rna helicase, maker-scaffold554_size137761-snap-gene-0.2 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000010143 (supercontig:LSalAtl2s:LSalAtl2s66:712270:714003:-1 gene:EMLSAG00000010143 transcript:EMLSAT00000010143 description:"augustus_masked-LSalAtl2s66-processed-gene-7.1") HSP 1 Score: 214.927 bits (546), Expect = 6.826e-62 Identity = 140/406 (34.48%), Postives = 207/406 (50.99%), Query Frame = 0 Query: 23 MARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDA---PLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQS---ANASTLVQRVF--EVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 420 M + + ++ P+PIQ Q P +L G DLI A TG+GKT AF LP IH D+ P ++R G + L+L PTRELA Q+AD VK Y + G IK+VCV+GG Q++ + G I++ATP N I++ C I ++ + LVLDEADRML +GF ++ IL + +QT++ SAT+P V+ L + DPI V + S A ++ Q++F E E+ + LL +A+IF++ K + + L G+ + HG + Q R + L DFK G + +LIATD+A+RG+D+E + VINFD P S +Y+HRIGRSGRAG+ G ++S + + D Sbjct: 1 MTAIQKRGFKNPSPIQCQAWPYLLKGLDLIGIAQTGTGKTLAFLLPSF--IHIDSQSIPREKRGGP----NVLVLSPTRELALQIADEVKKY--EYRG-IKSVCVYGGGDRKAQVKVVTQGVQIVIATP------------------GRLNDLIESGC------------------------------------IAVESITYLVLDEADRMLDMGFEPQIRKILLDVRPDRQTVMTSATWPPGVRRLASNYMKDPITVSIGSLDLAAVHSVTQKIFVVESEEEKDDRLLDFFNNMTPEDKAIIFMSKKAKVDDYSSSLCLAGVDCQSIHGGRDQMDREQALLDFKLGHVRILIATDVASRGIDVEDISHVINFDFPNSMEEYVHRIGRSGRAGKKGSSISFMTYRD 343 HSP 2 Score: 172.17 bits (435), Expect = 1.420e-46 Identity = 93/232 (40.09%), Postives = 139/232 (59.91%), Query Frame = 0 Query: 441 GTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQS---ANASTLVQRVF--EVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 667 G I++ATPGRL DLI S I ++ + LVLDEADRML +GF ++ IL + +QT++ SAT+P V+ L + DPI V + S A ++ Q++F E E+ + LL +A+IF++ K + + L G+ + HG + Q R + L DFK G + +LIATD+A+RG+D+E + VINFD P S +Y+HRIGRSGRAG+ G ++S + + D Sbjct: 112 GVQIVIATPGRLNDLIESGCIAVESITYLVLDEADRMLDMGFEPQIRKILLDVRPDRQTVMTSATWPPGVRRLASNYMKDPITVSIGSLDLAAVHSVTQKIFVVESEEEKDDRLLDFFNNMTPEDKAIIFMSKKAKVDDYSSSLCLAGVDCQSIHGGRDQMDREQALLDFKLGHVRILIATDVASRGIDVEDISHVINFDFPNSMEEYVHRIGRSGRAGKKGSSISFMTYRD 343
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000004918 (supercontig:LSalAtl2s:LSalAtl2s259:1039310:1040989:-1 gene:EMLSAG00000004918 transcript:EMLSAT00000004918 description:"maker-LSalAtl2s259-augustus-gene-10.16") HSP 1 Score: 213.001 bits (541), Expect = 4.481e-61 Identity = 145/394 (36.80%), Postives = 206/394 (52.28%), Query Frame = 0 Query: 31 YQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKG--NFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCV-FGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEV--EKGRKTALLAHLIQQHQWR-QALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 416 ++ PTPIQ+ P V +GRD+I A TGSGKT AF++P L I E +R KG + LI+ PTRELA Q ++S K++CV+GGV+ Q Q+L+ G +ILVATP +LA++ CV GVS +VLDEADRML GF +++ IL ++QT LFSAT+P+ ++ L HE L PI+V + S + A V ++ EV E+ R + L + H+ + + LIFV K + L + L K HGDK Q +R + +E+FKSG+I +LIATD+AARGLDI + V+N+ P + DY+HRIGR+GRAG+ G+A + Sbjct: 128 FKAPTPIQSMTWPVVASGRDVIGIAETGSGKTLAFSVPALAHISERK---QRPVKGVNSMPIMLIVAPTRELAMQSQVVLESAGKEI--GFKSLCVYGGVNKYAQRQSLKSGVEILVATPGRLLDLAEE------------------GCVDLSGVSY-------------------------------------VVLDEADRMLDQGFEQDIRRILGQTHKERQTCLFSATWPDSIRKLAHEFLKSPIKVTIGSEDLAAGKTVTQIVEVVDERSRDGKIKGLLNKYHKKKNRILIFVLYKREADRLWNSL-KHEWNCTTIHGDKSQDARIQAVENFKSGKIPILIATDVAARGLDIPDVEYVLNYSFPLTIEDYVHRIGRTGRAGKSGIAHTFF 460 HSP 2 Score: 181.415 bits (459), Expect = 1.222e-49 Identity = 101/231 (43.72%), Postives = 143/231 (61.90%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEV--EKGRKTALLAHLIQQHEWR-QALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 663 L+ G +ILVATPGRLLDL + L V +VLDEADRML GF +++ IL ++QT LFSAT+P+ ++ L HE L PI+V + S + A V ++ EV E+ R + L + H+ + + LIFV K + L + L K HGDK Q +R + +E+FKSG+I +LIATD+AARGLDI + V+N+ P + DY+HRIGR+GRAG+ G+A + Sbjct: 231 LKSGVEILVATPGRLLDLAEEGCVDLSGVSYVVLDEADRMLDQGFEQDIRRILGQTHKERQTCLFSATWPDSIRKLAHEFLKSPIKVTIGSEDLAAGKTVTQIVEVVDERSRDGKIKGLLNKYHKKKNRILIFVLYKREADRLWNSL-KHEWNCTTIHGDKSQDARIQAVENFKSGKIPILIATDVAARGLDIPDVEYVLNYSFPLTIEDYVHRIGRTGRAGKSGIAHTFF 460
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000011390 (supercontig:LSalAtl2s:LSalAtl2s787:174367:180499:1 gene:EMLSAG00000011390 transcript:EMLSAT00000011390 description:"augustus_masked-LSalAtl2s787-processed-gene-0.30") HSP 1 Score: 216.083 bits (549), Expect = 9.991e-60 Identity = 137/416 (32.93%), Postives = 213/416 (51.20%), Query Frame = 0 Query: 12 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQL--QSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQ-ALIFVNAKNSCEHLADKLYKRGIIAEV-----FHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 419 N++ G+ ++ L Y++PTPIQ Q IP +++GRD+I A TGSGKT AF LPL + I L+ +G+ +I+ PTREL Q+ +K ++ GA ++VCV+GG ++ Q+ L+ G +I+V TP G + D+L A GR+ + ++ +VLDEADRM +GF ++ I+ KQ ++FSATFP Q++ L +L P+EV + +S + Q V+ +E+ K L L+ Q +IFV+ + EH AD L K + A HG Q R I+ +FK+G++ +L+AT +AARGLD+++L +V+N+D P DY+HR GR+GRAG G A + + E Sbjct: 223 