rna helicase, maker-scaffold554_size137761-snap-gene-0.2 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000010143 (supercontig:LSalAtl2s:LSalAtl2s66:712270:714003:-1 gene:EMLSAG00000010143 transcript:EMLSAT00000010143 description:"augustus_masked-LSalAtl2s66-processed-gene-7.1") HSP 1 Score: 214.927 bits (546), Expect = 6.826e-62 Identity = 140/406 (34.48%), Postives = 207/406 (50.99%), Query Frame = 0 Query: 23 MARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDA---PLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQS---ANASTLVQRVF--EVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 420 M + + ++ P+PIQ Q P +L G DLI A TG+GKT AF LP IH D+ P ++R G + L+L PTRELA Q+AD VK Y + G IK+VCV+GG Q++ + G I++ATP N I++ C I ++ + LVLDEADRML +GF ++ IL + +QT++ SAT+P V+ L + DPI V + S A ++ Q++F E E+ + LL +A+IF++ K + + L G+ + HG + Q R + L DFK G + +LIATD+A+RG+D+E + VINFD P S +Y+HRIGRSGRAG+ G ++S + + D Sbjct: 1 MTAIQKRGFKNPSPIQCQAWPYLLKGLDLIGIAQTGTGKTLAFLLPSF--IHIDSQSIPREKRGGP----NVLVLSPTRELALQIADEVKKY--EYRG-IKSVCVYGGGDRKAQVKVVTQGVQIVIATP------------------GRLNDLIESGC------------------------------------IAVESITYLVLDEADRMLDMGFEPQIRKILLDVRPDRQTVMTSATWPPGVRRLASNYMKDPITVSIGSLDLAAVHSVTQKIFVVESEEEKDDRLLDFFNNMTPEDKAIIFMSKKAKVDDYSSSLCLAGVDCQSIHGGRDQMDREQALLDFKLGHVRILIATDVASRGIDVEDISHVINFDFPNSMEEYVHRIGRSGRAGKKGSSISFMTYRD 343 HSP 2 Score: 172.17 bits (435), Expect = 1.420e-46 Identity = 93/232 (40.09%), Postives = 139/232 (59.91%), Query Frame = 0 Query: 441 GTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQS---ANASTLVQRVF--EVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 667 G I++ATPGRL DLI S I ++ + LVLDEADRML +GF ++ IL + +QT++ SAT+P V+ L + DPI V + S A ++ Q++F E E+ + LL +A+IF++ K + + L G+ + HG + Q R + L DFK G + +LIATD+A+RG+D+E + VINFD P S +Y+HRIGRSGRAG+ G ++S + + D Sbjct: 112 GVQIVIATPGRLNDLIESGCIAVESITYLVLDEADRMLDMGFEPQIRKILLDVRPDRQTVMTSATWPPGVRRLASNYMKDPITVSIGSLDLAAVHSVTQKIFVVESEEEKDDRLLDFFNNMTPEDKAIIFMSKKAKVDDYSSSLCLAGVDCQSIHGGRDQMDREQALLDFKLGHVRILIATDVASRGIDVEDISHVINFDFPNSMEEYVHRIGRSGRAGKKGSSISFMTYRD 343
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000004918 (supercontig:LSalAtl2s:LSalAtl2s259:1039310:1040989:-1 gene:EMLSAG00000004918 transcript:EMLSAT00000004918 description:"maker-LSalAtl2s259-augustus-gene-10.16") HSP 1 Score: 213.001 bits (541), Expect = 4.481e-61 Identity = 145/394 (36.80%), Postives = 206/394 (52.28%), Query Frame = 0 Query: 31 YQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKG--NFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCV-FGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEV--EKGRKTALLAHLIQQHQWR-QALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 416 ++ PTPIQ+ P V +GRD+I A TGSGKT AF++P L I E +R KG + LI+ PTRELA Q ++S K++CV+GGV+ Q Q+L+ G +ILVATP +LA++ CV GVS +VLDEADRML GF +++ IL ++QT LFSAT+P+ ++ L HE L PI+V + S + A V ++ EV E+ R + L + H+ + + LIFV K + L + L K HGDK Q +R + +E+FKSG+I +LIATD+AARGLDI + V+N+ P + DY+HRIGR+GRAG+ G+A + Sbjct: 128 FKAPTPIQSMTWPVVASGRDVIGIAETGSGKTLAFSVPALAHISERK---QRPVKGVNSMPIMLIVAPTRELAMQSQVVLESAGKEI--GFKSLCVYGGVNKYAQRQSLKSGVEILVATPGRLLDLAEE------------------GCVDLSGVSY-------------------------------------VVLDEADRMLDQGFEQDIRRILGQTHKERQTCLFSATWPDSIRKLAHEFLKSPIKVTIGSEDLAAGKTVTQIVEVVDERSRDGKIKGLLNKYHKKKNRILIFVLYKREADRLWNSL-KHEWNCTTIHGDKSQDARIQAVENFKSGKIPILIATDVAARGLDIPDVEYVLNYSFPLTIEDYVHRIGRTGRAGKSGIAHTFF 460 HSP 2 Score: 181.415 bits (459), Expect = 1.222e-49 Identity = 101/231 (43.72%), Postives = 143/231 (61.90%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEV--EKGRKTALLAHLIQQHEWR-QALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 663 L+ G +ILVATPGRLLDL + L V +VLDEADRML GF +++ IL ++QT LFSAT+P+ ++ L HE L PI+V + S + A V ++ EV E+ R + L + H+ + + LIFV K + L + L K HGDK Q +R + +E+FKSG+I +LIATD+AARGLDI + V+N+ P + DY+HRIGR+GRAG+ G+A + Sbjct: 231 LKSGVEILVATPGRLLDLAEEGCVDLSGVSYVVLDEADRMLDQGFEQDIRRILGQTHKERQTCLFSATWPDSIRKLAHEFLKSPIKVTIGSEDLAAGKTVTQIVEVVDERSRDGKIKGLLNKYHKKKNRILIFVLYKREADRLWNSL-KHEWNCTTIHGDKSQDARIQAVENFKSGKIPILIATDVAARGLDIPDVEYVLNYSFPLTIEDYVHRIGRTGRAGKSGIAHTFF 460
