 133
BLAST of exosome complex component rrp43 vs. SwissProt
Match: gi|259645403|sp|C4KHE3.1|RRP42_SULIK (RecName: Full=Exosome complex component Rrp42 >gi|259645404|sp|C3MQ47.1|RRP42_SULIL RecName: Full=Exosome complex component Rrp42 >gi|259645407|sp|C3NED0.1|RRP42_SULIY RecName: Full=Exosome complex component Rrp42) HSP 1 Score: 131.339 bits (329), Expect = 2.917e-35 Identity = 85/249 (34.14%), Postives = 134/249 (53.82%), Query Frame = 0 Query: 25 IENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIMVDPTEEEESLAHAVVTVVLDAATGDL--VHFHKPGGAALSRHKLQECTALAK 271 E G+R DGR LT+ RP+SI+ ADGSA+VK G T+V+ G KLE+ P+ + P+QG ++ NV+ PL + F+PGPP E A ++ + L +S +DL L I+ K W + +D+ L++ GNVLD A VAAL + + +V ++D+ G +V N KL L + ++A + ++VDP +EES+ V+ + T DL V K G ++S + + A+ Sbjct: 23 FEKGTRQDGRK-LTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKV----EQDS---NGFRVNKNEVV-GKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSF---SYTPDLKIVGIQKSGKGSMSLQDIDQAENTAR 259
BLAST of exosome complex component rrp43 vs. SwissProt
Match: gi|29336812|sp|Q8TGX5.1|RRP42_METAC (RecName: Full=Exosome complex component Rrp42) HSP 1 Score: 129.028 bits (323), Expect = 1.697e-34 Identity = 74/252 (29.37%), Postives = 130/252 (51.59%), Query Frame = 0 Query: 19 EYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIMVDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALA 270 +Y + + G R DGR + R + + I A+GSA V G T V+ G+KL+ P + D+G ++ N++ P+ P+F+PGPP E A ++ + + SG +D+K LCI + W++ +D+ LN DGN++D + A +AAL T+V +E + + L ++ P+ T+A ++MVDP+ +EE++ +T+V ++ G + K G + L+ +L E LA Sbjct: 14 DYIYNLMIKGKRQDGR-GFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVHVLNDDGNIIDASCLAAIAAL------MTTMVPNE----------QQGLGEDVPLAMKEMPVGITIAKIGSKLMVDPSLDEEAVCETKLTIV-SSSDGSVAGMQKMGISPLTEAELFEAIDLA 247
BLAST of exosome complex component rrp43 vs. SwissProt
Match: gi|29337006|sp|Q9UXC0.1|RRP42_SULSO (RecName: Full=Exosome complex component Rrp42) HSP 1 Score: 127.872 bits (320), Expect = 5.905e-34 Identity = 89/261 (34.10%), Postives = 136/261 (52.11%), Query Frame = 0 Query: 25 IENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIMVDPTEEEESLAHAVVTVVLDAATGDL--VHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 E G R DGR LT+ RP+SI+ ADGSA+VK G T+V+ G KLE+ P+ + P+QG ++ NV+ PL + F+PGPP E A ++ + L +S +DL L I+ K W + +D+ L++ GNVLD A VAAL + +V VE G V N KL L + ++A + ++VDP +EES+ A ++ + T DL V K G ++S + + A+ T KL+++ Sbjct: 23 FEKGIRQDGRK-LTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYN---TKVYKVEQH----SNGISVNKNEVV-GKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISF---SYTPDLKIVGIQKSGKGSMSLQDIDQAENTAR---STAVKLLEE 268
BLAST of exosome complex component rrp43 vs. SwissProt
Match: gi|29336794|sp|Q8PTT7.1|RRP42_METMA (RecName: Full=Exosome complex component Rrp42) HSP 1 Score: 127.487 bits (319), Expect = 5.961e-34 Identity = 74/262 (28.24%), Postives = 132/262 (50.38%), Query Frame = 0 Query: 19 EYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIMVDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKL 280 +Y + + R DGR + R + + I A+GSA V G T V+ G+KL+ P + D+G ++ N++ P+ P+F+PGPP E A ++ + + SG +D+K LCI + W++ +D+ LN+DGN++D + A +AAL T+V +E + + L ++ P+ T+A ++MVDP+ +EE++ +T+V ++ G + K G L+ +L E +A + I L Sbjct: 14 DYIYNLMIKDKRQDGRG-FKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAAL------MTTMVPNE----------QQGLGENVPLAMKEMPVGITLAKIGSKLMVDPSLDEEAVCETKLTIV-SSSDGSVAGMQKMGPVPLTEAELFEAIDMAIEKAAEIRGL 257