NWTHAGVSQRILDLLKRNGYEKPTPIQTQAIPIIMSGRDMIGIAKTGSGKTLAFLLPLFRHIMAQPELE----EGDGPIAIIMTPTRELCMQIGKEIKKFSKAIKGA-RSVCVYGGTGISEQIAELKRGAEIIVCTP----------------------GRM---------------------IDMLAANSGRVTN--------CRRITYVVLDEADRMFDMGFEPQVSRIIDNCRPDKQMVMFSATFPRQMEALARRILCKPVEVTVGGRSVVCKDIDQSVYVLEEEHKFLKLLELLGQRSSEGLIIIFVDKQ---EH-ADSLLKDLMSASYTSCASLHGGVDQYDRDSIITNFKNGKVKILVATSVAARGLDVKELVLVVNYDCPNHYEDYVHRCGRTGRAGNSGFAATFLTPE 578 HSP 2 Score: 154.066 bits (388), Expect = 6.300e-39 Identity = 88/240 (36.67%), Postives = 142/240 (59.17%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLD---KVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQL--QSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQ-ALIFVNAKNSCEHLADKLYKRGIIAEV-----FHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 666 L+ G +I+V TPGR++D++++N+ ++ ++ +VLDEADRM +GF ++ I+ KQ ++FSATFP Q++ L +L P+EV + +S + Q V+ +E+ K L L+ Q +IFV+ + EH AD L K + A HG Q R I+ +FK+G++ +L+AT +AARGLD+++L +V+N+D P DY+HR GR+GRAG G A + + E Sbjct: 343 LKRGAEIIVCTPGRMIDMLAANSGRVTNCRRITYVVLDEADRMFDMGFEPQVSRIIDNCRPDKQMVMFSATFPRQMEALARRILCKPVEVTVGGRSVVCKDIDQSVYVLEEEHKFLKLLELLGQRSSEGLIIIFVDKQ---EH-ADSLLKDLMSASYTSCASLHGGVDQYDRDSIITNFKNGKVKILVATSVAARGLDVKELVLVVNYDCPNHYEDYVHRCGRTGRAGNSGFAATFLTPE 578
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000000395 (supercontig:LSalAtl2s:LSalAtl2s1063:103535:105763:1 gene:EMLSAG00000000395 transcript:EMLSAT00000000395 description:"augustus_masked-LSalAtl2s1063-processed-gene-0.12") HSP 1 Score: 206.838 bits (525), Expect = 3.509e-57 Identity = 153/462 (33.12%), Postives = 217/462 (46.97%), Query Frame = 0 Query: 12 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSN-AIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEVEKGRKT---ALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPLRGGTDILVATPGRLLDLISSNAIKLDKVK 467 +F + L PL+ + L Y PTPIQA IP LAGRD+ A TG+GKTA + LP+L++ L+ P N +I V V VPTREL QV K + F +I GG+ + Q ALR DI++ATPGRL+D I + L+ ++ L+LDEADRML F E++ I+K K+QTLLFSAT ++V L+ L P+++ + S A L Q + R++ +LA L+ + ++F+ K C L L G+ HG+ Q R L+ FK EIDVLI TD+AARGLDI + VIN+ LP + Y+HR+GR+ RAG G ++S+ D + I K + DP++ T P D+IS KL+ V+ Sbjct: 183 SFYAMXLSRPLLKAIEXLRYVHPTPIQASTIPVALAGRDVCGCAATGTGKTAXYMLPILER-------------------LLFRP-------------------NQSITRVIVL-----------------------VPTRELGVQVYQVSKQLS-QFT-SIDIALSVGGLDLKAQELALRKNPDIVIATPGRLIDHIKNTPTFGLENIEVLILDEADRMLDECFLEQMKEIVKSCSPKRQTLLFSATMTDKVNDLSTMALRKPVKIFVDSNKVVAWNLRQEFVRIRANRESDREGILAALVCRTFRDHTIVFIQTKVQCHRLLILLSLLGVRVGELHGNLSQPQRLESLKKFKEEEIDVLITTDVAARGLDISGVKTVINYTLPTTLEHYIHRVGRTARAGRAGRSVSIAGEGDRKMVREIVKNAR---DPVKART-----VPQ---DIISKYVQKLESVR 570 HSP 2 Score: 154.451 bits (389), Expect = 2.424e-39 Identity = 90/231 (38.96%), Postives = 131/231 (56.71%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSN-AIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEVEKGRKT---ALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSL 662 LR DI++ATPGRL+D I + L+ ++ L+LDEADRML F E++ I+K K+QTLLFSAT ++V L+ L P+++ + S A L Q + R++ +LA L+ + ++F+ K C L L G+ HG+ Q R L+ FK EIDVLI TD+AARGLDI + VIN+ LP + Y+HR+GR+ RAG G ++S+ Sbjct: 299 LRKNPDIVIATPGRLIDHIKNTPTFGLENIEVLILDEADRMLDECFLEQMKEIVKSCSPKRQTLLFSATMTDKVNDLSTMALRKPVKIFVDSNKVVAWNLRQEFVRIRANRESDREGILAALVCRTFRDHTIVFIQTKVQCHRLLILLSLLGVRVGELHGNLSQPQRLESLKKFKEEEIDVLITTDVAARGLDISGVKTVINYTLPTTLEHYIHRVGRTARAGRAGRSVSI 529
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000008048 (supercontig:LSalAtl2s:LSalAtl2s479:213954:217803:1 gene:EMLSAG00000008048 transcript:EMLSAT00000008048 description:"maker-LSalAtl2s479-augustus-gene-2.18") HSP 1 Score: 201.445 bits (511), Expect = 3.458e-55 Identity = 145/447 (32.44%), Postives = 207/447 (46.31%), Query Frame = 0 Query: 6 NTTTPTNFSDLGLISPLMARLTE-LEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLP----------------------SK---KQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF 424 N P +SP + + E + Y +PTPIQ Q IP L RD+I A TGSGKT AF LP +LV + L K T+M+ G ++ PTRELA+Q+ + ++ I TV V GG+S Q LR G +I++ATPGRL+D++ + + L + +VLDEADRM+ +GF ++ IL +P SK +QT++F+AT P V+ L L P V + S + Q V+ +++ K L ++ +IFVN K + LA L K G A HG KGQ R L K+G D+L+ATD+A RG+DI+ + +VIN+D+ +S Y HRIGR+GRAG+ G A+S ED F Sbjct: 318 NIPHPIRKWKEACLSPEILEIIEKVGYTEPTPIQRQAIPIGLQNRDIIGVAETGSGKTCAFLLP------------------------LLVWIQSLPK----------------------------TTRMEDQDQGPYAIIM--APTRELAQQIEEECNTFGGPL--GIXTVAVIGGLSREDQGFKLRLGCEIVIATPGRLIDVLENRYLVLSRCTYIVLDEADRMIDMGFEPDVQKILDHMPVTNAKPDNDEAENEAALLENIRSKNKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIGRPVERVEQVVYMMKENDKRNKLISILNNGIEPPIIIFVNQKKGADKLAQGLEKMGYNAATLHGGKGQEQREYALSGLKAGNKDILVATDVAGRGIDIKNVSLVINYDMAKSIEPYTHRIGRTGRAGKSGKAISFCTQEDSPLF 708 HSP 2 Score: 154.451 bits (389), Expect = 2.700e-39 Identity = 94/261 (36.02%), Postives = 138/261 (52.87%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLP----------------------SK---KQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF 671 LR G +I++ATPGRL+D++ + + L + +VLDEADRM+ +GF ++ IL +P SK +QT++F+AT P V+ L L P V + S + Q V+ +++ K L ++ +IFVN K + LA L K G A HG KGQ R L K+G D+L+ATD+A RG+DI+ + +VIN+D+ +S Y HRIGR+GRAG+ G A+S ED F Sbjct: 448 LRLGCEIVIATPGRLIDVLENRYLVLSRCTYIVLDEADRMIDMGFEPDVQKILDHMPVTNAKPDNDEAENEAALLENIRSKNKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIGRPVERVEQVVYMMKENDKRNKLISILNNGIEPPIIIFVNQKKGADKLAQGLEKMGYNAATLHGGKGQEQREYALSGLKAGNKDILVATDVAGRGIDIKNVSLVINYDMAKSIEPYTHRIGRTGRAGKSGKAISFCTQEDSPLF 708
