rna helicase, maker-scaffold554_size137761-snap-gene-0.2 (gene) Tigriopus kingsejongensis

Overview


Name	rna helicase
Unique Name	maker-scaffold554_size137761-snap-gene-0.2
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000006615 (supercontig:LSalAtl2s:LSalAtl2s364:491177:493327:-1 gene:EMLSAG00000006615 transcript:EMLSAT00000006615 description:"snap_masked-LSalAtl2s364-processed-gene-5.14")

HSP 1 Score: 155.606 bits (392), Expect = 3.133e-40
Identity = 131/432 (30.32%), Postives = 198/432 (45.83%), Query Frame = 0

Query:   16 LGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQA----LRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQL---QSANASTLVQRVFEVEKGRKTALLAHLIQQHQWR-QALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDI-----------------------AARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 416
            +GL   L+  + EL + +PT IQ++ +P +L G+DL+A   TGSGKT AFALP+LQ++     L   +G    V  L L P+REL +Q+   V+S   H   +I      G +S+   ++A    L+   D LV+TP                               G +  + Q +      DI         DL SS       ++ LV+DEAD   S G+  +L  IL  LPS  Q++L SAT  E V  L   +L++P+ +QL   Q A A  L Q + ++E+  K  L+  L +    + + +IFVN  + C  +   L + GI   V + +    SR  I+  F  G  D+++A D                         +RG+D + +  VINFD P     Y+HR+GR+ R    G ALS+I
Sbjct:    1 MGLDDRLLESVAELGWSEPTLIQSRAVPLILEGKDLLARGRTGSGKTGAFALPVLQRLL----LGESTGS---VRALFLAPSRELVQQIHGVVRSLLSHCGRSIS----IGNLSMGENLEAGRALLKTPPDXLVSTP-------------------------------GRLWSHIQAK------DI---------DLSSS-------LEILVIDEADLTFSFGYESDLKGILINLPSIYQSVLTSATLSEDVNKLKKLVLHNPVILQLEEPQLAEAXQLAQYLIKIEEEDKFLLIYALFKLRLIQGKTIIFVNNVDRCYKIKLFLEQFGIPVCVLNSELPAASRCHIVTQFNKGIYDIIVAXDENFLHCSNPNDKDKGKRKKDTESGISRGIDFQFVSNVINFDFPLDVDSYIHRVGRTARGNNTGTALSMI 368

HSP 2 Score: 119.013 bits (297), Expect = 3.458e-28
Identity = 84/254 (33.07%), Postives = 125/254 (49.21%), Query Frame = 0

Query:  438 LRGGTDILVATPGRLLDLISSNAIKLDK-VKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQL---QSANASTLVQRVFEVEKGRKTALLAHLIQQHEWR-QALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDI-----------------------AARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 663
            L+   D LV+TPGRL   I +  I L   ++ LV+DEAD   S G+  +L  IL  LPS  Q++L SAT  E V  L   +L++P+ +QL   Q A A  L Q + ++E+  K  L+  L +    + + +IFVN  + C  +   L + GI   V + +    SR  I+  F  G  D+++A D                         +RG+D + +  VINFD P     Y+HR+GR+ R    G ALS+I
Sbjct:  115 LKTPPDXLVSTPGRLWSHIQAKDIDLSSSLEILVIDEADLTFSFGYESDLKGILINLPSIYQSVLTSATLSEDVNKLKKLVLHNPVILQLEEPQLAEAXQLAQYLIKIEEEDKFLLIYALFKLRLIQGKTIIFVNNVDRCYKIKLFLEQFGIPVCVLNSELPAASRCHIVTQFNKGIYDIIVAXDENFLHCSNPNDKDKGKRKKDTESGISRGIDFQFVSNVINFDFPLDVDSYIHRVGRTARGNNTGTALSMI 368

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000012740 (supercontig:LSalAtl2s:LSalAtl2s967:89676:95604:1 gene:EMLSAG00000012740 transcript:EMLSAT00000012740 description:"augustus_masked-LSalAtl2s967-processed-gene-0.13")

HSP 1 Score: 145.591 bits (366), Expect = 4.586e-37
Identity = 125/421 (29.69%), Postives = 197/421 (46.79%), Query Frame = 0

Query:   11 TNFSDL-GLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLIS-SNAIKLDKVKTLVLDEADRML----SLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEV--EKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYK-RGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 420
            TN+ DL G +   +  +    Y  PTPIQAQ IP +L GRD++  A TGSGKTAA+ LP+L  ++++          N +  +IL PTREL         S+ +H                    +AL+     L+    P  +   QVA S KS                             G ++L++TP  L+ LI   +++ L  ++ L++DE+D++        F E+L  + K   S K+   FSAT    V+      L++ + V +   N +   + Q +     EKG+  AL  +LI        LIFV      + L + L K + I AEV H  +    R   ++ F++G   VLI T++ +RG+D++ + +VIN+D P S   Y+HR+GR+GRAG  G A++    +D
Sbjct:   66 TNWWDLSGSLPEGLIEMVSSLYPNPTPIQAQSIPIMLQGRDVLGSAPTGSGKTAAYLLPIL--VNQEK---------NKLKTIILCPTREL---------SHQIH-------------------QEALK-----LIP---PNYQTKVQVASSKKS---------------------------NQGANVLISTPNTLVYLIKDGSSLDLKSLEWLIVDESDKLFEDKGKASFREQLAVVYKACMSSKKAF-FSATLATDVENWCKTNLDNAVSVTIGIRNKACKDVKQSLVYTGSEKGKNYAL-TNLINDGIKPPVLIFVQDFERADELKEILTKQKKIKAEVIHSHRSLLQREDAIKTFRAGRTWVLICTELMSRGIDVKGVNLVINYDFPPSTVSYIHRVGRTGRAGRPGRAVTFFTDDD 410

HSP 2 Score: 107.071 bits (266), Expect = 1.942e-24
Identity = 74/237 (31.22%), Postives = 125/237 (52.74%), Query Frame = 0

Query:  441 GTDILVATPGRLLDLIS-SNAIKLDKVKTLVLDEADRML----SLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEV--EKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYK-RGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 667
            G ++L++TP  L+ LI   +++ L  ++ L++DE+D++        F E+L  + K   S K+   FSAT    V+      L++ + V +   N +   + Q +     EKG+  AL  +LI        LIFV      + L + L K + I AEV H  +    R   ++ F++G   VLI T++ +RG+D++ + +VIN+D P S   Y+HR+GR+GRAG  G A++    +D
Sbjct:  176 GANVLISTPNTLVYLIKDGSSLDLKSLEWLIVDESDKLFEDKGKASFREQLAVVYKACMSSKKAF-FSATLATDVENWCKTNLDNAVSVTIGIRNKACKDVKQSLVYTGSEKGKNYAL-TNLINDGIKPPVLIFVQDFERADELKEILTKQKKIKAEVIHSHRSLLQREDAIKTFRAGRTWVLICTELMSRGIDVKGVNLVINYDFPPSTVSYIHRVGRTGRAGRPGRAVTFFTDDD 410