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000011390 (supercontig:LSalAtl2s:LSalAtl2s787:174367:180499:1 gene:EMLSAG00000011390 transcript:EMLSAT00000011390 description:"augustus_masked-LSalAtl2s787-processed-gene-0.30") HSP 1 Score: 216.083 bits (549), Expect = 9.991e-60 Identity = 137/416 (32.93%), Postives = 213/416 (51.20%), Query Frame = 0 Query: 12 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQL--QSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQ-ALIFVNAKNSCEHLADKLYKRGIIAEV-----FHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 419 N++ G+ ++ L Y++PTPIQ Q IP +++GRD+I A TGSGKT AF LPL + I L+ +G+ +I+ PTREL Q+ +K ++ GA ++VCV+GG ++ Q+ L+ G +I+V TP G + D+L A GR+ + ++ +VLDEADRM +GF ++ I+ KQ ++FSATFP Q++ L +L P+EV + +S + Q V+ +E+ K L L+ Q +IFV+ + EH AD L K + A HG Q R I+ +FK+G++ +L+AT +AARGLD+++L +V+N+D P DY+HR GR+GRAG G A + + E Sbjct: 223 NWTHAGVSQRILDLLKRNGYEKPTPIQTQAIPIIMSGRDMIGIAKTGSGKTLAFLLPLFRHIMAQPELE----EGDGPIAIIMTPTRELCMQIGKEIKKFSKAIKGA-RSVCVYGGTGISEQIAELKRGAEIIVCTP----------------------GRM---------------------IDMLAANSGRVTN--------CRRITYVVLDEADRMFDMGFEPQVSRIIDNCRPDKQMVMFSATFPRQMEALARRILCKPVEVTVGGRSVVCKDIDQSVYVLEEEHKFLKLLELLGQRSSEGLIIIFVDKQ---EH-ADSLLKDLMSASYTSCASLHGGVDQYDRDSIITNFKNGKVKILVATSVAARGLDVKELVLVVNYDCPNHYEDYVHRCGRTGRAGNSGFAATFLTPE 578 HSP 2 Score: 154.066 bits (388), Expect = 6.300e-39 Identity = 88/240 (36.67%), Postives = 142/240 (59.17%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLD---KVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQL--QSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQ-ALIFVNAKNSCEHLADKLYKRGIIAEV-----FHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 666 L+ G +I+V TPGR++D++++N+ ++ ++ +VLDEADRM +GF ++ I+ KQ ++FSATFP Q++ L +L P+EV + +S + Q V+ +E+ K L L+ Q +IFV+ + EH AD L K + A HG Q R I+ +FK+G++ +L+AT +AARGLD+++L +V+N+D P DY+HR GR+GRAG G A + + E Sbjct: 343 LKRGAEIIVCTPGRMIDMLAANSGRVTNCRRITYVVLDEADRMFDMGFEPQVSRIIDNCRPDKQMVMFSATFPRQMEALARRILCKPVEVTVGGRSVVCKDIDQSVYVLEEEHKFLKLLELLGQRSSEGLIIIFVDKQ---EH-ADSLLKDLMSASYTSCASLHGGVDQYDRDSIITNFKNGKVKILVATSVAARGLDVKELVLVVNYDCPNHYEDYVHRCGRTGRAGNSGFAATFLTPE 578
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000000395 (supercontig:LSalAtl2s:LSalAtl2s1063:103535:105763:1 gene:EMLSAG00000000395 transcript:EMLSAT00000000395 description:"augustus_masked-LSalAtl2s1063-processed-gene-0.12") HSP 1 Score: 206.838 bits (525), Expect = 3.509e-57 Identity = 153/462 (33.12%), Postives = 217/462 (46.97%), Query Frame = 0 Query: 12 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSN-AIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEVEKGRKT---ALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPLRGGTDILVATPGRLLDLISSNAIKLDKVK 467 +F + L PL+ + L Y PTPIQA IP LAGRD+ A TG+GKTA + LP+L++ L+ P N +I V V VPTREL QV K + F +I GG+ + Q ALR DI++ATPGRL+D I + L+ ++ L+LDEADRML F E++ I+K K+QTLLFSAT ++V L+ L P+++ + S A L Q + R++ +LA L+ + ++F+ K C L L G+ HG+ Q R L+ FK EIDVLI TD+AARGLDI + VIN+ LP + Y+HR+GR+ RAG G ++S+ D + I K + DP++ T P D+IS KL+ V+ Sbjct: 183 SFYAMXLSRPLLKAIEXLRYVHPTPIQASTIPVALAGRDVCGCAATGTGKTAXYMLPILER-------------------LLFRP-------------------NQSITRVIVL-----------------------VPTRELGVQVYQVSKQLS-QFT-SIDIALSVGGLDLKAQELALRKNPDIVIATPGRLIDHIKNTPTFGLENIEVLILDEADRMLDECFLEQMKEIVKSCSPKRQTLLFSATMTDKVNDLSTMALRKPVKIFVDSNKVVAWNLRQEFVRIRANRESDREGILAALVCRTFRDHTIVFIQTKVQCHRLLILLSLLGVRVGELHGNLSQPQRLESLKKFKEEEIDVLITTDVAARGLDISGVKTVINYTLPTTLEHYIHRVGRTARAGRAGRSVSIAGEGDRKMVREIVKNAR---DPVKART-----VPQ---DIISKYVQKLESVR 570 HSP 2 Score: 154.451 bits (389), Expect = 2.424e-39 Identity = 90/231 (38.96%), Postives = 131/231 (56.71%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSN-AIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEVEKGRKT---ALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSL 662 LR DI++ATPGRL+D I + L+ ++ L+LDEADRML F E++ I+K K+QTLLFSAT ++V L+ L P+++ + S A L Q + R++ +LA L+ + ++F+ K C L L G+ HG+ Q R L+ FK EIDVLI TD+AARGLDI + VIN+ LP + Y+HR+GR+ RAG G ++S+ Sbjct: 299 LRKNPDIVIATPGRLIDHIKNTPTFGLENIEVLILDEADRMLDECFLEQMKEIVKSCSPKRQTLLFSATMTDKVNDLSTMALRKPVKIFVDSNKVVAWNLRQEFVRIRANRESDREGILAALVCRTFRDHTIVFIQTKVQCHRLLILLSLLGVRVGELHGNLSQPQRLESLKKFKEEEIDVLITTDVAARGLDISGVKTVINYTLPTTLEHYIHRVGRTARAGRAGRSVSI 529
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000008048 (supercontig:LSalAtl2s:LSalAtl2s479:213954:217803:1 gene:EMLSAG00000008048 transcript:EMLSAT00000008048 description:"maker-LSalAtl2s479-augustus-gene-2.18") HSP 1 Score: 201.445 bits (511), Expect = 3.458e-55 Identity = 145/447 (32.44%), Postives = 207/447 (46.31%), Query Frame = 0 Query: 6 NTTTPTNFSDLGLISPLMARLTE-LEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLP----------------------SK---KQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF 424 N P +SP + + E + Y +PTPIQ Q IP L RD+I A TGSGKT AF LP +LV + L K T+M+ G ++ PTRELA+Q+ + ++ I TV V GG+S Q LR G +I++ATPGRL+D++ + + L + +VLDEADRM+ +GF ++ IL +P SK +QT++F+AT P V+ L L P V + S + Q V+ +++ K L ++ +IFVN K + LA L K G A HG KGQ R L K+G D+L+ATD+A RG+DI+ + +VIN+D+ +S Y HRIGR+GRAG+ G A+S ED F Sbjct: 318 NIPHPIRKWKEACLSPEILEIIEKVGYTEPTPIQRQAIPIGLQNRDIIGVAETGSGKTCAFLLP------------------------LLVWIQSLPK----------------------------TTRMEDQDQGPYAIIM--APTRELAQQIEEECNTFGGPL--GIXTVAVIGGLSREDQGFKLRLGCEIVIATPGRLIDVLENRYLVLSRCTYIVLDEADRMIDMGFEPDVQKILDHMPVTNAKPDNDEAENEAALLENIRSKNKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIGRPVERVEQVVYMMKENDKRNKLISILNNGIEPPIIIFVNQKKGADKLAQGLEKMGYNAATLHGGKGQEQREYALSGLKAGNKDILVATDVAGRGIDIKNVSLVINYDMAKSIEPYTHRIGRTGRAGKSGKAISFCTQEDSPLF 