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000011452 (supercontig:LSalAtl2s:LSalAtl2s790:154718:161369:1 gene:EMLSAG00000011452 transcript:EMLSAT00000011452 description:"maker-LSalAtl2s790-augustus-gene-1.30") HSP 1 Score: 200.675 bits (509), Expect = 6.113e-55 Identity = 134/383 (34.99%), Postives = 204/383 (53.26%), Query Frame = 0 Query: 117 GAIKTVCVFGGVSVNTQMQ-ALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEV-QLQSANASTLVQRVFEV-EKG--RKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDY----HHFKIIEKKNKIRLDPLRGGTDILVATPGRLLDL-ISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAI 489 G+ KT + ++ Q Q L G + VPTRELA Q+ K + ++ + VC +GG S Q + G +I +ATPGR++D+I L +V LVLDEADRM +GF ++ +I + +QTLLFSATF ++V+ L ++L DPI+V Q AS V ++ +V EKG + +L +L++ LIFV K +CE LA L + E+ HGD Q R I+ FK + +L+ATD+AARGLDI + V+N+D+ R + HRIGR+GRAG G A +L+ +D H + +E+ N+ D+ P L+DL + S+ K + K + + + LGF E +D++ Sbjct: 323 GSGKTATFLWPIIIHIQHQRPLLNGEGPIALILVPTRELALQIYTEAKKFGKVYD--LNAVCAYGGGSKWEQSKCFESGAEIAIATPGRMIDMIKMKVTNLQRVTYLVLDEADRMFDMGFEAQVRSICDHVRPDRQTLLFSATFKKKVEKLARDVLTDPIKVVQGSIGEASEDVTQIVKVLEKGGYKWEWVLQNLVEFTSAGSVLIFVTKKLNCEELAQNLKLKEFECELIHGDLNQHVRNEIIYKFKKKQFPILVATDVAARGLDIPHIRTVLNYDIARDIDTHTHRIGRTGRAGIKGTAYTLVTEKDKEFAGHIVRNLEQANQ----------DV----PKELMDLAMQSSWFKNSRFKK---GKMGKTVGLGFKESVDSL 686 HSP 2 Score: 170.244 bits (430), Expect = 1.363e-44 Identity = 96/234 (41.03%), Postives = 139/234 (59.40%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEV-QLQSANASTLVQRVFEV-EKG--RKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 667 G +I +ATPGR++D+I L +V LVLDEADRM +GF ++ +I + +QTLLFSATF ++V+ L ++L DPI+V Q AS V ++ +V EKG + +L +L++ LIFV K +CE LA L + E+ HGD Q R I+ FK + +L+ATD+AARGLDI + V+N+D+ R + HRIGR+GRAG G A +L+ +D Sbjct: 396 FESGAEIAIATPGRMIDMIKMKVTNLQRVTYLVLDEADRMFDMGFEAQVRSICDHVRPDRQTLLFSATFKKKVEKLARDVLTDPIKVVQGSIGEASEDVTQIVKVLEKGGYKWEWVLQNLVEFTSAGSVLIFVTKKLNCEELAQNLKLKEFECELIHGDLNQHVRNEIIYKFKKKQFPILVATDVAARGLDIPHIRTVLNYDIARDIDTHTHRIGRTGRAGIKGTAYTLVTEKD 629
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000002581 (supercontig:LSalAtl2s:LSalAtl2s151:1305107:1306803:-1 gene:EMLSAG00000002581 transcript:EMLSAT00000002581 description:"maker-LSalAtl2s151-snap-gene-13.39") HSP 1 Score: 194.897 bits (494), Expect = 1.195e-54 Identity = 104/276 (37.68%), Postives = 165/276 (59.78%), Query Frame = 0 Query: 150 PTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELL--NDPIEVQLQSAN--ASTLVQRVFE-VEKGRKTALLAHLIQ---QHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 417 PTRELA+Q+ + V +A I T C+ GG Q++ L G +I+VATPGRL+DL+ + L + +VLDEADRML +GF ++ I++ + +Q L++SAT+P +V++L H+ D V + S+ A+ L+ + F+ E+ K + +++ + + ++ LIF K + L KL + + HGDK Q RTR L+ F+SG I++L+ATD+A+RGLD+ + VVIN+D P + DY+HRIGR+GR + G + S D Sbjct: 160 PTRELAEQIHNVVDGFA----SKIPTACLVGGNHKQGQIRDLNRGAEIVVATPGRLIDLMEDGDVDLKRCSYMVLDEADRMLDMGFEPQIRKIMRQVRPDRQLLMWSATWPSEVQSLAHDFFGGTDYAHVNIGSSELXANKLIMQDFKFCERFEKMDSIKEILESLSEVESKKVLIFAATKIRVDQLVRKLKYWNFVVDGIHGDKTQAMRTRALDKFRSGRINILVATDVASRGLDVNDIKVVINYDFPNNIEDYVHRIGRTGRCSKEGKSFSFFD 431 HSP 2 Score: 172.94 bits (437), Expect = 8.579e-47 Identity = 93/244 (38.11%), Postives = 148/244 (60.66%), Query Frame = 0 Query: 429 KKNKIRLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELL--NDPIEVQLQSAN--ASTLVQRVFE-VEKGRKTALLAHLIQ---QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 664 K+ +IR L G +I+VATPGRL+DL+ + L + +VLDEADRML +GF ++ I++ + +Q L++SAT+P +V++L H+ D V + S+ A+ L+ + F+ E+ K + +++ + E ++ LIF K + L KL + + HGDK Q RTR L+ F+SG I++L+ATD+A+RGLD+ + VVIN+D P + DY+HRIGR+GR + G + S D Sbjct: 190 KQGQIR--DLNRGAEIVVATPGRLIDLMEDGDVDLKRCSYMVLDEADRMLDMGFEPQIRKIMRQVRPDRQLLMWSATWPSEVQSLAHDFFGGTDYAHVNIGSSELXANKLIMQDFKFCERFEKMDSIKEILESLSEVESKKVLIFAATKIRVDQLVRKLKYWNFVVDGIHGDKTQAMRTRALDKFRSGRINILVATDVASRGLDVNDIKVVINYDFPNNIEDYVHRIGRTGRCSKEGKSFSFFD 431
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000000249 (supercontig:LSalAtl2s:LSalAtl2s1036:82728:88820:1 gene:EMLSAG00000000249 transcript:EMLSAT00000000249 description:"maker-LSalAtl2s1036-augustus-gene-0.32") HSP 1 Score: 192.2 bits (487), Expect = 2.384e-54 Identity = 126/432 (29.17%), Postives = 199/432 (46.06%), Query Frame = 0 Query: 8 TTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSA-NASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPL 438 T F D L + + E +++P+PIQ IP L+GRD++A A G+GKT A+++P+L+QI + + G+I+VPTRELA Q + + H N +K + GG ++ + + ++VATP +L ++ V + K +C LDEAD++L F LD +++ LP ++Q LL SATFP V+ + P EV L + Q V++ +K L L + Q Q++IF N+ E LA K+ + G H Q R R+ DF++G L+ +D+ RG+DI+ + VVINFD P+ Y+HRIGRSGR G +G+A++LI ++D IE + + P+ Sbjct: 48 