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000007706 (supercontig:LSalAtl2s:LSalAtl2s449:21910:24507:-1 gene:EMLSAG00000007706 transcript:EMLSAT00000007706 description:"maker-LSalAtl2s449-snap-gene-0.33")

HSP 1 Score: 146.362 bits (368), Expect = 1.545e-36
Identity = 102/288 (35.42%), Postives = 147/288 (51.04%), Query Frame = 0

Query:  140 GTDILVATPVPTRELAKQVADSVKSYAVH--FNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKV--KTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQS----ANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEV--FHGDKGQGSRTRILEDFKSGEID-VLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 416
            G   LV TP  TRELA Q+ ++++    H  F+  +    V GG  +  + + L    +I++ TPGRLL  +  N  + D +  + LVLDEADR L LGF E ++AIL  LP ++QTLLFSAT    +K L    L +P+ V +      +    L Q     E  +K  +L   I+ H+  + L+FV +     +  + L K  +   V   +G   Q  R  I E+F   E   VL ATDIAARGLD  K+  V   D P     Y+HR+GR+ R   +G +L L+
Sbjct:  174 GLGALVITP--TRELAYQIFETLRKVGKHHEFSAGL----VIGGKDLQYETKRL-STCNIVICTPGRLLQHMDENP-QFDPITLQILVLDEADRCLDLGFAETMNAILGNLPKERQTLLFSATQTRSIKDLGRLSLKNPVYVSIHEHSKFSTPEKLTQNYMVCELDKKMDMLLSFIKSHRKSKTLVFVQSCKQARYFQELLKKIRVGVSVLGLYGTLHQLRRMSIYEEFCQEENSMVLFATDIAARGLDFPKVDWVFQLDCPEDGKTYLHRVGRTARHASIGKSLMLL 453

HSP 2 Score: 132.109 bits (331), Expect = 4.665e-32
Identity = 85/231 (36.80%), Postives = 119/231 (51.52%), Query Frame = 0

Query:  442 TDILVATPGRLLDLISSNAIKLDKV--KTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQS----ANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEV--FHGDKGQGSRTRILEDFKSGEID-VLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 663
             +I++ TPGRLL  +  N  + D +  + LVLDEADR L LGF E ++AIL  LP ++QTLLFSAT    +K L    L +P+ V +      +    L Q     E  +K  +L   I+ H   + L+FV +     +  + L K  +   V   +G   Q  R  I E+F   E   VL ATDIAARGLD  K+  V   D P     Y+HR+GR+ R   +G +L L+
Sbjct:  224 CNIVICTPGRLLQHMDENP-QFDPITLQILVLDEADRCLDLGFAETMNAILGNLPKERQTLLFSATQTRSIKDLGRLSLKNPVYVSIHEHSKFSTPEKLTQNYMVCELDKKMDMLLSFIKSHRKSKTLVFVQSCKQARYFQELLKKIRVGVSVLGLYGTLHQLRRMSIYEEFCQEENSMVLFATDIAARGLDFPKVDWVFQLDCPEDGKTYLHRVGRTARHASIGKSLMLL 453

HSP 3 Score: 71.633 bits (174), Expect = 4.852e-13
Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = 0

Query:   12 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVH--FNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP 148
            +F D+ L +  +  L E  Y +PT IQ + I     G D++  A TG GKT AF +P+L+ +H +     +  K + +  L++ PTRELA Q+ ++++    H  F+  +    V GG  +  + + L    +I++ TP
Sbjct:  103 HFRDMPLSAYTLKGLKENNYDEPTQIQKESIGLCFRGSDVLGAAKTGCGKTLAFVIPILELLHRE-----KWTKLDGLGALVITPTRELAYQIFETLRKVGKHHEFSAGL----VIGGKDLQYETKRL-STCNIVICTP 231

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000010227 (supercontig:LSalAtl2s:LSalAtl2s679:403636:405959:-1 gene:EMLSAG00000010227 transcript:EMLSAT00000010227 description:"maker-LSalAtl2s679-augustus-gene-3.17")

HSP 1 Score: 143.28 bits (360), Expect = 3.843e-36
Identity = 116/428 (27.10%), Postives = 197/428 (46.03%), Query Frame = 0

Query:   27 TELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVH---FNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQS-------ANASTLVQRVFEVEKGRK--TALLAHLIQQHQWRQALIFVNAKNSCEHLADKL--YKRGIIAEVF--HGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPL 438
             +L++++ TPIQA  IP  L  +D+ A A TGSGKT AF +P+L+ +   +       K + +  LIL PTRELA Q++  ++ +       N  +            T  +  + G  I++ATP                      G ++ +      S+N Q++A                      A      K L+LDEADR+L LGF   ++ I+  LP +++T LFSAT  + +  L    L +P+ V+++        +    L     + +   K    LL  L  +   ++ ++F +     E+ +  L  + +     VF  HG KG G+R +I + FK  ++ VL+ TD+ +RG+D   +  V+ FD P++   ++HRIGR+ R+G VG AL L+   +  +   I+   K+  D +
Sbjct:   29 NDLKFKKMTPIQAXAIPLFLGLKDVCAEAVTGSGKTLAFVIPILEILLNSS---NEESKVHDIGALILSPTRELASQISQVLEVFLSKIPSLNSLLIIGGGGSSSVGETLRKFEKEGAKIIIATP----------------------GRLEDILTGKTESIN-QLKA-------------------EKMARGFKSTKILILDEADRLLRLGFETAINTIISFLPKQRRTSLFSATQTKDLDELIRAGLRNPVLVKVKEHGKENELSTPIKLTNYYMKCDPPAKKFATLLKFLKTEAAGKKTMVFFSTCACVEYFSTLLERFLKDDNTPVFALHGQKG-GTRFKIFDKFKKLDMGVLVCTDVLSRGVDFPDVEWVVQFDAPKTAEAFVHRIGRTARSGAVGNALLLLLPTEDSYIDFIKINQKVDFDKM 410

HSP 2 Score: 121.324 bits (303), Expect = 6.989e-29
Identity = 82/274 (29.93%), Postives = 144/274 (52.55%), Query Frame = 0

Query:  439 RGGTDILVATPGRLLDLI-----SSNAIKLDKV-------KTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQS-------ANASTLVQRVFEVEKGRK--TALLAHLIQQHEWRQALIFVNAKNSCEHLADKL--YKRGIIAEVF--HGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQI 687
            + G  I++ATPGRL D++     S N +K +K+       K L+LDEADR+L LGF   ++ I+  LP +++T LFSAT  + +  L    L +P+ V+++        +    L     + +   K    LL  L  +   ++ ++F +     E+ +  L  + +     VF  HG KG G+R +I + FK  ++ VL+ TD+ +RG+D   +  V+ FD P++   ++HRIGR+ R+G VG AL L+   +  +   I+   K+  ++ ++
Sbjct:  140 KEGAKIIIATPGRLEDILTGKTESINQLKAEKMARGFKSTKILILDEADRLLRLGFETAINTIISFLPKQRRTSLFSATQTKDLDELIRAGLRNPVLVKVKEHGKENELSTPIKLTNYYMKCDPPAKKFATLLKFLKTEAAGKKTMVFFSTCACVEYFSTLLERFLKDDNTPVFALHGQKG-GTRFKIFDKFKKLDMGVLVCTDVLSRGVDFPDVEWVVQFDAPKTAEAFVHRIGRTARSGAVGNALLLLLPTEDSYIDFIKINQKVDFDKMEV 412