708 HSP 2 Score: 154.451 bits (389), Expect = 2.700e-39 Identity = 94/261 (36.02%), Postives = 138/261 (52.87%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLP----------------------SK---KQTLLFSATFPEQVKTLTHELLNDPIEVQLQSAN--ASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF 671 LR G +I++ATPGRL+D++ + + L + +VLDEADRM+ +GF ++ IL +P SK +QT++F+AT P V+ L L P V + S + Q V+ +++ K L ++ +IFVN K + LA L K G A HG KGQ R L K+G D+L+ATD+A RG+DI+ + +VIN+D+ +S Y HRIGR+GRAG+ G A+S ED F Sbjct: 448 LRLGCEIVIATPGRLIDVLENRYLVLSRCTYIVLDEADRMIDMGFEPDVQKILDHMPVTNAKPDNDEAENEAALLENIRSKNKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIGRPVERVEQVVYMMKENDKRNKLISILNNGIEPPIIIFVNQKKGADKLAQGLEKMGYNAATLHGGKGQEQREYALSGLKAGNKDILVATDVAGRGIDIKNVSLVINYDMAKSIEPYTHRIGRTGRAGKSGKAISFCTQEDSPLF 708
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000011452 (supercontig:LSalAtl2s:LSalAtl2s790:154718:161369:1 gene:EMLSAG00000011452 transcript:EMLSAT00000011452 description:"maker-LSalAtl2s790-augustus-gene-1.30") HSP 1 Score: 200.675 bits (509), Expect = 6.113e-55 Identity = 134/383 (34.99%), Postives = 204/383 (53.26%), Query Frame = 0 Query: 117 GAIKTVCVFGGVSVNTQMQ-ALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEV-QLQSANASTLVQRVFEV-EKG--RKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDY----HHFKIIEKKNKIRLDPLRGGTDILVATPGRLLDL-ISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAI 489 G+ KT + ++ Q Q L G + VPTRELA Q+ K + ++ + VC +GG S Q + G +I +ATPGR++D+I L +V LVLDEADRM +GF ++ +I + +QTLLFSATF ++V+ L ++L DPI+V Q AS V ++ +V EKG + +L +L++ LIFV K +CE LA L + E+ HGD Q R I+ FK + +L+ATD+AARGLDI + V+N+D+ R + HRIGR+GRAG G A +L+ +D H + +E+ N+ D+ P L+DL + S+ K + K + + + LGF E +D++ Sbjct: 323 GSGKTATFLWPIIIHIQHQRPLLNGEGPIALILVPTRELALQIYTEAKKFGKVYD--LNAVCAYGGGSKWEQSKCFESGAEIAIATPGRMIDMIKMKVTNLQRVTYLVLDEADRMFDMGFEAQVRSICDHVRPDRQTLLFSATFKKKVEKLARDVLTDPIKVVQGSIGEASEDVTQIVKVLEKGGYKWEWVLQNLVEFTSAGSVLIFVTKKLNCEELAQNLKLKEFECELIHGDLNQHVRNEIIYKFKKKQFPILVATDVAARGLDIPHIRTVLNYDIARDIDTHTHRIGRTGRAGIKGTAYTLVTEKDKEFAGHIVRNLEQANQ----------DV----PKELMDLAMQSSWFKNSRFKK---GKMGKTVGLGFKESVDSL 686 HSP 2 Score: 170.244 bits (430), Expect = 1.363e-44 Identity = 96/234 (41.03%), Postives = 139/234 (59.40%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEV-QLQSANASTLVQRVFEV-EKG--RKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 667 G +I +ATPGR++D+I L +V LVLDEADRM +GF ++ +I + +QTLLFSATF ++V+ L ++L DPI+V Q AS V ++ +V EKG + +L +L++ LIFV K +CE LA L + E+ HGD Q R I+ FK + +L+ATD+AARGLDI + V+N+D+ R + HRIGR+GRAG G A +L+ +D Sbjct: 396 FESGAEIAIATPGRMIDMIKMKVTNLQRVTYLVLDEADRMFDMGFEAQVRSICDHVRPDRQTLLFSATFKKKVEKLARDVLTDPIKVVQGSIGEASEDVTQIVKVLEKGGYKWEWVLQNLVEFTSAGSVLIFVTKKLNCEELAQNLKLKEFECELIHGDLNQHVRNEIIYKFKKKQFPILVATDVAARGLDIPHIRTVLNYDIARDIDTHTHRIGRTGRAGIKGTAYTLVTEKD 629
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000002581 (supercontig:LSalAtl2s:LSalAtl2s151:1305107:1306803:-1 gene:EMLSAG00000002581 transcript:EMLSAT00000002581 description:"maker-LSalAtl2s151-snap-gene-13.39") HSP 1 Score: 194.897 bits (494), Expect = 1.195e-54 Identity = 104/276 (37.68%), Postives = 165/276 (59.78%), Query Frame = 0 Query: 150 PTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELL--NDPIEVQLQSAN--ASTLVQRVFE-VEKGRKTALLAHLIQ---QHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 417 PTRELA+Q+ + V +A I T C+ GG Q++ L G +I+VATPGRL+DL+ + L + +VLDEADRML +GF ++ I++ + +Q L++SAT+P +V++L H+ D V + S+ A+ L+ + F+ E+ K + +++ + + ++ LIF K + L KL + + HGDK Q RTR L+ F+SG I++L+ATD+A+RGLD+ + VVIN+D P + DY+HRIGR+GR + G + S D Sbjct: 160 PTRELAEQIHNVVDGFA----SKIPTACLVGGNHKQGQIRDLNRGAEIVVATPGRLIDLMEDGDVDLKRCSYMVLDEADRMLDMGFEPQIRKIMRQVRPDRQLLMWSATWPSEVQSLAHDFFGGTDYAHVNIGSSELXANKLIMQDFKFCERFEKMDSIKEILESLSEVESKKVLIFAATKIRVDQLVRKLKYWNFVVDGIHGDKTQAMRTRALDKFRSGRINILVATDVASRGLDVNDIKVVINYDFPNNIEDYVHRIGRTGRCSKEGKSFSFFD 431 HSP 2 Score: 172.94 bits (437), Expect = 8.579e-47 Identity = 93/244 (38.11%), Postives = 148/244 (60.66%), Query Frame = 0 Query: 429 KKNKIRLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELL--NDPIEVQLQSAN--ASTLVQRVFE-VEKGRKTALLAHLIQ---QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 664 K+ +IR L G +I+VATPGRL+DL+ + L + +VLDEADRML +GF ++ I++ + +Q L++SAT+P +V++L H+ D V + S+ A+ L+ + F+ E+ K + +++ + E ++ LIF K + L KL + + HGDK Q RTR L+ F+SG I++L+ATD+A+RGLD+ + VVIN+D P + DY+HRIGR+GR + G + S D Sbjct: 190 KQGQIR--DLNRGAEIVVATPGRLIDLMEDGDVDLKRCSYMVLDEADRMLDMGFEPQIRKIMRQVRPDRQLLMWSATWPSEVQSLAHDFFGGTDYAHVNIGSSELXANKLIMQDFKFCERFEKMDSIKEILESLSEVESKKVLIFAATKIRVDQLVRKLKYWNFVVDGIHGDKTQAMRTRALDKFRSGRINILVATDVASRGLDVNDIKVVINYDFPNNIEDYVHRIGRTGRCSKEGKSFSFFD 431