TKGNEFEDFCLKRETLMGIFEKGWEKPSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPILEQI---------DPSNDVIQGMIIVPTRELALQTSQICIELSKHRN--VKVMVTTGGTNLKEDIMRIYEKVHLVVATPGRILDLIEKGVAKVMN--------CKVIC----------------------------------------------LDEADKLLGHDFKGMLDRLIEHLPERRQILLXSATFPLTVEYFMKRHMKSPYEVNLMDELTLKGITQYYAFVQERQKVHCLNTLFTKLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHAKMAQTHRNRVFHDFRAGLCRNLVCSDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDDRFLLHRIEGELGTEIKPI 414 HSP 2 Score: 162.54 bits (410), Expect = 1.031e-43 Identity = 85/225 (37.78%), Postives = 127/225 (56.44%), Query Frame = 0 Query: 444 ILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSA-NASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 667 ++VATPGR+LDLI K+ K + LDEAD++L F LD +++ LP ++Q LL SATFP V+ + P EV L + Q V++ +K L L + + Q++IF N+ E LA K+ + G H Q R R+ DF++G L+ +D+ RG+DI+ + VVINFD P+ Y+HRIGRSGR G +G+A++LI ++D Sbjct: 172 LVVATPGRILDLIEKGVAKVMNCKVICLDEADKLLGHDFKGMLDRLIEHLPERRQILLXSATFPLTVEYFMKRHMKSPYEVNLMDELTLKGITQYYAFVQERQKVHCLNTLFTKLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHAKMAQTHRNRVFHDFRAGLCRNLVCSDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDD 396
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000005110 (supercontig:LSalAtl2s:LSalAtl2s26:913218:916036:-1 gene:EMLSAG00000005110 transcript:EMLSAT00000005110 description:"maker-LSalAtl2s26-augustus-gene-8.40") HSP 1 Score: 194.512 bits (493), Expect = 1.923e-53 Identity = 109/285 (38.25%), Postives = 164/285 (57.54%), Query Frame = 0 Query: 149 VPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILK---LLPS-KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQA----------LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 417 PTRELA Q+ D K +A + ++ V+GG +V QM L G +LVATPGRL+D++ I L++ K LVLDEADRML +GF ++ I++ + P+ ++QTL+FSATFP++++ L + L + I V + + + Q++ V++ K + L L++ + L+FV + + L + LYK G HGD+ Q R L F+SG +L+AT +AARGLDI + VINFDLP +Y+HRIGR+GR G +GLA S + Sbjct: 269 APTRELATQIFDEAKKFA--YRSLVQPCVVYGGANVFEQMMDLDRGCHLLVATPGRLVDMLDRGKISLEQCKYLVLDEADRMLDMGFEPQIRKIVENDNMPPAGQRQTLMFSATFPKEIQMLARDFLANYIFLAVGRVGSTSENITQKIVWVDELDKRSFLLDLLEAAGLAKGPAGNEDSSLTLVFVETRKGADQLDEYLYKEGFPVTSIHGDRTQREREDALRRFRSGNTPILVATAVAARGLDIPNVKHVINFDLPSDVEEYVHRIGRTGRMGNLGLATSFFN 551 HSP 2 Score: 166.392 bits (420), Expect = 1.135e-43 Identity = 92/240 (38.33%), Postives = 140/240 (58.33%), Query Frame = 0 Query: 441 GTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILK---LLPS-KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQ----------QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 664 G +LVATPGRL+D++ I L++ K LVLDEADRML +GF ++ I++ + P+ ++QTL+FSATFP++++ L + L + I V + + + Q++ V++ K + L L++ + L+FV + + L + LYK G HGD+ Q R L F+SG +L+AT +AARGLDI + VINFDLP +Y+HRIGR+GR G +GLA S + Sbjct: 312 GCHLLVATPGRLVDMLDRGKISLEQCKYLVLDEADRMLDMGFEPQIRKIVENDNMPPAGQRQTLMFSATFPKEIQMLARDFLANYIFLAVGRVGSTSENITQKIVWVDELDKRSFLLDLLEAAGLAKGPAGNEDSSLTLVFVETRKGADQLDEYLYKEGFPVTSIHGDRTQREREDALRRFRSGNTPILVATAVAARGLDIPNVKHVINFDLPSDVEEYVHRIGRTGRMGNLGLATSFFN 551
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000007141 (supercontig:LSalAtl2s:LSalAtl2s402:374905:376772:1 gene:EMLSAG00000007141 transcript:EMLSAT00000007141 description:"maker-LSalAtl2s402-augustus-gene-4.12") HSP 1 Score: 187.578 bits (475), Expect = 6.082e-53 Identity = 126/443 (28.44%), Postives = 210/443 (47.40%), Query Frame = 0 Query: 10 PTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWR--------------QALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPL 438 PT F +GL L+ + +++P+ IQ + I +L GRD+IA A +G+GKTA F++ +LQ I D + L+L PTRELA Q+ + + + N ++ GG ++ ++ L G ++ TP +V D ++ + G +K LVLDEAD ML+ GF E++ + + LP Q L SAT P ++ +T + + DPI + LV+R +G K +A +++ +W+ QA+IF N K + L +K+ + HGD Q R I+++F+SG+ VLI TD+ ARG+D++++ +VIN+DLP + Y+HRIGRSGR G G+A++ + ++D + IE+ ++D + Sbjct: 28 PT-FDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQSI--DTTMRE-------TQCLVLSPTRELAVQIQKVLLALGDYMN--VQCHACIGGTNLGEDIRKLDYGQHVVSGTP-------GRVYDMIRRRTLRTRG-----------------------------------------------IKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQIALISATLPHEILEMTSKFMADPIRI---------LVKRDELTLEGXKQFFVA--VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 393 HSP 2 Score: 161.384 bits (407), Expect = 1.151e-43 Identity = 87/250 (34.80%), Postives = 139/250 (55.60%), Query Frame = 0 Query: 441 GTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWR--------------QALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEK 676 G ++ TPGR+ D+I ++ +K LVLDEAD ML+ GF E++ + + LP Q L SAT P ++ +T + + DPI + LV+R +G K +A +++ EW+ QA+IF N K + L +K+ + HGD Q R I+++F+SG+ VLI TD+ ARG+D++++ +VIN+DLP + Y+HRIGRSGR G G+A++ + ++D IE+ Sbjct: 146 GQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQIALISATLPHEILEMTSKFMADPIRI---------LVKRDELTLEGXKQFFVA--VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIEQ 384
BLAST of rna helicase vs. SwissProt