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000010426 (supercontig:LSalAtl2s:LSalAtl2s690:265412:268192:-1 gene:EMLSAG00000010426 transcript:EMLSAT00000010426 description:"maker-LSalAtl2s690-augustus-gene-3.24")

HSP 1 Score: 137.887 bits (346), Expect = 6.005e-34
Identity = 97/317 (30.60%), Postives = 156/317 (49.21%), Query Frame = 0

Query:  149 VPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDK---VKTLVLDEADRMLSLGFTEELDAILKLLPSK------KQTLLFSATFP-----------------------EQVKTLT-----HELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEV-FHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKII 427
             PTRELA Q+ + +     + N  IKT  + GG++   Q++ L    +I+VATPGRL DLI      L K   VK L +DE DRM+  G  EEL  +L+L+         +QT +FSAT                         E++K+LT      E     +++  +     TL +     +   K   L +++ QH  R  ++F N+ +    L + L++  ++  +  H    Q  R + LE F   E  +LIATD+AARGLDI  +  V+++ +PR+   Y+HR GR+ RA   G+++  I+ ++ H ++ I
Sbjct:  318 TPTRELAVQIKNHLTDIGKYTN--IKTAVIVGGMAPQKQIRVLSHCPEIVVATPGRLWDLIQEGNPHLSKITDVKYLAIDETDRMVEKGHFEELQQLLELINENAEKKEARQTFVFSATLSLVHEPPKKNNTAGKKIMKALTPKEKLKSLTSIIGVKEKRVKVVDITRKLGTVETLTESRIHCKIDEKDYFLYYILVQHPGR-TMVFCNSIDCVRRLVN-LFQYLLVEPLGLHAQMHQKQRLKNLERFTQNENSILIATDVAARGLDIPHVEHVVHYQVPRTSESYIHRSGRTARANREGISVMFIEPKETHAYRKI 630

HSP 2 Score: 114.39 bits (285), Expect = 1.994e-26
Identity = 82/270 (30.37%), Postives = 131/270 (48.52%), Query Frame = 0

Query:  443 DILVATPGRLLDLISSNAIKLDK---VKTLVLDEADRMLSLGFTEELDAILKLLPSK------KQTLLFSATFP-----------------------EQVKTLT-----HELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEV-FHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTII 674
            +I+VATPGRL DLI      L K   VK L +DE DRM+  G  EEL  +L+L+         +QT +FSAT                         E++K+LT      E     +++  +     TL +     +   K   L +++ QH  R  ++F N+ +    L + L++  ++  +  H    Q  R + LE F   E  +LIATD+AARGLDI  +  V+++ +PR+   Y+HR GR+ RA   G+++  I+ ++ H +  I
Sbjct:  363 EIVVATPGRLWDLIQEGNPHLSKITDVKYLAIDETDRMVEKGHFEELQQLLELINENAEKKEARQTFVFSATLSLVHEPPKKNNTAGKKIMKALTPKEKLKSLTSIIGVKEKRVKVVDITRKLGTVETLTESRIHCKIDEKDYFLYYILVQHPGR-TMVFCNSIDCVRRLVN-LFQYLLVEPLGLHAQMHQKQRLKNLERFTQNENSILIATDVAARGLDIPHVEHVVHYQVPRTSESYIHRSGRTARANREGISVMFIEPKETHAYRKI 630

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BLAST of rna helicase vs. SwissProt
Match: gi|548730|sp|P25888.3|RHLE_ECOLI (RecName: Full=ATP-dependent RNA helicase RhlE)

HSP 1 Score: 308.145 bits (788), Expect = 5.081e-96
Identity = 176/421 (41.81%), Postives = 247/421 (58.67%), Query Frame = 0

Query:   12 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNF-VSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEK 429
            +F  LGL   ++  + E  Y++PTPIQ Q IP+VL GRDL+A A TG+GKTA F LPLLQ +    P      KG   V  LIL PTRELA Q+ ++V+ Y+ + N  I+++ VFGGVS+N QM  LRGG D+LVATP    +L  Q  ++VK   V                             +++    R+LD+                         GF  ++  +L  LP+K+Q LLFSATF + +K L  +LL++P+E+++   N ++  + Q V  V+K RK  LL+H+I +  W+Q L+F   K+   HLA++L K GI +   HG+K QG+RTR L DFKSG+I VL+ATDIAARGLDIE+LP V+N++LP  P DY+HRIGR+GRA   G ALSL+  +++   + IEK
Sbjct:    2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQP----HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN--IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEI---------------------------LVLDEADRMLDM-------------------------GFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEK 362

HSP 2 Score: 270.011 bits (689), Expect = 1.450e-81
Identity = 135/258 (52.33%), Postives = 183/258 (70.93%), Query Frame = 0

Query:  438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVD 693
            LRGG D+LVATPGRLLDL   NA+KLD+V+ LVLDEADRML +GF  ++  +L  LP+K+Q LLFSATF + +K L  +LL++P+E+++   N ++  + Q V  V+K RK  LL+H+I +  W+Q L+F   K+   HLA++L K GI +   HG+K QG+RTR L DFKSG+I VL+ATDIAARGLDIE+LP V+N++LP  P DY+HRIGR+GRA   G ALSL+  +++     IEK  K  + R  I G+E D
Sbjct:  122 LRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPD 379

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BLAST of rna helicase vs. SwissProt
Match: gi|32171494|sp|Q8XA87.3|DEAD_ECO57 (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A)

HSP 1 Score: 265.774 bits (678), Expect = 4.828e-78
Identity = 154/427 (36.07%), Postives = 233/427 (54.57%), Query Frame = 0

Query:   11 TNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHED--APLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKI 433
            T F+DLGL +P++  L +L Y++P+PIQA+ IP +L GRD++  A TGSGKTAAF+LPLLQ +  +  AP             L+L PTRELA QVA+++  ++ H  G +  V ++GG   + Q++ALR G  I+V TP        ++ D +K                            RG  D                   L K+  LVLDEAD ML +GF E+++ I+  +P   QT LFSAT PE ++ +T   + +P EV++QS+  +   + Q  + V   RK   L   ++   +  A+IFV  KN+   +A+ L + G  +   +GD  Q  R + LE  K G +D+LIATD+AARGLD+E++ +V+N+D+P     Y+HRIGR+GRAG  G AL  +++ +    + IE+  K+
Sbjct:    6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAP-----------QILVLAPTRELAVQVAEAMTDFSKHMRG-VNVVALYGGQRYDVQLRALRQGPQIVVGTP-------GRLLDHLK----------------------------RGTLD-------------------LSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366

HSP 2 Score: 197.593 bits (501), Expect = 3.524e-53
Identity = 99/254 (38.98%), Postives = 154/254 (60.63%), Query Frame = 0