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000000249 (supercontig:LSalAtl2s:LSalAtl2s1036:82728:88820:1 gene:EMLSAG00000000249 transcript:EMLSAT00000000249 description:"maker-LSalAtl2s1036-augustus-gene-0.32") HSP 1 Score: 192.2 bits (487), Expect = 2.384e-54 Identity = 126/432 (29.17%), Postives = 199/432 (46.06%), Query Frame = 0 Query: 8 TTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSA-NASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPL 438 T F D L + + E +++P+PIQ IP L+GRD++A A G+GKT A+++P+L+QI + + G+I+VPTRELA Q + + H N +K + GG ++ + + ++VATP +L ++ V + K +C LDEAD++L F LD +++ LP ++Q LL SATFP V+ + P EV L + Q V++ +K L L + Q Q++IF N+ E LA K+ + G H Q R R+ DF++G L+ +D+ RG+DI+ + VVINFD P+ Y+HRIGRSGR G +G+A++LI ++D IE + + P+ Sbjct: 48 TKGNEFEDFCLKRETLMGIFEKGWEKPSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPILEQI---------DPSNDVIQGMIIVPTRELALQTSQICIELSKHRN--VKVMVTTGGTNLKEDIMRIYEKVHLVVATPGRILDLIEKGVAKVMN--------CKVIC----------------------------------------------LDEADKLLGHDFKGMLDRLIEHLPERRQILLXSATFPLTVEYFMKRHMKSPYEVNLMDELTLKGITQYYAFVQERQKVHCLNTLFTKLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHAKMAQTHRNRVFHDFRAGLCRNLVCSDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDDRFLLHRIEGELGTEIKPI 414 HSP 2 Score: 162.54 bits (410), Expect = 1.031e-43 Identity = 85/225 (37.78%), Postives = 127/225 (56.44%), Query Frame = 0 Query: 444 ILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSA-NASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 667 ++VATPGR+LDLI K+ K + LDEAD++L F LD +++ LP ++Q LL SATFP V+ + P EV L + Q V++ +K L L + + Q++IF N+ E LA K+ + G H Q R R+ DF++G L+ +D+ RG+DI+ + VVINFD P+ Y+HRIGRSGR G +G+A++LI ++D Sbjct: 172 LVVATPGRILDLIEKGVAKVMNCKVICLDEADKLLGHDFKGMLDRLIEHLPERRQILLXSATFPLTVEYFMKRHMKSPYEVNLMDELTLKGITQYYAFVQERQKVHCLNTLFTKLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHAKMAQTHRNRVFHDFRAGLCRNLVCSDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDD 396
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000005110 (supercontig:LSalAtl2s:LSalAtl2s26:913218:916036:-1 gene:EMLSAG00000005110 transcript:EMLSAT00000005110 description:"maker-LSalAtl2s26-augustus-gene-8.40") HSP 1 Score: 194.512 bits (493), Expect = 1.923e-53 Identity = 109/285 (38.25%), Postives = 164/285 (57.54%), Query Frame = 0 Query: 149 VPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILK---LLPS-KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQA----------LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 417 PTRELA Q+ D K +A + ++ V+GG +V QM L G +LVATPGRL+D++ I L++ K LVLDEADRML +GF ++ I++ + P+ ++QTL+FSATFP++++ L + L + I V + + + Q++ V++ K + L L++ + L+FV + + L + LYK G HGD+ Q R L F+SG +L+AT +AARGLDI + VINFDLP +Y+HRIGR+GR G +GLA S + Sbjct: 269 APTRELATQIFDEAKKFA--YRSLVQPCVVYGGANVFEQMMDLDRGCHLLVATPGRLVDMLDRGKISLEQCKYLVLDEADRMLDMGFEPQIRKIVENDNMPPAGQRQTLMFSATFPKEIQMLARDFLANYIFLAVGRVGSTSENITQKIVWVDELDKRSFLLDLLEAAGLAKGPAGNEDSSLTLVFVETRKGADQLDEYLYKEGFPVTSIHGDRTQREREDALRRFRSGNTPILVATAVAARGLDIPNVKHVINFDLPSDVEEYVHRIGRTGRMGNLGLATSFFN 551 HSP 2 Score: 166.392 bits (420), Expect = 1.135e-43 Identity = 92/240 (38.33%), Postives = 140/240 (58.33%), Query Frame = 0 Query: 441 GTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILK---LLPS-KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQ----------QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 664 G +LVATPGRL+D++ I L++ K LVLDEADRML +GF ++ I++ + P+ ++QTL+FSATFP++++ L + L + I V + + + Q++ V++ K + L L++ + L+FV + + L + LYK G HGD+ Q R L F+SG +L+AT +AARGLDI + VINFDLP +Y+HRIGR+GR G +GLA S + Sbjct: 312 GCHLLVATPGRLVDMLDRGKISLEQCKYLVLDEADRMLDMGFEPQIRKIVENDNMPPAGQRQTLMFSATFPKEIQMLARDFLANYIFLAVGRVGSTSENITQKIVWVDELDKRSFLLDLLEAAGLAKGPAGNEDSSLTLVFVETRKGADQLDEYLYKEGFPVTSIHGDRTQREREDALRRFRSGNTPILVATAVAARGLDIPNVKHVINFDLPSDVEEYVHRIGRTGRMGNLGLATSFFN 551
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000007141 (supercontig:LSalAtl2s:LSalAtl2s402:374905:376772:1 gene:EMLSAG00000007141 transcript:EMLSAT00000007141 description:"maker-LSalAtl2s402-augustus-gene-4.12") HSP 1 Score: 187.578 bits (475), Expect = 6.082e-53 Identity = 126/443 (28.44%), Postives = 210/443 (47.40%), Query Frame = 0 Query: 10 PTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWR--------------QALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPL 438 PT F +GL L+ + +++P+ IQ + I +L GRD+IA A +G+GKTA F++ +LQ I D + L+L PTRELA Q+ + + + N ++ GG ++ ++ L G ++ TP +V D ++ + G +K LVLDEAD ML+ GF E++ + + LP Q L SAT P ++ +T + + DPI + LV+R +G K +A +++ +W+ QA+IF N K + L +K+ + HGD Q R I+++F+SG+ VLI TD+ ARG+D++++ +VIN+DLP + Y+HRIGRSGR G G+A++ + ++D + IE+ ++D + Sbjct: 28 