BLAST of exosome complex component rrp43 vs. SwissProt
Match: gi|29336823|sp|Q8U0M0.1|RRP42_PYRFU (RecName: Full=Exosome complex component Rrp42) HSP 1 Score: 125.946 bits (315), Expect = 2.849e-33 Identity = 81/263 (30.80%), Postives = 131/263 (49.81%), Query Frame = 0 Query: 19 EYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIMVDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLI 281 +Y + ++ R D R + RP+ + G I A+GSA+VK G T V+ G+K L P + P+ G M NV+ PL P F+PGPP E A ++ I + S ++L+ + I K V+ +D+ L+HDGN++D +AAL + +P+V E+ +VE+ ++ L + PI+ T A + ++VDPT EEE + +T+ D TG + K G A ++ A K + I K+I Sbjct: 13 DYILNLLKEKKRIDDRG-FEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEE-------TGEVEI-LEEKEPLPVEKIPISVTFAKIGNYLVVDPTLEEEQIMDGRLTITTD-ETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRKII 265
BLAST of exosome complex component rrp43 vs. SwissProt
Match: gi|259645408|sp|C5A2B8.1|RRP42_THEGJ (RecName: Full=Exosome complex component Rrp42) HSP 1 Score: 124.79 bits (312), Expect = 8.535e-33 Identity = 84/265 (31.70%), Postives = 131/265 (49.43%), Query Frame = 0 Query: 25 IENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIMVDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAK-LIDKAGSVS 288 ++ G R DGRS E R + I G I A+GSA V+ G T V+ G+K+++ P + PD+G M NV+ PL P F+PGPP E A ++ I + S V+L+ L I K V+ +D+ L+HDGN+ D A +AAL +P+V E+ + + + L ++ PI T A I+VDP +EE++ + +T+ D TG + K G + ++ A K + K L++ GS S Sbjct: 19 LKEGKRIDGRS-FEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEPFPDLPDRGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEI--------IKLDEYEPLPVKHVPIPVTFAKIGSSIIVDPNLDEETVMDSRLTITTD-ETGHISAVQKGEGGSFKLEEVMYAIDTALKKADELRKILLEAVGSAS 273
BLAST of exosome complex component rrp43 vs. SwissProt
Match: gi|29337018|sp|Q9YC05.1|RRP42_AERPE (RecName: Full=Exosome complex component Rrp42) HSP 1 Score: 124.02 bits (310), Expect = 1.422e-32 Identity = 79/266 (29.70%), Postives = 135/266 (50.75%), Query Frame = 0 Query: 19 EYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIMVDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDKA 284 E + + G RP G +L R V I G I A+GSA+VK G+T V+ G+K + P + P+QG + + +F PL P F+PGPP E A ++ + L G VDL+ L I+ + WVL +DL ++HDGN+ D ++ A +A L LP+ E + ++ + +L ++++ + T A + I+VDP EEE+++ + +D G +V K G +L+ ++ + + K K +++A Sbjct: 17 EAYLSLLRKGWRP-GDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAPFKDTPNQGVLTVHAEFVPLASPVFEPGPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLWVDLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETGEIIIS-------KEGEGEELKVKTRVVTVTTAKIDRYIVVDPNIEEEAVSDVRLVTAVD-ENGRIVGLQKTGMGSLTEADIETMIGYSLEASKVYFKALEEA 273
BLAST of exosome complex component rrp43 vs. SwissProt
Match: gi|29336585|sp|O59224.1|RRP42_PYRHO (RecName: Full=Exosome complex component Rrp42) HSP 1 Score: 122.865 bits (307), Expect = 4.409e-32 Identity = 86/268 (32.09%), Postives = 132/268 (49.25%), Query Frame = 0 Query: 21 FRHHIEN----GSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIMVDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDKA 284 R HI N G R D R + RP+ I G I A+GSA+VK G T V+ G+K L P + P+ G M NV+ PL P F+PGPP E A ++ + S ++L+ + I K V+ +D+ L+HDGN++D A +AAL + +P+V E+ +VE+ ++ L + PI T A + ++VDP+ EEE + +TV D TG + K G A ++ A K + I K++ +A Sbjct: 11 MRDHIINLLKEGKRIDDRG-FEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVTDRGIRESRALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIASIAALLNAKVPKVEYNEET-------GEVEI-LEEKEPLPVERIPIPVTFAKIGNILVVDPSLEEELVMDGRLTVTTD-ETGHISAVQKGEGGAFKLEEVMYAVETAFKKAEEIRKIVLEA 268