Query:  429 KKNKIRLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKI 680
            ++  ++L  LR G  I+V TPGRLLD +    + L K+  LVLDEAD ML +GF E+++ I+  +P   QT LFSAT PE ++ +T   + +P EV++QS+  +   + Q  + V   RK   L   ++  ++  A+IFV  KN+   +A+ L + G  +   +GD  Q  R + LE  K G +D+LIATD+AARGLD+E++ +V+N+D+P     Y+HRIGR+GRAG  G AL  +++ +      IE+  K+
Sbjct:  113 QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|71154182|sp|P0A9P7.2|DEAD_ECOL6 (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A >gi|71154193|sp|P0A9P6.2|DEAD_ECOLI RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A; AltName: Full=Translation factor W2 >gi|71154222|sp|P0A9P8.2|DEAD_SHIFL RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A)

HSP 1 Score: 265.774 bits (678), Expect = 5.637e-78
Identity = 154/427 (36.07%), Postives = 233/427 (54.57%), Query Frame = 0

Query:   11 TNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHED--APLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKI 433
            T F+DLGL +P++  L +L Y++P+PIQA+ IP +L GRD++  A TGSGKTAAF+LPLLQ +  +  AP             L+L PTRELA QVA+++  ++ H  G +  V ++GG   + Q++ALR G  I+V TP        ++ D +K                            RG  D                   L K+  LVLDEAD ML +GF E+++ I+  +P   QT LFSAT PE ++ +T   + +P EV++QS+  +   + Q  + V   RK   L   ++   +  A+IFV  KN+   +A+ L + G  +   +GD  Q  R + LE  K G +D+LIATD+AARGLD+E++ +V+N+D+P     Y+HRIGR+GRAG  G AL  +++ +    + IE+  K+
Sbjct:    6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAP-----------QILVLAPTRELAVQVAEAMTDFSKHMRG-VNVVALYGGQRYDVQLRALRQGPQIVVGTP-------GRLLDHLK----------------------------RGTLD-------------------LSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366

HSP 2 Score: 197.593 bits (501), Expect = 4.207e-53
Identity = 99/254 (38.98%), Postives = 154/254 (60.63%), Query Frame = 0

Query:  429 KKNKIRLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKI 680
            ++  ++L  LR G  I+V TPGRLLD +    + L K+  LVLDEAD ML +GF E+++ I+  +P   QT LFSAT PE ++ +T   + +P EV++QS+  +   + Q  + V   RK   L   ++  ++  A+IFV  KN+   +A+ L + G  +   +GD  Q  R + LE  K G +D+LIATD+AARGLD+E++ +V+N+D+P     Y+HRIGR+GRAG  G AL  +++ +      IE+  K+
Sbjct:  113 QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|8928554|sp|P33906.3|DEAD_KLEPN (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A)

HSP 1 Score: 265.003 bits (676), Expect = 1.187e-77
Identity = 154/427 (36.07%), Postives = 232/427 (54.33%), Query Frame = 0

Query:   11 TNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHED--APLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKI 433
            T F+DLGL +P++  LT+L Y++P+PIQA+ IP +L GRD++  A TGSGKTAAF+LPLL  I  +  AP             L+L PTRELA QVA+++  ++ H  G +  V ++GG   + Q++ALR G  I+V TP        ++ D +K                            RG  D                   L K+  LVLDEAD ML +GF E+++ I+  +P   QT LFSAT PE ++ +T   + +P EV++QS+  +   + Q  +     RK   L   ++   +  A+IFV  KN+   +A+ L + G  +   +GD  Q  R + LE  K G +D+LIATD+AARGLD+E++ +V+N+D+P     Y+HRIGR+GRAG  G AL  +++ +    + IE+  K+
Sbjct:    6 TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAP-----------QILVLAPTRELAVQVAEAMTEFSKHMRG-VNVVALYGGQRYDVQLRALRQGPQIVVGTP-------GRLLDHLK----------------------------RGTLD-------------------LSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366

HSP 2 Score: 195.667 bits (496), Expect = 1.962e-52
Identity = 98/254 (38.58%), Postives = 153/254 (60.24%), Query Frame = 0

Query:  429 KKNKIRLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKI 680
            ++  ++L  LR G  I+V TPGRLLD +    + L K+  LVLDEAD ML +GF E+++ I+  +P   QT LFSAT PE ++ +T   + +P EV++QS+  +   + Q  +     RK   L   ++  ++  A+IFV  KN+   +A+ L + G  +   +GD  Q  R + LE  K G +D+LIATD+AARGLD+E++ +V+N+D+P     Y+HRIGR+GRAG  G AL  +++ +      IE+  K+
Sbjct:  113 QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|134039178|sp|P96614.2|CSHA_BACSU (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA)

HSP 1 Score: 247.284 bits (630), Expect = 1.839e-72
Identity = 141/432 (32.64%), Postives = 226/432 (52.31%), Query Frame = 0

Query:   13 FSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPLRGGT 442
            F D  L S LM  +  + +++ TPIQAQ IP  L+ +D+I  A TG+GKTAAF +PL+++I+ ++P          +  +++ PTRELA QV++ +  Y +  +   K + ++GG  +  Q++AL+   +I+V TP        ++ D +    +  N                                                V T+V+DEAD ML++GF +++++IL  +PS+ QTLLFSAT P  +K +    + +P  ++V+ +    S + Q   EV++ +K   L  L+       A++F   K   + LA+ L  RG  AE  HGD  Q  R   L  FK G I+VL+ATD+AARGLDI  +  V NFD+P+ P  Y+HRIGR+GRAG+ G+A++ I   +    + IE+  K ++D ++  T
Sbjct:    5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESP---------NIQAIVIAPTRELAIQVSEEL--YKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTP-------GRLLDHINRRTIRLNN-----------------------------------------------VNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPT 371

HSP 2 Score: 201.06 bits (510), Expect = 1.643e-55
Identity = 102/249 (40.96%), Postives = 153/249 (61.45%), Query Frame = 0

Query:  438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLER 684
            L+   +I+V TPGRLLD I+   I+L+ V T+V+DEAD ML++GF +++++IL  +PS+ QTLLFSAT P  +K +    + +P  ++V+ +    S + Q   EV++ +K   L  L+       A++F   K   + LA+ L  RG  AE  HGD  Q  R   L  FK G I+VL+ATD+AARGLDI  +  V NFD+P+ P  Y+HRIGR+GRAG+ G+A++ I   +      IE+  K +++R
Sbjct:  118 LKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDR 366

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA)

HSP 1 Score: 243.817 bits (621), Expect = 1.383e-71
Identity = 141/432 (32.64%), Postives = 230/432 (53.24%), Query Frame = 0

Query:   11 TNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED---YHHFKIIEKKNKIRLDP 437
            T F +LGL   +M  +  + +++ TPIQA+ IP  L  +D+I  A TG+GKTAAF +P+++++         + K + V  L++ PTRELA QV++ +  Y +     ++ + ++GG  +  Q++AL+    ++V TP        ++ D       H N                     RG                    ++L+ V T+VLDEAD ML++GF E+++AIL  +P+++QTLLFSAT P+ ++ +    +N+P  ++V+ +      + Q   EV + +K  +L  L+       A++F   K   + LA+ L  RG  AE  HGD  Q  R  +L  FK G I++L+ATD+AARGLDI  +  V NFD+P+ P  Y+HRIGR+GRAG+ G+A++ +   +    HH +   K+   R+ P
Sbjct:    2 TTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV---------NVKNSAVQALVVAPTRELAIQVSEEL--YKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTP-------GRIID-------HIN---------------------RG-------------------TLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKP 368