PT-FDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQSI--DTTMRE-------TQCLVLSPTRELAVQIQKVLLALGDYMN--VQCHACIGGTNLGEDIRKLDYGQHVVSGTP-------GRVYDMIRRRTLRTRG-----------------------------------------------IKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQIALISATLPHEILEMTSKFMADPIRI---------LVKRDELTLEGXKQFFVA--VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 393 HSP 2 Score: 161.384 bits (407), Expect = 1.151e-43 Identity = 87/250 (34.80%), Postives = 139/250 (55.60%), Query Frame = 0 Query: 441 GTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWR--------------QALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEK 676 G ++ TPGR+ D+I ++ +K LVLDEAD ML+ GF E++ + + LP Q L SAT P ++ +T + + DPI + LV+R +G K +A +++ EW+ QA+IF N K + L +K+ + HGD Q R I+++F+SG+ VLI TD+ ARG+D++++ +VIN+DLP + Y+HRIGRSGR G G+A++ + ++D IE+ Sbjct: 146 GQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQIALISATLPHEILEMTSKFMADPIRI---------LVKRDELTLEGXKQFFVA--VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIEQ 384
BLAST of rna helicase vs. SwissProt
Match: gi|152013500|sp|A5DZE6.1|DED1_LODEL (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 238.424 bits (607), Expect = 1.165e-67 Identity = 142/396 (35.86%), Postives = 204/396 (51.52%), Query Frame = 0 Query: 31 YQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL--LPS--KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 420 + +PTP+Q +P V AGRDL+A A TGSGKT F P+L + + + P G F S + PT ILV PTREL Q+ D K +A + ++ V+GG + Q++ L G D+LVATPGRL DL+ + L +K LVLDEADRML +GF ++ I++ +P +QTL+FSATFP ++ L + L D I V + + + Q+V VE K +++ L+ + ++F K ++LAD LY +G A HGD+ Q R + L FKSG+ +L+AT +AARGLDI + VIN+DLP DY+HRIGR+GRAG VG+A + + + Sbjct: 195 FTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAPIPESTGAFSSHKVY-PT---------------------------------------------ILVM--APTRELVSQIYDESKKFA--YRSWVRPCVVYGGADIGNQIRQLDRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDEEKKSVILDLLNANSEGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNN 540 HSP 2 Score: 183.726 bits (465), Expect = 4.610e-48 Identity = 101/243 (41.56%), Postives = 145/243 (59.67%), Query Frame = 0 Query: 431 NKIRLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL--LPS--KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 667 N+IR L G D+LVATPGRL DL+ + L +K LVLDEADRML +GF ++ I++ +P +QTL+FSATFP ++ L + L D I V + + + Q+V VE K +++ L+ + ++F K ++LAD LY +G A HGD+ Q R + L FKSG+ +L+AT +AARGLDI + VIN+DLP DY+HRIGR+GRAG VG+A + + + Sbjct: 300 NQIRQ--LDRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDEEKKSVILDLLNANSEGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNN 540
BLAST of rna helicase vs. SwissProt
Match: gi|121789113|sp|Q2HBE7.1|DED1_CHAGB (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 238.81 bits (608), Expect = 1.502e-67 Identity = 148/411 (36.01%), Postives = 219/411 (53.28%), Query Frame = 0 Query: 13 FSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL--LPS--KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 417 FS+ L + L++ + YQ PTP+Q IP V+ GRDL+A A TGSGKT F P++ Q +F G +P A S Y Q +A T +++A PTREL Q+ + + +A + ++ V+GG + +Q++ + G D+LVATPGRL+DLI I L +K LVLDEADRML +GF ++ I++ +P+ ++QTL+FSATFP ++ L + LND + V + + + Q+V VE K ++L ++ H LIFV K + L+D L + A HGD+ Q R R LE F++G+ +L+AT +AARGLDI + VIN+DLP DY+HRIGR+GRAG G+A + + Sbjct: 200 FSNPPLDAHLLSNIELARYQIPTPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFPIMHQ--------------SFTQGPSPIP--------AQSGGGY--------------------RQRKAYP--TALILA---PTRELVSQIYEEARKFA--YRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVQGEDMPTTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFN 561 HSP 2 Score: 182.185 bits (461), Expect = 2.416e-47 Identity = 99/230 (43.04%), Postives = 141/230 (61.30%), Query Frame = 0 Query: 441 GTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL--LPS--KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 664 G D+LVATPGRL+DLI I L +K LVLDEADRML +GF ++ I++ +P+ ++QTL+FSATFP ++ L + LND + V + + + Q+V VE K ++L ++ H LIFV K + L+D L + A HGD+ Q R R LE F++G+ +L+AT +AARGLDI + VIN+DLP DY+HRIGR+GRAG G+A + + Sbjct: 332 GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVQGEDMPTTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFN 561
BLAST of rna helicase vs. SwissProt