Match: gi|548730|sp|P25888.3|RHLE_ECOLI (RecName: Full=ATP-dependent RNA helicase RhlE) HSP 1 Score: 308.145 bits (788), Expect = 5.081e-96 Identity = 176/421 (41.81%), Postives = 247/421 (58.67%), Query Frame = 0 Query: 12 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNF-VSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEK 429 +F LGL ++ + E Y++PTPIQ Q IP+VL GRDL+A A TG+GKTA F LPLLQ + P KG V LIL PTRELA Q+ ++V+ Y+ + N I+++ VFGGVS+N QM LRGG D+LVATP +L Q ++VK V +++ R+LD+ GF ++ +L LP+K+Q LLFSATF + +K L +LL++P+E+++ N ++ + Q V V+K RK LL+H+I + W+Q L+F K+ HLA++L K GI + HG+K QG+RTR L DFKSG+I VL+ATDIAARGLDIE+LP V+N++LP P DY+HRIGR+GRA G ALSL+ +++ + IEK Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQP----HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN--IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEI---------------------------LVLDEADRMLDM-------------------------GFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEK 362 HSP 2 Score: 270.011 bits (689), Expect = 1.450e-81 Identity = 135/258 (52.33%), Postives = 183/258 (70.93%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVD 693 LRGG D+LVATPGRLLDL NA+KLD+V+ LVLDEADRML +GF ++ +L LP+K+Q LLFSATF + +K L +LL++P+E+++ N ++ + Q V V+K RK LL+H+I + W+Q L+F K+ HLA++L K GI + HG+K QG+RTR L DFKSG+I VL+ATDIAARGLDIE+LP V+N++LP P DY+HRIGR+GRA G ALSL+ +++ IEK K + R I G+E D Sbjct: 122 LRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPD 379
BLAST of rna helicase vs. SwissProt
Match: gi|32171494|sp|Q8XA87.3|DEAD_ECO57 (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A) HSP 1 Score: 265.774 bits (678), Expect = 4.828e-78 Identity = 154/427 (36.07%), Postives = 233/427 (54.57%), Query Frame = 0 Query: 11 TNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHED--APLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKI 433 T F+DLGL +P++ L +L Y++P+PIQA+ IP +L GRD++ A TGSGKTAAF+LPLLQ + + AP L+L PTRELA QVA+++ ++ H G + V ++GG + Q++ALR G I+V TP ++ D +K RG D L K+ LVLDEAD ML +GF E+++ I+ +P QT LFSAT PE ++ +T + +P EV++QS+ + + Q + V RK L ++ + A+IFV KN+ +A+ L + G + +GD Q R + LE K G +D+LIATD+AARGLD+E++ +V+N+D+P Y+HRIGR+GRAG G AL +++ + + IE+ K+ Sbjct: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAP-----------QILVLAPTRELAVQVAEAMTDFSKHMRG-VNVVALYGGQRYDVQLRALRQGPQIVVGTP-------GRLLDHLK----------------------------RGTLD-------------------LSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 HSP 2 Score: 197.593 bits (501), Expect = 3.524e-53 Identity = 99/254 (38.98%), Postives = 154/254 (60.63%), Query Frame = 0 Query: 429 KKNKIRLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKI 680 ++ ++L LR G I+V TPGRLLD + + L K+ LVLDEAD ML +GF E+++ I+ +P QT LFSAT PE ++ +T + +P EV++QS+ + + Q + V RK L ++ ++ A+IFV KN+ +A+ L + G + +GD Q R + LE K G +D+LIATD+AARGLD+E++ +V+N+D+P Y+HRIGR+GRAG G AL +++ + IE+ K+ Sbjct: 113 QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366
BLAST of rna helicase vs. SwissProt
Match: gi|71154182|sp|P0A9P7.2|DEAD_ECOL6 (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A >gi|71154193|sp|P0A9P6.2|DEAD_ECOLI RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A; AltName: Full=Translation factor W2 >gi|71154222|sp|P0A9P8.2|DEAD_SHIFL RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A) HSP 1 Score: 265.774 bits (678), Expect = 5.637e-78 Identity = 154/427 (36.07%), Postives = 233/427 (54.57%), Query Frame = 0 Query: 11 TNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHED--APLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKI 433 T F+DLGL +P++ L +L Y++P+PIQA+ IP +L GRD++ A TGSGKTAAF+LPLLQ + + AP L+L PTRELA QVA+++ ++ H G + V ++GG + Q++ALR G I+V TP ++ D +K RG D L K+ LVLDEAD ML +GF E+++ I+ +P QT LFSAT PE ++ +T + +P EV++QS+ + + Q + V RK L ++ + A+IFV KN+ +A+ L + G + +GD Q R + LE K G +D+LIATD+AARGLD+E++ +V+N+D+P Y+HRIGR+GRAG G AL +++ + + IE+ K+ Sbjct: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAP-----------QILVLAPTRELAVQVAEAMTDFSKHMRG-VNVVALYGGQRYDVQLRALRQGPQIVVGTP-------GRLLDHLK----------------------------RGTLD-------------------LSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 HSP 2 Score: 197.593 bits (501), Expect = 4.207e-53 Identity = 99/254 (38.98%), Postives = 154/254 (60.63%), Query Frame = 0 Query: 429 KKNKIRLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKI 680 ++ ++L LR G I+V TPGRLLD + + L K+ LVLDEAD ML +GF E+++ I+ +P QT LFSAT PE ++ +T + +P EV++QS+ + + Q + V RK L ++ ++ A+IFV KN+ +A+ L + G + +GD Q R + LE K G +D+LIATD+AARGLD+E++ +V+N+D+P Y+HRIGR+GRAG G AL +++ + IE+ K+ Sbjct: 113 QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366
BLAST of rna helicase vs. SwissProt
Match: gi|8928554|sp|P33906.3|DEAD_KLEPN (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A) HSP 1 Score: 265.003 bits (676), Expect = 1.187e-77 Identity = 154/427 (36.07%), Postives = 232/427 (54.33%), Query Frame = 0 Query: 11 TNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHED--APLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKI 433 T F+DLGL +P++ LT+L Y++P+PIQA+ IP +L GRD++ A TGSGKTAAF+LPLL I + AP L+L PTRELA QVA+++ ++ H G + V ++GG + Q++ALR G I+V TP ++ D +K RG D L K+ LVLDEAD ML +GF E+++ I+ +P QT LFSAT PE ++ +T + +P EV++QS+ + + Q + RK L ++ + A+IFV KN+ +A+ L + G + +GD Q R + LE K G +D+LIATD+AARGLD+E++ +V+N+D+P Y+HRIGR+GRAG G AL +++ + + IE+ K+ Sbjct: 6 TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAP-----------QILVLAPTRELAVQVAEAMTEFSKHMRG-VNVVALYGGQRYDVQLRALRQGPQIVVGTP-------GRLLDHLK----------------------------RGTLD-------------------LSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 HSP 2 Score: 195.667 bits (496), Expect = 1.962e-52 Identity = 98/254 (38.58%), Postives = 153/254 (60.24%), Query Frame = 0 Query: 429 KKNKIRLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKI 680 ++ ++L LR G I+V TPGRLLD + + L K+ LVLDEAD ML +GF E+++ I+ +P QT LFSAT PE ++ +T + +P EV++QS+ + + Q + RK L ++ ++ A+IFV KN+ +A+ L + G + +GD Q R + LE K G +D+LIATD+AARGLD+E++ +V+N+D+P Y+HRIGR+GRAG G AL +++ + IE+ K+ Sbjct: 113 QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366