BLAST of exosome complex component rrp43 vs. SwissProt
Match: gi|226740342|sp|B6YSE7.1|RRP42_THEON (RecName: Full=Exosome complex component Rrp42) HSP 1 Score: 118.627 bits (296), Expect = 1.658e-30 Identity = 81/254 (31.89%), Postives = 129/254 (50.79%), Query Frame = 0 Query: 21 FRHHI----ENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIMVDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALA 270 R HI + G R DGRS L + R + I I A+GSA VK G T V+ G+K+++ P + P++G + NV+ PL P F+PGPP E A ++ + + SG V+L+ L I K V+ +D+ L+HDGN+LD + +AAL +P+V V DE++ +V++ + L + PI T+A ++VDP +EE + +T+ D G + K G + ++ LA Sbjct: 11 MRDHILALLKEGKRVDGRS-LEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIKVDMGEPFPDLPEKGVITTNVELVPLASPSFEPGPPDERAIELARVVDRGIRESGAVELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALMSAKMPKV--VYDEES-----GEVQI-LDEYEPLPVSKMPIPVTIAKVGGNLLVDPNLDEELVMDGRITITTD-ENGMISSVQKSEGGSFKLEEVMYAIDLA 254
BLAST of exosome complex component rrp43 vs. SwissProt
Match: gi|29336948|sp|Q9HIP1.2|RRP42_THEAC (RecName: Full=Exosome complex component Rrp42) HSP 1 Score: 118.242 bits (295), Expect = 2.008e-30 Identity = 71/219 (32.42%), Postives = 113/219 (51.60%), Query Frame = 0 Query: 20 YFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIMVDPTEEEESLAHAVVTV 238 Y ++ G R DGR E R ++I + I A+GSA V G T VV G+K+E P + PDQG + NV+ P+ P F+ GPP + A S+ + + S ++ + L I++ K W++ +D+ L++DGN++D + A VAAL +AVV A + + KL + S PI+ TM D ++ DP+ EE+ + +TV Sbjct: 16 YILSTMKGGKRIDGRLP-DEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVFLDINVLDYDGNLIDASTIAAVAALR-------------NAVVPASKE----GGEDFKLPVSSTPISVTMVKIGDTLVCDPSLEEDQICGGRITV 216
BLAST of exosome complex component rrp43 vs. nr
Match: gi|555989998|ref|XP_005906823.1| (PREDICTED: exosome complex component RRP43 [Bos mutus] >gi|742099895|ref|XP_010833933.1| PREDICTED: exosome complex component RRP43 [Bison bison bison] >gi|1131164261|ref|XP_019826945.1| PREDICTED: exosome complex component RRP43 [Bos indicus]) HSP 1 Score: 271.552 bits (693), Expect = 2.423e-87 Identity = 133/273 (48.72%), Postives = 186/273 (68.13%), Query Frame = 0 Query: 12 FKGIQPLEYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIM-VDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 FK ++PLEY+R ++ RPDGR L E R +++ G+IG+ADGSA+VK G T V+CG+K E P + PD+G++VPNVD PLC +F+ GPP E AQVAS+FI +V+ NS I+ +DLCI K +WVL+ DL+CLNHDGN+LD AL+AAL ++ LP+VTI E+ A EVN ++S L +R+ P+A + A+F+D ++ VDPTEEEE LA +TVV+D G L HKPGG+ L+ KLQ+C + A +K + KL+D+ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRE-LGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEET-------ALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEE-GRLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDE 268
BLAST of exosome complex component rrp43 vs. nr
Match: gi|118601810|ref|NP_001073074.1| (exosome complex component RRP43 [Bos taurus] >gi|122135904|sp|Q2KHU3.1|EXOS8_BOVIN RecName: Full=Exosome complex component RRP43; AltName: Full=Exosome component 8; AltName: Full=Ribosomal RNA-processing protein 43 >gi|86826533|gb|AAI12882.1| Exosome component 8 [Bos taurus] >gi|296481825|tpg|DAA23940.1| TPA: exosome complex exonuclease RRP43 [Bos taurus]) HSP 1 Score: 270.781 bits (691), Expect = 4.044e-87 Identity = 133/273 (48.72%), Postives = 186/273 (68.13%), Query Frame = 0 Query: 