Match: gi|74659998|sp|Q6CB69.1|DED1_YARLI (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 237.269 bits (604), Expect = 1.526e-67 Identity = 147/417 (35.25%), Postives = 210/417 (50.36%), Query Frame = 0 Query: 10 PTN-FSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQ--IHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL--LP--SKKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 417 P N F+ L L+ + Y +PTP+Q +P V AGRDL+A A TGSGKT F P+L Q H +P + +G R + K+ A T V PTREL Q+ D K +A + ++ V+GG + QM+ + G D+LVA PGRL+DLI + L+ +K LVLDEADRML +GF ++ AI++ +P +++QTL+FSATFP ++ L + L D I V + + + Q+V VE G K + L ++ L+FV K ++L D L A HGD+ Q R R LE F+ G +L+AT +AARGLDI + V+N+DLP DY+HRIGR+GRAG G+A + + Sbjct: 158 PINAFTSPPLEEHLLTNIKLARYNKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSQSFFHGPSPTPQPTGP------------RHMHKK--------------AYPTALVL-----------------------APTRELVSQIYDEAKKFA--YRSWVRPCVVYGGADIGEQMRNIERGCDLLVAAPGRLVDLIDRGKVSLENIKYLVLDEADRMLDMGFEPQIRAIVQGSGMPDVNERQTLMFSATFPRNIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDGDKISALLDILSAAGKGLTLVFVETKRGADYLCDVLQSEDFPATSIHGDRSQRDRERALEMFRDGTTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 523 HSP 2 Score: 179.104 bits (453), Expect = 1.154e-46 Identity = 96/230 (41.74%), Postives = 137/230 (59.57%), Query Frame = 0 Query: 441 GTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL--LP--SKKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID 664 G D+LVA PGRL+DLI + L+ +K LVLDEADRML +GF ++ AI++ +P +++QTL+FSATFP ++ L + L D I V + + + Q+V VE G K + L ++ L+FV K ++L D L A HGD+ Q R R LE F+ G +L+AT +AARGLDI + V+N+DLP DY+HRIGR+GRAG G+A + + Sbjct: 294 GCDLLVAAPGRLVDLIDRGKVSLENIKYLVLDEADRMLDMGFEPQIRAIVQGSGMPDVNERQTLMFSATFPRNIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDGDKISALLDILSAAGKGLTLVFVETKRGADYLCDVLQSEDFPATSIHGDRSQRDRERALEMFRDGTTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 523
BLAST of rna helicase vs. SwissProt
Match: gi|122247124|sp|Q10MH8.1|RH24_ORYSJ (RecName: Full=DEAD-box ATP-dependent RNA helicase 24) HSP 1 Score: 240.35 bits (612), Expect = 1.589e-67 Identity = 155/414 (37.44%), Postives = 215/414 (51.93%), Query Frame = 0 Query: 12 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEV---QLQSANAS-TLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEV-GLALSLIDHED 420 +F+D G LM + + Y++PT IQ Q +P VL+GRD+I A TGSGKTAAF LP++ I D P EL K+ G I VC PTRELA Q+ K +A +N ++ V+GGVS Q + L+ G +I++ATPGRL+DL+ A+K+ + LVLDEADRM LGF ++ +I+ + +QTLLFSAT P +V+ L E+L DPI V Q+ SAN V V + + LL L L+F K + + +L +RG HGDK Q SR L+ FKSG VL+ATD+AARGLDI+ + V+NFD+ + ++HRIGR+GRAG+ G A +LI ++ Sbjct: 220 SFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQP--------------------ELEKE------------EGPIGVVCA-------------------------PTRELAHQIYLEAKKFAKPYN--LRVAAVYGGVSKFDQFKELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 573 HSP 2 Score: 173.711 bits (439), Expect = 3.396e-44 Identity = 99/235 (42.13%), Postives = 141/235 (60.00%), Query Frame = 0 Query: 438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEV---QLQSANAS-TLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEV-GLALSLIDHED 667 L+ G +I++ATPGRL+DL+ A+K+ + LVLDEADRM LGF ++ +I+ + +QTLLFSAT P +V+ L E+L DPI V Q+ SAN V V + + LL L + L+F K + + +L +RG HGDK Q SR L+ FKSG VL+ATD+AARGLDI+ + V+NFD+ + ++HRIGR+GRAG+ G A +LI ++ Sbjct: 339 LKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 573
BLAST of rna helicase vs. SwissProt
Match: gi|81691189|sp|Q65N62.1|CSHA_BACLD (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA) HSP 1 Score: 233.417 bits (594), Expect = 2.012e-67 Identity = 156/516 (30.23%), Postives = 256/516 (49.61%), Query Frame = 0 Query: 13 FSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPLRGGTDILVATPGRLLD--LISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEV 524 F D L S L + + +++ TPIQAQ IP LA +D+I A TG+GKTAAF +PL+++I+ ++P + +++ PTRELA QV++ + Y + + + + ++GG + Q++AL+ I+V TP ++ D H N R + L + N + LD EAD ML++GF E++++IL +P++ QTLLFSAT P +K + + +P ++V+ + S + Q EV + +K L L+ A++F K + L + L RG AE HGD Q R L FK G I+VL+ATD+AARGLDI + V NFD+P+ P Y+HRIGR+GRAG+ G+A++ I + + IE+ K ++D ++ T LD + + +D+++T++ + +L F + A +LL + +A +K +T E N P+ + Sbjct: 5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESP---------NIQAIVIAPTRELAIQVSEEL--YKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTP-------GRLLD-------HIN--------------------------------RRTMRLQTVNTVVLD--------EADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAPT----------LDEAIEGQQQVTVDRIRTIIEEN-----NLNFY--MTAAAELLEDHDSVTVVAAA----IKMMTKEPDNTPVRL 434 HSP 2 Score: 197.593 bits (501), Expect = 2.446e-54 Identity = 112/288 (38.89%), Postives = 164/288 (56.94%), Query Frame = 0 Query: 424 FKIIEKKNKIRLDPLRGGTDI-------------LVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLER-------EQIEG 689 +KI + K + R+ P+ GG DI +V TPGRLLD I+ ++L V T+VLDEAD ML++GF E++++IL +P++ QTLLFSAT P +K + + +P ++V+ + S + Q EV + +K L L+ A++F K + L + L RG AE HGD Q R L FK G I+VL+ATD+AARGLDI + V NFD+P+ P Y+HRIGR+GRAG+ G+A++ I + IE+ K +++R E IEG Sbjct: 92 YKIGQDK-RARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAPTLDEAIEG 378
BLAST of rna helicase vs. nr