BLAST of rna helicase vs. SwissProt
Match: gi|134039178|sp|P96614.2|CSHA_BACSU (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA) HSP 1 Score: 247.284 bits (630), Expect = 1.839e-72 Identity = 141/432 (32.64%), Postives = 226/432 (52.31%), Query Frame = 0 Query: 13 FSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPLRGGT 442 F D L S LM + + +++ TPIQAQ IP L+ +D+I A TG+GKTAAF +PL+++I+ ++P + +++ PTRELA QV++ + Y + + K + ++GG + Q++AL+ +I+V TP ++ D + + N V T+V+DEAD ML++GF +++++IL +PS+ QTLLFSAT P +K + + +P ++V+ + S + Q EV++ +K L L+ A++F K + LA+ L RG AE HGD Q R L FK G I+VL+ATD+AARGLDI + V NFD+P+ P Y+HRIGR+GRAG+ G+A++ I + + IE+ K ++D ++ T Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESP---------NIQAIVIAPTRELAIQVSEEL--YKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTP-------GRLLDHINRRTIRLNN-----------------------------------------------VNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPT 371 HSP 2 Score: 201.06 bits (510), Expect = 1.643e-55 Identity = 102/249 (40.96%), Postives = 153/249 (61.45%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLER 684 L+ +I+V TPGRLLD I+ I+L+ V T+V+DEAD ML++GF +++++IL +PS+ QTLLFSAT P +K + + +P ++V+ + S + Q EV++ +K L L+ A++F K + LA+ L RG AE HGD Q R L FK G I+VL+ATD+AARGLDI + V NFD+P+ P Y+HRIGR+GRAG+ G+A++ I + IE+ K +++R Sbjct: 118 LKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDR 366
BLAST of rna helicase vs. SwissProt
Match: gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA) HSP 1 Score: 243.817 bits (621), Expect = 1.383e-71 Identity = 141/432 (32.64%), Postives = 230/432 (53.24%), Query Frame = 0 Query: 11 TNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED---YHHFKIIEKKNKIRLDP 437 T F +LGL +M + + +++ TPIQA+ IP L +D+I A TG+GKTAAF +P+++++ + K + V L++ PTRELA QV++ + Y + ++ + ++GG + Q++AL+ ++V TP ++ D H N RG ++L+ V T+VLDEAD ML++GF E+++AIL +P+++QTLLFSAT P+ ++ + +N+P ++V+ + + Q EV + +K +L L+ A++F K + LA+ L RG AE HGD Q R +L FK G I++L+ATD+AARGLDI + V NFD+P+ P Y+HRIGR+GRAG+ G+A++ + + HH + K+ R+ P Sbjct: 2 TTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV---------NVKNSAVQALVVAPTRELAIQVSEEL--YKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTP-------GRIID-------HIN---------------------RG-------------------TLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKP 368 HSP 2 Score: 205.297 bits (521), Expect = 2.659e-57 Identity = 103/269 (38.29%), Postives = 162/269 (60.22%), Query Frame = 0 Query: 431 NKIRLDPLRGGTDI-------------LVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLER 684 ++R+ P+ GG DI +V TPGR++D I+ ++L+ V T+VLDEAD ML++GF E+++AIL +P+++QTLLFSAT P+ ++ + +N+P ++V+ + + Q EV + +K +L L+ A++F K + LA+ L RG AE HGD Q R +L FK G I++L+ATD+AARGLDI + V NFD+P+ P Y+HRIGR+GRAG+ G+A++ + + IE+ K ++ER Sbjct: 97 KRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMER 365
BLAST of rna helicase vs. SwissProt
Match: gi|75535255|sp|Q9Z6C9.1|CSHA_LACRE (RecName: Full=ATP-dependent RNA helicase CshA; AltName: Full=Autoaggregation-mediating protein) HSP 1 Score: 243.047 bits (619), Expect = 6.413e-71 Identity = 144/432 (33.33%), Postives = 226/432 (52.31%), Query Frame = 0 Query: 13 FSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST-LVQRVF-EVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPLRGGT 442 FS+LGL L+ + Y++ TPIQ Q IP VL G+D+I A TG+GKTAAF LP+++ + + P + +I+ PTRELA Q + + Y + + ++ V+GG + Q+++L+ ILV TP R+ H N + +KLD +KTLVLDEAD ML++GF E++++I+K P +QTLLFSAT P ++K + + ++DP V++++ +T LV + + K ++ LI ++F K + L+ L RG A HGD Q R++I+ FK+ E+D+L+ATD+AARGLDI + V N+D+P P Y+HRIGR+GRAG G++L+ + + + IEK ++R+ PL+ T Sbjct: 3 FSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENVDTENP---------NIQAIIISPTRELAIQTQEEL--YRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRLRD--------------HIN----------------------------------------RHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRVRMLPLKPPT 369 HSP 2 Score: 192.2 bits (487), Expect = 3.286e-52 Identity = 103/269 (38.29%), Postives = 160/269 (59.48%), Query Frame = 0 Query: 429 KKNKIRLDPLRGGTDI-------------LVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST-LVQRVF-EVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRL 682 K +R+ + GG DI LV TPGRL D I+ + +KLD +KTLVLDEAD ML++GF E++++I+K P +QTLLFSAT P ++K + + ++DP V++++ +T LV + + K ++ LI + ++F K + L+ L RG A HGD Q R++I+ FK+ E+D+L+ATD+AARGLDI + V N+D+P P Y+HRIGR+GRAG G++L+ + + + IEK ++R+ Sbjct: 94 KDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRVRM 362