12 FKGIQPLEYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIM-VDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 FK ++PLEY+R ++ RPDGR L E R +++ G+IG+ADGSA+VK G T V+CG+K E P + PD+G++VPNVD PLC +F+ GPP E AQVAS+FI +V+ NS I+ +DLCI K +WVL+ DL+CLNHDGN+LD AL+AAL ++ LP+VTI E+ A EVN ++S L +R+ P+A + A+F+D ++ VDPTEEEE LA +TVV+D G L HKPGG+ L+ KLQ+C + A +K + KL+D+ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRE-LGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEET-------ALAEVNLKKKSCLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEE-GRLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDE 268
BLAST of exosome complex component rrp43 vs. nr
Match: gi|1246169406|ref|XP_022430409.1| (exosome complex component RRP43 [Delphinapterus leucas] >gi|1246169408|ref|XP_022430410.1| exosome complex component RRP43 [Delphinapterus leucas]) HSP 1 Score: 270.781 bits (691), Expect = 5.084e-87 Identity = 132/273 (48.35%), Postives = 188/273 (68.86%), Query Frame = 0 Query: 12 FKGIQPLEYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIM-VDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 FK ++PLEY+R ++ RPDGR L E R +++ G+IG+ADGS++VK G T V+CG+K+E P + PD+G++VPNVD PLC +F+ GPP E AQVAS+FI +V+ NS +V +DLCI K +WVL+ DL+CLNHDGN+LD AL+AAL ++ LP+VTI E+ A EVN ++S L +R+ P+A + A+F+D ++ VDPTEEEE+LA +TVV+D G L HKPGG+ L+ KLQ+C + A +K + KL+D+ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRE-LGEFRTTTVNIGSIGTADGSSLVKLGNTTVICGIKVEFGAPPTDAPDKGYVVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVIENSQVVQKEDLCISPGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEET-------ALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTEEEENLATGTLTVVMDEE-GKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDE 268
BLAST of exosome complex component rrp43 vs. nr
Match: gi|466070326|ref|XP_004282280.1| (PREDICTED: exosome complex component RRP43 [Orcinus orca]) HSP 1 Score: 270.396 bits (690), Expect = 7.443e-87 Identity = 131/273 (47.99%), Postives = 187/273 (68.50%), Query Frame = 0 Query: 12 FKGIQPLEYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIM-VDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 FK ++PLEY+R ++ RPDGR L E R +++ G+IG+ADGS++VK G T V+CG+K E P + PD+G++VPNVD PLC +F+ GPP E AQVAS+FI +V+ NS ++ +DLCI K +WVL+ DL+CLNHDGN+LD AL+AAL ++ LP+VTI E+ A EVN ++S L +R+ P+A + A+F+D ++ VDPTEEEE+LA +TVV+D G L HKPGG+ L+ KLQ+C + A +K + KL+D+ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRE-LGEFRTTTVNIGSIGTADGSSLVKLGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVIENSQVIQKEDLCISPGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEET-------ASAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTEEEENLATGTLTVVMDEE-GKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDE 268
BLAST of exosome complex component rrp43 vs. nr
Match: gi|426236417|ref|XP_004012165.1| (PREDICTED: exosome complex component RRP43 isoform X1 [Ovis aries] >gi|548488226|ref|XP_005687555.1| PREDICTED: exosome complex component RRP43 [Capra hircus] >gi|556764979|ref|XP_005977756.1| PREDICTED: exosome complex component RRP43 [Pantholops hodgsonii] >gi|803316793|ref|XP_012016660.1| PREDICTED: exosome complex component RRP43 isoform X1 [Ovis aries musimon]) HSP 1 Score: 270.011 bits (689), Expect = 1.021e-86 Identity = 132/273 (48.35%), Postives = 186/273 (68.13%), Query Frame = 0 Query: 12 FKGIQPLEYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIM-VDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 