Match: gi|656279300|ref|WP_029224953.1| (ATP-dependent helicase [Vibrio splendidus] >gi|1067294233|gb|OED73362.1| RNA helicase [Vibrio splendidus ZS-139]) HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0 Identity = 369/433 (85.22%), Postives = 374/433 (86.37%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGN+VSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 379 HSP 2 Score: 573.548 bits (1477), Expect = 0.000e+0 Identity = 282/299 (94.31%), Postives = 289/299 (96.66%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKK-KKAPKNQDVWLRN 731 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+REQ+EGFEVDEEA A LVAALKPVAPP GTGKKKK KKA N D+WLR+ Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDREQVEGFEVDEEAAAELVAALKPVAPPEGTGKKKKNKKAQTNHDIWLRD 428
BLAST of rna helicase vs. nr
Match: gi|218324808|emb|CAV26511.1| (putative ATP-dependent RNA helicase [Vibrio tasmaniensis LGP32]) HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0 Identity = 368/436 (84.40%), Postives = 376/436 (86.24%), Query Frame = 0 Query: 1 LQLMTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 LQLMTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGN+VSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGR+GEVGLALSLIDHEDYHHF IIEKKNKIRL+ Sbjct: 38 LQLMTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLIDHEDYHHFTIIEKKNKIRLE 419 HSP 2 Score: 601.668 bits (1550), Expect = 0.000e+0 Identity = 294/299 (98.33%), Postives = 297/299 (99.33%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGR+GEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN Sbjct: 170 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 468
BLAST of rna helicase vs. nr
Match: gi|1041564731|ref|WP_065206091.1| (ATP-dependent helicase [Vibrio splendidus] >gi|1040457879|gb|OBT30849.1| RNA helicase [Vibrio splendidus]) HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0 Identity = 368/433 (84.99%), Postives = 374/433 (86.37%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRL+ Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLE 379 HSP 2 Score: 598.201 bits (1541), Expect = 0.000e+0 Identity = 293/299 (97.99%), Postives = 295/299 (98.66%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRLEREQIEGFEVDEEATA LVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLEREQIEGFEVDEEATAELVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 428
BLAST of rna helicase vs. nr
Match: gi|937082233|ref|WP_054546896.1| (ATP-dependent helicase [Vibrio splendidus] >gi|934143720|gb|KPL94683.1| RNA helicase [Vibrio splendidus]) HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0 Identity = 367/433 (84.76%), Postives = 374/433 (86.37%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRR+GKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVC+FGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRL+ Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRAGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCIFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLE 379 HSP 2 Score: 597.045 bits (1538), Expect = 0.000e+0 Identity = 292/299 (97.66%), Postives = 295/299 (98.66%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRLEREQIEGFEVDEEATA LVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLEREQIEGFEVDEEATAELVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 428
BLAST of rna helicase vs. nr
Match: gi|1330682113|ref|WP_102551366.1| (ATP-dependent helicase [Vibrio splendidus] >gi|1327095173|gb|PMM62595.1| RNA helicase [Vibrio splendidus]) HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0 Identity = 368/433 (84.99%), Postives = 373/433 (86.14%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPL ARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGN+VSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD Sbjct: 1 MTNTTTPTNFSDLGLISPLTARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 379 HSP 2 Score: 575.089 bits (1481), Expect = 0.000e+0 Identity = 283/299 (94.65%), Postives = 290/299 (96.99%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKK-KKAPKNQDVWLRN 731 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+REQ+EGFEVDEEATA LVAALKPVAPP GTGKKKK KKA N D+WLR+ Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDREQVEGFEVDEEATAELVAALKPVAPPEGTGKKKKNKKAQTNHDIWLRD 428
BLAST of rna helicase vs. nr
Match: gi|1330711260|ref|WP_102576225.1| (ATP-dependent helicase [Vibrio splendidus] >gi|1326861923|gb|PMK37173.1| RNA helicase [Vibrio splendidus]) HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0 Identity = 368/433 (84.99%), Postives = 373/433 (86.14%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGN+VSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRS SDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSSSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 379 HSP 2 Score: 572.392 bits (1474), Expect = 0.000e+0 Identity = 282/299 (94.31%), Postives = 289/299 (96.66%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKK-KKAPKNQDVWLRN 731 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRS SDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+REQ+EGFEVDEEATA LVAALKPVAPP GTGKKKK KKA N D+WLR+ Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSSSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDREQVEGFEVDEEATAELVAALKPVAPPEGTGKKKKNKKAQTNHDIWLRD 428