BLAST of rna helicase vs. SwissProt
Match: gi|143456452|sp|Q0DB53.2|RH52A_ORYSJ (RecName: Full=DEAD-box ATP-dependent RNA helicase 52A) HSP 1 Score: 243.432 bits (620), Expect = 5.185e-70 Identity = 150/425 (35.29%), Postives = 225/425 (52.94%), Query Frame = 0 Query: 12 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLL--PSK--KQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQH---------QWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDY 421 F GL+ ++ + Y+ PTP+Q +P LAGRDL+A A TGSGKTAAF LP+ VSGL+ + + S FN A + +AL +L PTRELA Q+ + K ++ F ++ V +GG + Q++ L G DILVATPGRL+D++ + + L+ +K LV+DEADRML +GF ++ I++ + P K +QT+LFSATFP +++ L + L++ I + + +ST ++Q+V + G K L L+Q+ Q L+FV K + L LY +G A HGD+ Q R L FK+G +++ATD+A+RGLD+ + VIN+DLP+S DY+HRIGR+GRAG+ G A + D+ Sbjct: 85 GFEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPV-------------------VSGLVAAGGSGIGHRERSS-------FNRAA------------AKPRAL-----VLA----PTRELAAQINEEAKKFS--FQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDH 460 HSP 2 Score: 182.57 bits (462), Expect = 5.240e-48 Identity = 99/250 (39.60%), Postives = 150/250 (60.00%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLL--PSK--KQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQA---------LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDY 668 +L L G DILVATPGRL+D++ + + L+ +K LV+DEADRML +GF ++ I++ + P K +QT+LFSATFP +++ L + L++ I + + +ST ++Q+V + G K L L+Q+ A L+FV K + L LY +G A HGD+ Q R L FK+G +++ATD+A+RGLD+ + VIN+DLP+S DY+HRIGR+GRAG+ G A + D+ Sbjct: 211 QLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDH 460
BLAST of rna helicase vs. SwissProt
Match: gi|74660335|sp|Q6CLR3.1|DED1_KLULA (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 243.047 bits (619), Expect = 1.220e-69 Identity = 148/394 (37.56%), Postives = 204/394 (51.78%), Query Frame = 0 Query: 31 YQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL--LPS--KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDH 418 + +PTP+Q +P V AGRDL+A A TGSGKT F P+L + P GN SY IK V T +++A PTRELA Q+ D K + + +K + V+GG S++ Q++ +R G ++LVATPGRL DL+ I L VK LVLDEADRML +GF ++ I++ +PS +QTL+FSATFP +++ L + L D + V + + + Q++ VE K L L+ LIFV K + + L D L G A HGD+ QG R R L FK+G +L+AT +AARGLDI + VINFDLP DY+HRIGR+GRAG G+A + + Sbjct: 179 FTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESFSSGPASTPEAAGN----------------------SY-------IKKVYP----------------TAVILA---PTRELATQIYDEAKKFT--YRSWVKPMVVYGGASIDNQIKQMRYGCNLLVATPGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEGSDMPSVDNRQTLMFSATFPSEIQHLASDFLKDYVFLSVGRVGSTSENITQKILYVEDFDKNDTLLDLLAASNEGLTLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNR 522 HSP 2 Score: 182.956 bits (463), Expect = 5.506e-48 Identity = 101/234 (43.16%), Postives = 137/234 (58.55%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL--LPS--KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDH 665 +R G ++LVATPGRL DL+ I L VK LVLDEADRML +GF ++ I++ +PS +QTL+FSATFP +++ L + L D + V + + + Q++ VE K L L+ LIFV K + + L D L G A HGD+ QG R R L FK+G +L+AT +AARGLDI + VINFDLP DY+HRIGR+GRAG G+A + + Sbjct: 289 MRYGCNLLVATPGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEGSDMPSVDNRQTLMFSATFPSEIQHLASDFLKDYVFLSVGRVGSTSENITQKILYVEDFDKNDTLLDLLAASNEGLTLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNR 522
BLAST of rna helicase vs. SwissProt
Match: gi|122206897|sp|Q2R1M8.1|RH52C_ORYSJ (RecName: Full=DEAD-box ATP-dependent RNA helicase 52C) HSP 1 Score: 242.276 bits (617), Expect = 2.540e-69 Identity = 148/423 (34.99%), Postives = 218/423 (51.54%), Query Frame = 0 Query: 13 FSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLL----PSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHQWRQA---------LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 420 F+++ L L + +Y +PTP+Q IP LAGRDL+A A TGSGKTAAF P++ I P R P R G ++T C L+ +P TREL+ Q+ + + ++ + ++ V +GG +N Q++ L G DILVATPGRL+DL+ + L ++ L LDEADRML +GF ++ I++ + P +QT+LFSATFP++++ + + L + I + + +ST +VQRV V++ K + L L+ H R + L+FV K + L L G A HGD+ Q R L FKSG +L+ATD+AARGLDI + V+NFDLP DY+HRIGR+GRAG+ GLA + + + Sbjct: 157 FAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGPPAQR--------------PQR------------------GGMRTACPLA-----------------LILSP--TRELSMQIHEEARKFS--YQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLL--HAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENN 524 HSP 2 Score: 177.948 bits (450), Expect = 3.204e-46 Identity = 100/245 (40.82%), Postives = 143/245 (58.37%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLL----PSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQA---------LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 667 L G DILVATPGRL+DL+ + L ++ L LDEADRML +GF ++ I++ + P +QT+LFSATFP++++ + + L + I + + +ST +VQRV V++ K + L L+ H R + L+FV K + L L G A HGD+ Q R L FKSG +L+ATD+AARGLDI + V+NFDLP DY+HRIGR+GRAG+ GLA + + + Sbjct: 282 LERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLL--HAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENN 524
BLAST of rna helicase vs. nr