HSP 2 Score: 205.297 bits (521), Expect = 2.659e-57
Identity = 103/269 (38.29%), Postives = 162/269 (60.22%), Query Frame = 0

Query:  431 NKIRLDPLRGGTDI-------------LVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLER 684
             ++R+ P+ GG DI             +V TPGR++D I+   ++L+ V T+VLDEAD ML++GF E+++AIL  +P+++QTLLFSAT P+ ++ +    +N+P  ++V+ +      + Q   EV + +K  +L  L+       A++F   K   + LA+ L  RG  AE  HGD  Q  R  +L  FK G I++L+ATD+AARGLDI  +  V NFD+P+ P  Y+HRIGR+GRAG+ G+A++ +   +      IE+  K ++ER
Sbjct:   97 KRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMER 365

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|75535255|sp|Q9Z6C9.1|CSHA_LACRE (RecName: Full=ATP-dependent RNA helicase CshA; AltName: Full=Autoaggregation-mediating protein)

HSP 1 Score: 243.047 bits (619), Expect = 6.413e-71
Identity = 144/432 (33.33%), Postives = 226/432 (52.31%), Query Frame = 0

Query:   13 FSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST-LVQRVF-EVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDPLRGGT 442
            FS+LGL   L+  +    Y++ TPIQ Q IP VL G+D+I  A TG+GKTAAF LP+++ +  + P          +  +I+ PTRELA Q  + +  Y +  +  ++   V+GG  +  Q+++L+    ILV TP   R+              H N                                         + +KLD +KTLVLDEAD ML++GF E++++I+K  P  +QTLLFSAT P ++K +  + ++DP  V++++   +T LV + +       K  ++  LI        ++F   K   + L+  L  RG  A   HGD  Q  R++I+  FK+ E+D+L+ATD+AARGLDI  +  V N+D+P  P  Y+HRIGR+GRAG  G++L+ +   +  +   IEK  ++R+ PL+  T
Sbjct:    3 FSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENVDTENP---------NIQAIIISPTRELAIQTQEEL--YRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRLRD--------------HIN----------------------------------------RHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRVRMLPLKPPT 369

HSP 2 Score: 192.2 bits (487), Expect = 3.286e-52
Identity = 103/269 (38.29%), Postives = 160/269 (59.48%), Query Frame = 0

Query:  429 KKNKIRLDPLRGGTDI-------------LVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST-LVQRVF-EVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRL 682
            K   +R+  + GG DI             LV TPGRL D I+ + +KLD +KTLVLDEAD ML++GF E++++I+K  P  +QTLLFSAT P ++K +  + ++DP  V++++   +T LV + +       K  ++  LI   +    ++F   K   + L+  L  RG  A   HGD  Q  R++I+  FK+ E+D+L+ATD+AARGLDI  +  V N+D+P  P  Y+HRIGR+GRAG  G++L+ +   +  +   IEK  ++R+
Sbjct:   94 KDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRVRM 362

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|143456452|sp|Q0DB53.2|RH52A_ORYSJ (RecName: Full=DEAD-box ATP-dependent RNA helicase 52A)

HSP 1 Score: 243.432 bits (620), Expect = 5.185e-70
Identity = 150/425 (35.29%), Postives = 225/425 (52.94%), Query Frame = 0

Query:   12 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLL--PSK--KQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQH---------QWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDY 421
             F   GL+  ++  +    Y+ PTP+Q   +P  LAGRDL+A A TGSGKTAAF LP+                   VSGL+      +  +   S       FN A              + +AL     +L     PTRELA Q+ +  K ++  F   ++ V  +GG  +  Q++ L  G DILVATPGRL+D++  + + L+ +K LV+DEADRML +GF  ++  I++ +  P K  +QT+LFSATFP +++ L  + L++ I + +    +ST  ++Q+V  +  G K   L  L+Q+          Q    L+FV  K   + L   LY +G  A   HGD+ Q  R   L  FK+G   +++ATD+A+RGLD+  +  VIN+DLP+S  DY+HRIGR+GRAG+ G A +     D+
Sbjct:   85 GFEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPV-------------------VSGLVAAGGSGIGHRERSS-------FNRAA------------AKPRAL-----VLA----PTRELAAQINEEAKKFS--FQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDH 460

HSP 2 Score: 182.57 bits (462), Expect = 5.240e-48
Identity = 99/250 (39.60%), Postives = 150/250 (60.00%), Query Frame = 0

Query:  434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLL--PSK--KQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQA---------LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDY 668
            +L  L  G DILVATPGRL+D++  + + L+ +K LV+DEADRML +GF  ++  I++ +  P K  +QT+LFSATFP +++ L  + L++ I + +    +ST  ++Q+V  +  G K   L  L+Q+     A         L+FV  K   + L   LY +G  A   HGD+ Q  R   L  FK+G   +++ATD+A+RGLD+  +  VIN+DLP+S  DY+HRIGR+GRAG+ G A +     D+
Sbjct:  211 QLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDH 460

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|74660335|sp|Q6CLR3.1|DED1_KLULA (RecName: Full=ATP-dependent RNA helicase DED1)

HSP 1 Score: 243.047 bits (619), Expect = 1.220e-69
Identity = 148/394 (37.56%), Postives = 204/394 (51.78%), Query Frame = 0

Query:   31 YQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL--LPS--KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDH 418
            + +PTP+Q   +P V AGRDL+A A TGSGKT  F  P+L +     P       GN                      SY       IK V                  T +++A   PTRELA Q+ D  K +   +   +K + V+GG S++ Q++ +R G ++LVATPGRL DL+    I L  VK LVLDEADRML +GF  ++  I++   +PS   +QTL+FSATFP +++ L  + L D +   V    + +  + Q++  VE   K   L  L+        LIFV  K + + L D L   G  A   HGD+ QG R R L  FK+G   +L+AT +AARGLDI  +  VINFDLP    DY+HRIGR+GRAG  G+A +  + 
Sbjct:  179 FTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESFSSGPASTPEAAGN----------------------SY-------IKKVYP----------------TAVILA---PTRELATQIYDEAKKFT--YRSWVKPMVVYGGASIDNQIKQMRYGCNLLVATPGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEGSDMPSVDNRQTLMFSATFPSEIQHLASDFLKDYVFLSVGRVGSTSENITQKILYVEDFDKNDTLLDLLAASNEGLTLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNR 522

HSP 2 Score: 182.956 bits (463), Expect = 5.506e-48
Identity = 101/234 (43.16%), Postives = 137/234 (58.55%), Query Frame = 0