FK ++PLEY+R ++ RPDGR L E R +++ G+IG+ADGS++VK G T V+CG+K E P + PD+G++VPNVD PLC +F+ GPP E AQVAS+FI +V+ NS I+ +DLCI K +WVL+ DL+CLNHDGN+LD AL+AAL ++ LP+VTI E+ A EVN ++S L +R+ P+A + A+F+D ++ VDPTEEEE LA +TVV+D G L HKPGG+ L+ KLQ+C + A +K + KL+D+ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRE-LGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEET-------ALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEE-GKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDE 268
BLAST of exosome complex component rrp43 vs. nr
Match: gi|594692861|ref|XP_007193718.1| (PREDICTED: exosome complex component RRP43 [Balaenoptera acutorostrata scammoni]) HSP 1 Score: 269.626 bits (688), Expect = 1.462e-86 Identity = 131/273 (47.99%), Postives = 187/273 (68.50%), Query Frame = 0 Query: 12 FKGIQPLEYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIM-VDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 FK ++PLEY+R ++ RPDGR L E R +++ G+IG+ADGS++VK G T V+CG+K E P + PD+G++VPNVD PLC +F+ GPP E AQVAS+FI +V+ NS ++ +DLCI K +WVL+ DL+CLNHDGN+LD AL+AAL ++ LP+VTI E+ A EVN ++S L +R+ P+A + A+F+D ++ VDPTEEEE+LA +TVV+D G L HKPGG+ L+ KLQ+C + A +K + KL+D+ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRE-LGEFRTTTVNIGSIGTADGSSLVKLGNTTVICGIKAEFGAPPTDAPDKGYIVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVIENSQVIQKEDLCISPGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEET-------ALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTEEEENLATGTLTVVMDEE-GKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDE 268
BLAST of exosome complex component rrp43 vs. nr
Match: gi|560912840|ref|XP_006182701.1| (PREDICTED: exosome complex component RRP43 [Camelus ferus] >gi|560975748|ref|XP_006210174.1| PREDICTED: exosome complex component RRP43 [Vicugna pacos] >gi|743712498|ref|XP_010949787.1| PREDICTED: exosome complex component RRP43 [Camelus bactrianus] >gi|744544103|ref|XP_010992184.1| PREDICTED: exosome complex component RRP43 [Camelus dromedarius]) HSP 1 Score: 269.626 bits (688), Expect = 1.511e-86 Identity = 132/273 (48.35%), Postives = 187/273 (68.50%), Query Frame = 0 Query: 12 FKGIQPLEYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIM-VDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 FK ++PLEY+R ++ RPDGR L E R +++ G+IG+ADGS++V+ G T V+CG+K E P A+ PD+G++VPNVD PLC +F+ GPP E AQVAS+FI +V+ NS I+ +DLCI K +WVL+ DL+CLNHDGN+LD AL+AAL ++ LP+VTI E+ A EVN ++S L +R+ P+A + A+F+D ++ VDPTEEEE LA +TVV+D G L HKPGG+ L+ KLQ+C + A +K + KL+D+ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRE-LGEFRTTTVNIGSIGTADGSSLVRLGNTTVICGIKAEFGAPPADAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVRLPEVTINEET-------ALAEVNFKKKSHLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEE-GKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDE 268
BLAST of exosome complex component rrp43 vs. nr
Match: gi|602708049|ref|XP_007464290.1| (PREDICTED: exosome complex component RRP43 [Lipotes vexillifer] >gi|1131208507|ref|XP_019792298.1| PREDICTED: exosome complex component RRP43 [Tursiops truncatus]) HSP 1 Score: 269.24 bits (687), Expect = 1.779e-86 Identity = 131/273 (47.99%), Postives = 187/273 (68.50%), Query Frame = 0 Query: 12 FKGIQPLEYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIM-VDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 FK ++PLEY+R ++ RPDGR L E R +++ G+IG+ADGS++VK G T V+CG+K E P + PD+G++VPNVD PLC +F+ GPP E AQVAS+FI +V+ NS ++ +DLCI K +WVL+ DL+CLNHDGN+LD AL+AAL ++ LP+VTI E+ A EVN ++S L +R+ P+A + A+F+D ++ VDPTEEEE+LA +TVV+D G L HKPGG+ L+ KLQ+C + A +K + KL+D+ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRE-LGEFRTTTVNIGSIGTADGSSLVKLGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVIENSQVIQKEDLCISPGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEET-------ALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTEEEENLATGTLTVVMDEE-GKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDE 268
BLAST of exosome complex component rrp43 vs. nr
Match: gi|850307897|ref|XP_004711301.2| (PREDICTED: exosome complex component RRP43 [Echinops telfairi]) HSP 1 Score: 269.24 bits (687), Expect = 2.260e-86 Identity = 132/273 (48.35%), Postives = 187/273 (68.50%), Query Frame = 0 Query: 12 FKGIQPLEYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIM-VDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 FK ++PLEY+R ++ RPDGR L E R +++ G+I +ADGSA+VK G T V+CG+K E A P + PD+G++VPNVD PPLC P+F+ GPP E AQVAS+FI +V+ NS I+ +DLCI + K +WVL+ DL+CL++DGN+LD AL+AAL ++ LP+VTI E+ A +VN +RS L +R P+A + AIF+D ++ VDPT EEE LA +T+V+D G L HKPGG+ L+ KLQ+C + A +K + KL+D+ Sbjct: 13 FKTVEPLEYYRRFLKENCRPDGR-ELGEFRTTTVNIGSITTADGSALVKLGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSPRFRSGPPGEDAQVASQFIADVIENSQIIQKEDLCISQGKLAWVLYCDLLCLDYDGNILDACTFALLAALKNVQLPEVTISEET-------ALAKVNLKKRSHLNIRHYPVATSFAIFDDTLLIVDPTGEEEHLATGTLTIVMDEE-GKLCSLHKPGGSGLTGTKLQDCLSRAVTRHKEVKKLMDE 276
BLAST of exosome complex component rrp43 vs. nr
Match: gi|1187529114|ref|XP_020747580.1| (exosome complex component RRP43 [Odocoileus virginianus texanus]) HSP 1 Score: 268.855 bits (686), Expect = 2.662e-86 Identity = 130/273 (47.62%), Postives = 187/273 (68.50%), Query Frame = 0 Query: 12 FKGIQPLEYFRHHIENGSRPDGRSNLTELRPVSISQGTIGSADGSAIVKQGQTIVVCGLKLELAPPHANDPDQGFMVPNVDFPPLCHPQFKPGPPPEPAQVASKFIHEVLTNSGIVDLKDLCIQESKYSWVLHMDLMCLNHDGNVLDCALKALVAALNDLGLPQVTIVEDEDAVVDAGAKVEVNTAQRSKLTLRSKPIACTMAIFEDQIM-VDPTEEEESLAHAVVTVVLDAATGDLVHFHKPGGAALSRHKLQECTALAKKHYKTIAKLIDK 283 FK ++PLEY+R ++ RPDGR L E R +++ G+IG+ADGS++VK G T V+CG+K E P + PD+G++VPNVD PLC +F+ GPP E AQVAS+FI +V+ NS I++ +DLCI K +WVL+ DL+CLNHDGN+LD AL+AAL ++ LP+VTI E+ A EVN ++S L +R+ P+A + A+F+D ++ VDPTEEEE LA +TVV+D G L HKPGG+ L+ KLQ+C + A ++ + +L+D+ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRE-LGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVIENSQIINKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEET-------ALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEE-GRLCCLHKPGGSGLTGSKLQDCMSRAVTRHREVKQLMDE 268 The following BLAST results are available for this feature:
BLAST of exosome complex component rrp43 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of exosome complex component rrp43 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of exosome complex component rrp43 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold552_size138156:111470..112434- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold552_size138156-snap-gene-0.29 ID=maker-scaffold552_size138156-snap-gene-0.29|Name=exosome complex component rrp43|organism=Tigriopus kingsejongensis|type=gene|length=965bp|location=Sequence derived from alignment at scaffold552_size138156:111470..112434- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'exosome complex component rrp43' has the following synonyms
Add to Basket
|