Match: gi|1198849907|ref|WP_086967997.1| (ATP-dependent helicase [Vibrio sp. Vb150]) HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0 Identity = 365/433 (84.30%), Postives = 373/433 (86.14%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARL+ELEYQQPTPIQAQVIPSVL GRDLIAGANTGSGKTAAFALPLLQ+IHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRL+ Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLSELEYQQPTPIQAQVIPSVLVGRDLIAGANTGSGKTAAFALPLLQKIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLE 379 HSP 2 Score: 587.415 bits (1513), Expect = 0.000e+0 Identity = 289/300 (96.33%), Postives = 294/300 (98.00%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTG-KKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRLEREQIEGFEVDEEATA L+AALKPVAPPAGTG KKKKKKAP+NQDVWL +N Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLEREQIEGFEVDEEATAELIAALKPVAPPAGTGKKKKKKKAPQNQDVWLNSN 429
BLAST of rna helicase vs. nr
Match: gi|1197769754|ref|WP_086713934.1| (ATP-dependent helicase [Vibrio gigantis]) HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0 Identity = 366/433 (84.53%), Postives = 373/433 (86.14%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQV+TLTHELL DPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRL+ Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVQTLTHELLTDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLE 379 HSP 2 Score: 570.852 bits (1470), Expect = 0.000e+0 Identity = 288/300 (96.00%), Postives = 292/300 (97.33%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTG-KKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQV+TLTHELL DPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRLEREQIEGFEVDEEATA L+AALKPVAPPAGTG KKKKKKA NQDVWLRNN Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVQTLTHELLTDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLEREQIEGFEVDEEATAELIAALKPVAPPAGTGKKKKKKKAQTNQDVWLRNN 429
BLAST of rna helicase vs. nr
Match: gi|1149104630|ref|WP_077681483.1| (ATP-dependent helicase [Vibrio toranzoniae]) HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0 Identity = 365/433 (84.30%), Postives = 373/433 (86.14%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARL+ELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ+IHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+ Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLSELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQKIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLE 379 HSP 2 Score: 588.571 bits (1516), Expect = 0.000e+0 Identity = 291/300 (97.00%), Postives = 293/300 (97.67%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTG-KKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATA LVAALKPVAPPAGTG KKKKKKA NQDVWL NN Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAELVAALKPVAPPAGTGKKKKKKKAQTNQDVWLNNN 429
BLAST of rna helicase vs. nr
Match: gi|1046214760|ref|WP_065607149.1| (ATP-dependent helicase [Vibrio splendidus] >gi|1045785323|gb|OCH63448.1| RNA helicase [Vibrio splendidus]) HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0 Identity = 365/433 (84.30%), Postives = 373/433 (86.14%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTP+QAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRR+GKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+ Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPVQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRAGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLE 379 HSP 2 Score: 600.127 bits (1546), Expect = 0.000e+0 Identity = 294/299 (98.33%), Postives = 296/299 (99.00%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATA LVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAELVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 428
BLAST of rna helicase vs. nr
Match: gi|752844092|ref|WP_041473103.1| (ATP-dependent helicase [Vibrio tasmaniensis]) HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0 Identity = 365/433 (84.30%), Postives = 373/433 (86.14%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGN+VSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGR+GEVGLALSLIDHEDYHHF IIEKKNKIRL+ Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLIDHEDYHHFTIIEKKNKIRLE 379 HSP 2 Score: 601.668 bits (1550), Expect = 0.000e+0 Identity = 294/299 (98.33%), Postives = 297/299 (99.33%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGR+GEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 428 The following BLAST results are available for this feature:
BLAST of rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
Pagesback to top
BLAST of rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold554_size137761:74928..77387+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold554_size137761-snap-gene-0.2 ID=maker-scaffold554_size137761-snap-gene-0.2|Name=rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=2460bp|location=Sequence derived from alignment at scaffold554_size137761:74928..77387+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'rna helicase' has the following synonyms
Add to Basket
|