Query:  438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL--LPS--KKQTLLFSATFPEQVKTLTHELLNDPI--EVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDH 665
            +R G ++LVATPGRL DL+    I L  VK LVLDEADRML +GF  ++  I++   +PS   +QTL+FSATFP +++ L  + L D +   V    + +  + Q++  VE   K   L  L+        LIFV  K + + L D L   G  A   HGD+ QG R R L  FK+G   +L+AT +AARGLDI  +  VINFDLP    DY+HRIGR+GRAG  G+A +  + 
Sbjct:  289 MRYGCNLLVATPGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEGSDMPSVDNRQTLMFSATFPSEIQHLASDFLKDYVFLSVGRVGSTSENITQKILYVEDFDKNDTLLDLLAASNEGLTLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNR 522

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|122206897|sp|Q2R1M8.1|RH52C_ORYSJ (RecName: Full=DEAD-box ATP-dependent RNA helicase 52C)

HSP 1 Score: 242.276 bits (617), Expect = 2.540e-69
Identity = 148/423 (34.99%), Postives = 218/423 (51.54%), Query Frame = 0

Query:   13 FSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLL----PSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHQWRQA---------LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 420
            F+++ L   L   +   +Y +PTP+Q   IP  LAGRDL+A A TGSGKTAAF  P++  I    P  R              P R                  G ++T C                    L+ +P  TREL+ Q+ +  + ++  +   ++ V  +GG  +N Q++ L  G DILVATPGRL+DL+    + L  ++ L LDEADRML +GF  ++  I++ +    P  +QT+LFSATFP++++ +  + L + I + +    +ST  +VQRV  V++  K + L  L+  H  R +         L+FV  K   + L   L   G  A   HGD+ Q  R   L  FKSG   +L+ATD+AARGLDI  +  V+NFDLP    DY+HRIGR+GRAG+ GLA +  +  +
Sbjct:  157 FAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGPPAQR--------------PQR------------------GGMRTACPLA-----------------LILSP--TRELSMQIHEEARKFS--YQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLL--HAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENN 524

HSP 2 Score: 177.948 bits (450), Expect = 3.204e-46
Identity = 100/245 (40.82%), Postives = 143/245 (58.37%), Query Frame = 0

Query:  438 LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLL----PSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANAST--LVQRVFEVEKGRKTALLAHLIQQHEWRQA---------LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHED 667
            L  G DILVATPGRL+DL+    + L  ++ L LDEADRML +GF  ++  I++ +    P  +QT+LFSATFP++++ +  + L + I + +    +ST  +VQRV  V++  K + L  L+  H  R +         L+FV  K   + L   L   G  A   HGD+ Q  R   L  FKSG   +L+ATD+AARGLDI  +  V+NFDLP    DY+HRIGR+GRAG+ GLA +  +  +
Sbjct:  282 LERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLL--HAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENN 524

[Close]

BLAST of rna helicase vs. nr
Match: gi|656279300|ref|WP_029224953.1| (ATP-dependent helicase [Vibrio splendidus] >gi|1067294233|gb|OED73362.1| RNA helicase [Vibrio splendidus ZS-139])

HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 369/433 (85.22%), Postives = 374/433 (86.37%), Query Frame = 0

Query:    4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436
            MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGN+VSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP        ++ D + S A+                                               KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD
Sbjct:    1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 379

HSP 2 Score: 573.548 bits (1477), Expect = 0.000e+0
Identity = 282/299 (94.31%), Postives = 289/299 (96.66%), Query Frame = 0

Query:  434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKK-KKAPKNQDVWLRN 731
            ++  LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+REQ+EGFEVDEEA A LVAALKPVAPP GTGKKKK KKA  N D+WLR+
Sbjct:  130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDREQVEGFEVDEEAAAELVAALKPVAPPEGTGKKKKNKKAQTNHDIWLRD 428

[Close]

BLAST of rna helicase vs. nr
Match: gi|218324808|emb|CAV26511.1| (putative ATP-dependent RNA helicase [Vibrio tasmaniensis LGP32])

HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0
Identity = 368/436 (84.40%), Postives = 376/436 (86.24%), Query Frame = 0

Query:    1 LQLMTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436
            LQLMTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGN+VSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP        ++ D + S A+                                               KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGR+GEVGLALSLIDHEDYHHF IIEKKNKIRL+
Sbjct:   38 LQLMTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLIDHEDYHHFTIIEKKNKIRLE 419

HSP 2 Score: 601.668 bits (1550), Expect = 0.000e+0
Identity = 294/299 (98.33%), Postives = 297/299 (99.33%), Query Frame = 0

Query:  434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732
            ++  LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGR+GEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN
Sbjct:  170 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 468

[Close]

BLAST of rna helicase vs. nr
Match: gi|1041564731|ref|WP_065206091.1| (ATP-dependent helicase [Vibrio splendidus] >gi|1040457879|gb|OBT30849.1| RNA helicase [Vibrio splendidus])

HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 368/433 (84.99%), Postives = 374/433 (86.37%), Query Frame = 0

Query:    4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436
            MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP        ++ D + S A+                                               KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRL+
Sbjct:    1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLE 379

HSP 2 Score: 598.201 bits (1541), Expect = 0.000e+0
Identity = 293/299 (97.99%), Postives = 295/299 (98.66%), Query Frame = 0

Query:  434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732
            ++  LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRLEREQIEGFEVDEEATA LVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN
Sbjct:  130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLEREQIEGFEVDEEATAELVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 428

[Close]

BLAST of rna helicase vs. nr
Match: gi|937082233|ref|WP_054546896.1| (ATP-dependent helicase [Vibrio splendidus] >gi|934143720|gb|KPL94683.1| RNA helicase [Vibrio splendidus])

HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 367/433 (84.76%), Postives = 374/433 (86.37%), Query Frame = 0

Query:    4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436
            MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRR+GKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVC+FGGVSVNTQMQALRGGTDILVATP        ++ D + S A+                                               KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRL+
Sbjct:    1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRAGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCIFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLE 379

HSP 2 Score: 597.045 bits (1538), Expect = 0.000e+0
Identity = 292/299 (97.66%), Postives = 295/299 (98.66%), Query Frame = 0

Query:  434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732
            ++  LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRLEREQIEGFEVDEEATA LVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN
Sbjct:  130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLEREQIEGFEVDEEATAELVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 428

[Close]

BLAST of rna helicase vs. nr
Match: gi|1330682113|ref|WP_102551366.1| (ATP-dependent helicase [Vibrio splendidus] >gi|1327095173|gb|PMM62595.1| RNA helicase [Vibrio splendidus])

HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 368/433 (84.99%), Postives = 373/433 (86.14%), Query Frame = 0

Query:    4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436
            MTNTTTPTNFSDLGLISPL ARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGN+VSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP        ++ D + S A+                                               KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD
Sbjct:    1 MTNTTTPTNFSDLGLISPLTARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 379

HSP 2 Score: 575.089 bits (1481), Expect = 0.000e+0
Identity = 283/299 (94.65%), Postives = 290/299 (96.99%), Query Frame = 0

Query:  434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKK-KKAPKNQDVWLRN 731
            ++  LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+REQ+EGFEVDEEATA LVAALKPVAPP GTGKKKK KKA  N D+WLR+
Sbjct:  130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDREQVEGFEVDEEATAELVAALKPVAPPEGTGKKKKNKKAQTNHDIWLRD 428

[Close]