BLAST of rna helicase vs. nr
Match: gi|1197840948|ref|WP_086773860.1| (ATP-dependent helicase [Vibrio sp. corallo1]) HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0 Identity = 367/433 (84.76%), Postives = 374/433 (86.37%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARL+ELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ+IHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLSELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQKIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 379 HSP 2 Score: 592.423 bits (1526), Expect = 0.000e+0 Identity = 289/299 (96.66%), Postives = 294/299 (98.33%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+REQIEGFEVDEEATA L+AALKPVAPPAGTGKKKKKKAP+NQDVWL NN Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDREQIEGFEVDEEATAELIAALKPVAPPAGTGKKKKKKAPQNQDVWLNNN 428
BLAST of rna helicase vs. nr
Match: gi|1196329213|ref|WP_086050984.1| (ATP-dependent helicase [Vibrio alginolyticus] >gi|1190171324|gb|ARP40412.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus]) HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0 Identity = 367/433 (84.76%), Postives = 373/433 (86.14%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+ Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSKAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLE 379 HSP 2 Score: 593.193 bits (1528), Expect = 0.000e+0 Identity = 291/299 (97.32%), Postives = 293/299 (97.99%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISS AIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATA LVAALKPVAPPAGTGKKKKKKA NQDVWLRNN Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSKAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAELVAALKPVAPPAGTGKKKKKKAQTNQDVWLRNN 428
BLAST of rna helicase vs. nr
Match: gi|914629045|ref|WP_050620773.1| (ATP-dependent helicase [Vibrio sp. J2-3] >gi|857692404|emb|CDT79554.1| putative ATP-dependent RNA helicase [Vibrio sp. J2-3]) HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0 Identity = 367/433 (84.76%), Postives = 374/433 (86.37%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARL+ELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ+IHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLSELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQKIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 379 HSP 2 Score: 588.186 bits (1515), Expect = 0.000e+0 Identity = 289/300 (96.33%), Postives = 294/300 (98.00%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTG-KKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+REQIEGFEVDEEATA L+AALKPVAPPAGTG KKKKKKAP+NQDVWL NN Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDREQIEGFEVDEEATAELIAALKPVAPPAGTGKKKKKKKAPQNQDVWLNNN 429
BLAST of rna helicase vs. nr
Match: gi|515648520|ref|WP_017081120.1| (ATP-dependent helicase [Vibrio splendidus] >gi|1067450501|gb|OEF20749.1| RNA helicase [Vibrio splendidus 5S-101]) HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0 Identity = 367/433 (84.76%), Postives = 374/433 (86.37%), Query Frame = 0 Query: 4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRR+GKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP ++ D + S A+ KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRL+ Sbjct: 1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRAGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLE 379 HSP 2 Score: 590.497 bits (1521), Expect = 0.000e+0 Identity = 291/300 (97.00%), Postives = 294/300 (98.00%), Query Frame = 0 Query: 434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTG-KKKKKKAPKNQDVWLRNN 732 ++ LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRLEREQIEGFEVDEEATA L+AALKPVAPPAGTG KKKKKKAPKNQDVWL NN Sbjct: 130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLEREQIEGFEVDEEATAELIAALKPVAPPAGTGKKKKKKKAPKNQDVWLNNN 429 The following BLAST results are available for this feature:
BLAST of rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
Pagesback to top
BLAST of rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold554_size137761:74928..77387+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold554_size137761-snap-gene-0.2 ID=maker-scaffold554_size137761-snap-gene-0.2|Name=rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=2460bp|location=Sequence derived from alignment at scaffold554_size137761:74928..77387+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'rna helicase' has the following synonyms
Add to Basket
|