BLAST of rna helicase vs. nr
Match: gi|1330711260|ref|WP_102576225.1| (ATP-dependent helicase [Vibrio splendidus] >gi|1326861923|gb|PMK37173.1| RNA helicase [Vibrio splendidus])

HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 368/433 (84.99%), Postives = 373/433 (86.14%), Query Frame = 0

Query:    4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436
            MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGN+VSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP        ++ D + S A+                                               KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRS SDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD
Sbjct:    1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSSSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 379

HSP 2 Score: 572.392 bits (1474), Expect = 0.000e+0
Identity = 282/299 (94.31%), Postives = 289/299 (96.66%), Query Frame = 0

Query:  434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKK-KKAPKNQDVWLRN 731
            ++  LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRS SDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+REQ+EGFEVDEEATA LVAALKPVAPP GTGKKKK KKA  N D+WLR+
Sbjct:  130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSSSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDREQVEGFEVDEEATAELVAALKPVAPPEGTGKKKKNKKAQTNHDIWLRD 428

[Close]

BLAST of rna helicase vs. nr
Match: gi|1197840948|ref|WP_086773860.1| (ATP-dependent helicase [Vibrio sp. corallo1])

HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 367/433 (84.76%), Postives = 374/433 (86.37%), Query Frame = 0

Query:    4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436
            MTNTTTPTNFSDLGLISPLMARL+ELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ+IHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP        ++ D + S A+                                               KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD
Sbjct:    1 MTNTTTPTNFSDLGLISPLMARLSELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQKIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 379

HSP 2 Score: 592.423 bits (1526), Expect = 0.000e+0
Identity = 289/299 (96.66%), Postives = 294/299 (98.33%), Query Frame = 0

Query:  434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732
            ++  LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+REQIEGFEVDEEATA L+AALKPVAPPAGTGKKKKKKAP+NQDVWL NN
Sbjct:  130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDREQIEGFEVDEEATAELIAALKPVAPPAGTGKKKKKKAPQNQDVWLNNN 428

[Close]

BLAST of rna helicase vs. nr
Match: gi|1196329213|ref|WP_086050984.1| (ATP-dependent helicase [Vibrio alginolyticus] >gi|1190171324|gb|ARP40412.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus])

HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 367/433 (84.76%), Postives = 373/433 (86.14%), Query Frame = 0

Query:    4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436
            MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP        ++ D + S A+                                               KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+
Sbjct:    1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSKAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLE 379

HSP 2 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 291/299 (97.32%), Postives = 293/299 (97.99%), Query Frame = 0

Query:  434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTGKKKKKKAPKNQDVWLRNN 732
            ++  LRGGTDILVATPGRLLDLISS AIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATA LVAALKPVAPPAGTGKKKKKKA  NQDVWLRNN
Sbjct:  130 QMQALRGGTDILVATPGRLLDLISSKAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAELVAALKPVAPPAGTGKKKKKKAQTNQDVWLRNN 428

[Close]

BLAST of rna helicase vs. nr
Match: gi|914629045|ref|WP_050620773.1| (ATP-dependent helicase [Vibrio sp. J2-3] >gi|857692404|emb|CDT79554.1| putative ATP-dependent RNA helicase [Vibrio sp. J2-3])

HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 367/433 (84.76%), Postives = 374/433 (86.37%), Query Frame = 0

Query:    4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436
            MTNTTTPTNFSDLGLISPLMARL+ELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ+IHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP        ++ D + S A+                                               KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD
Sbjct:    1 MTNTTTPTNFSDLGLISPLMARLSELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQKIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 379

HSP 2 Score: 588.186 bits (1515), Expect = 0.000e+0
Identity = 289/300 (96.33%), Postives = 294/300 (98.00%), Query Frame = 0

Query:  434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTG-KKKKKKAPKNQDVWLRNN 732
            ++  LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRL+REQIEGFEVDEEATA L+AALKPVAPPAGTG KKKKKKAP+NQDVWL NN
Sbjct:  130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLDREQIEGFEVDEEATAELIAALKPVAPPAGTGKKKKKKKAPQNQDVWLNNN 429

[Close]

BLAST of rna helicase vs. nr
Match: gi|515648520|ref|WP_017081120.1| (ATP-dependent helicase [Vibrio splendidus] >gi|1067450501|gb|OEF20749.1| RNA helicase [Vibrio splendidus 5S-101])

HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 367/433 (84.76%), Postives = 374/433 (86.37%), Query Frame = 0

Query:    4 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHQWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLD 436
            MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRR+GKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP        ++ D + S A+                                               KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQH+WRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRL+
Sbjct:    1 MTNTTTPTNFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRAGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILVATP-------GRLLDLISSNAI-----------------------------------------------KLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLE 379

HSP 2 Score: 590.497 bits (1521), Expect = 0.000e+0
Identity = 291/300 (97.00%), Postives = 294/300 (98.00%), Query Frame = 0

Query:  434 RLDPLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNKIRLEREQIEGFEVDEEATAALVAALKPVAPPAGTG-KKKKKKAPKNQDVWLRNN 732
            ++  LRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHF IIEKKNKIRLEREQIEGFEVDEEATA L+AALKPVAPPAGTG KKKKKKAPKNQDVWL NN
Sbjct:  130 QMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNKIRLEREQIEGFEVDEEATAELIAALKPVAPPAGTGKKKKKKKAPKNQDVWLNNN 429

The following BLAST results are available for this feature:

BLAST of rna helicase vs. L. salmonis genes
BLAST of rna helicase vs. SwissProt
BLAST of rna helicase vs. nr

BLAST of rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000006615	3.133e-40	30.32	supercontig:LSalAtl2s:LSalAtl2s364:491177:493327:-...	[more]
EMLSAG00000012740	4.586e-37	29.69	supercontig:LSalAtl2s:LSalAtl2s967:89676:95604:1 g...	[more]
EMLSAG00000007706	1.545e-36	35.42	supercontig:LSalAtl2s:LSalAtl2s449:21910:24507:-1 ...	[more]
EMLSAG00000010227	3.843e-36	27.10	supercontig:LSalAtl2s:LSalAtl2s679:403636:405959:-...	[more]
EMLSAG00000010426	6.005e-34	30.60	supercontig:LSalAtl2s:LSalAtl2s690:265412:268192:-...	[more]

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BLAST of rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|548730\|sp\|P25888.3\|RHLE_ECOLI	5.081e-96	41.81	RecName: Full=ATP-dependent RNA helicase RhlE	[more]
gi\|32171494\|sp\|Q8XA87.3\|DEAD_ECO57	4.828e-78	36.07	RecName: Full=ATP-dependent RNA helicase DeaD; Alt...	[more]
gi\|71154182\|sp\|P0A9P7.2\|DEAD_ECOL6	5.637e-78	36.07	RecName: Full=ATP-dependent RNA helicase DeaD; Alt...	[more]
gi\|8928554\|sp\|P33906.3\|DEAD_KLEPN	1.187e-77	36.07	RecName: Full=ATP-dependent RNA helicase DeaD; Alt...	[more]
gi\|134039178\|sp\|P96614.2\|CSHA_BACSU	1.839e-72	32.64	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]
gi\|81675946\|sp\|Q5L3G9.1\|CSHA_GEOKA	1.383e-71	32.64	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]
gi\|75535255\|sp\|Q9Z6C9.1\|CSHA_LACRE	6.413e-71	33.33	RecName: Full=ATP-dependent RNA helicase CshA; Alt...	[more]
gi\|143456452\|sp\|Q0DB53.2\|RH52A_ORYSJ	5.185e-70	35.29	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]
gi\|74660335\|sp\|Q6CLR3.1\|DED1_KLULA	1.220e-69	37.56	RecName: Full=ATP-dependent RNA helicase DED1	[more]
gi\|122206897\|sp\|Q2R1M8.1\|RH52C_ORYSJ	2.540e-69	34.99	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]

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BLAST of rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|656279300\|ref\|WP_029224953.1\|	0.000e+0	85.22	ATP-dependent helicase [Vibrio splendidus] >gi\|106...	[more]
gi\|218324808\|emb\|CAV26511.1\|	0.000e+0	84.40	putative ATP-dependent RNA helicase [Vibrio tasman...	[more]
gi\|1041564731\|ref\|WP_065206091.1\|	0.000e+0	84.99	ATP-dependent helicase [Vibrio splendidus] >gi\|104...	[more]
gi\|937082233\|ref\|WP_054546896.1\|	0.000e+0	84.76	ATP-dependent helicase [Vibrio splendidus] >gi\|934...	[more]
gi\|1330682113\|ref\|WP_102551366.1\|	0.000e+0	84.99	ATP-dependent helicase [Vibrio splendidus] >gi\|132...	[more]
gi\|1330711260\|ref\|WP_102576225.1\|	0.000e+0	84.99	ATP-dependent helicase [Vibrio splendidus] >gi\|132...	[more]
gi\|1197840948\|ref\|WP_086773860.1\|	0.000e+0	84.76	ATP-dependent helicase [Vibrio sp. corallo1]	[more]
gi\|1196329213\|ref\|WP_086050984.1\|	0.000e+0	84.76	ATP-dependent helicase [Vibrio alginolyticus] >gi\|...	[more]
gi\|914629045\|ref\|WP_050620773.1\|	0.000e+0	84.76	ATP-dependent helicase [Vibrio sp. J2-3] >gi\|85769...	[more]
gi\|515648520\|ref\|WP_017081120.1\|	0.000e+0	84.76	ATP-dependent helicase [Vibrio splendidus] >gi\|106...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold554_size137761	supercontig	scaffold554_size137761:74928..77387 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold554_size137761-snap-gene-0.2-mRNA-1	maker-scaffold554_size137761-snap-gene-0.2-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold554_size137761:74928..77387+

gene from alignment at scaffold554_size137761:74928..77387+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold554_size137761-snap-gene-0.2 ID=maker-scaffold554_size137761-snap-gene-0.2|Name=rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=2460bp|location=Sequence derived from alignment at scaffold554_size137761:74928..77387+ (Tigriopus kingsejongensis)
CTTTGAGTTCCTGCAATTAATGACTAACACCACAACACCAACCAACTTCT
CTGATCTTGGCTTAATCTCTCCTTTGATGGCTCGCTTAACAGAGCTTGAA
TACCAACAGCCAACGCCTATCCAAGCGCAAGTTATTCCAAGTGTGTTAGC
AGGACGCGACCTAATTGCAGGTGCAAATACGGGTTCAGGTAAAACCGCAG
CATTTGCACTTCCACTGTTACAGCAGATCCATGAAGATGCACCTTTAGAC
CGTCGTTCGGGTAAAGGTAACTTTGTGTCTGGTCTTATCTTAGTTCCTAC
TCGTGAGCTTGCTAAGCAAGTGGCTGACAGCGTTAAGTCTTACGCAGTAC
ACTTCAATGGTGCGATCAAAACGGTTTGTGTATTTGGTGGTGTATCGGTA
AACACTCAGATGCAAGCGCTACGTGGCGGCACTGATATCTTGGTGGCAAC
ACCGGGTCGTTTGCTGGATCTTATCTCAAGCAACGCAATCAAACTTGATA
AAGTTAAAACGCTNNNNNNNNNNNNNNGTGCTTTTTGACAAAAACCTGAT
TTTGGGTAACAAAATAGGCCACAGGGCTATTCCCAAAATGAATTGGTGAT
ATTCTAAAATTGGTAACTTTGTGTCTGGTCTTATCTTAGTTCCTACTCGT
GAGCTTGCTAAGCAAGTGGCTGACAGCGTTAAGTCTTACGCAGTACACTT
CAATGGTGCGATCAAAACGGTTTGTGTATTTGGTGGTGTATCGGTAAACA
CTCAGATGCAAGCGCTACGTGGCGGCACTGATATCTTGGTGGCAACACCG
GGTCGTTTGCTGGATCTTATCTCAAGCAACGCAATCAAACTTGATAAAGT
TAAAACGCTAGTGCTTGATGAAGCGGACCGCATGTTGAGCCTTGGCTTTA
CAGAAGAACTAGACGCGATCTTGAAACTTCTTCCTAGCAAAAAGCAAACC
TTGTTGTTCTCTGCGACTTTCCCAGAGCAAGTTAAAACATTAACTCACGA
ATTACTGAACGACCCGATTGAAGTTCAACTTCAAAGTGCAAACGCGAGCA
CATTGGTGCAGCGTGTATTCGAAGTCGAGAAAGGACGCAAGACAGCTCTG
CTAGCACACCTGATTCAACAACACCAATGGCGACAAGCTCTGATCTTCGT
TAATGCGAAAAACAGCTGTGAGCACTTGGCAGACAAGCTTTATAAGCGCG
GTATCATCGCAGAAGTATTCCACGGTGATAAAGGGCAGGGTTCACGTACT
CGTATCCTTGAAGATTTCAAATCTGGCGAGATTGACGTTCTAATCGCGAC
AGACATCGCTGCTCGTGGCTTGGACATTGAAAAACTTCCAGTTGTAATCA
ACTTTGATTTACCAAGAAGCCCATCGGATTACATGCACCGTATCGGTCGA
AGTGGCCGTGCAGGTGAGGTTGGCCTTGCGTTGTCATTGATCGATCACGA
AGATTACCATCACTTCAAGATCATCGAGAAGAAGAACAAAATCCGTCTTG
ACCGTTATCTTGCTTCAATACATTTTTATAATGCCGATGATGACGGAGCT
NTCGGTAAACACTCAGATGCAAGCGCTACGTGGCGGCACTGATATCTTGG
TGGCAACACCGGGTCGTTTGCTGGATCTTATCTCAAGCAACGCAATCAAA
CTTGATAAAGTTAAAACGCTAGTGCTTGATGAAGCGGACCGCATGTTGAG
CCTTGGCTTTACAGAAGAACTAGACGCGATCTTGAAACTTCTCCCTAGCA
AAAAGCAAACCTTGCTGTTCTCTGCGACTTTCCCAGAGCAAGTTAAAACA
TTAACTCACGAATTACTGAACGACCCGATTGAAGTTCAACTTCAAAGTGC
AAACGCGAGCACGCTAGTTCAGCGTGTATTCGAAGTAGAAAAAGGTCGTA
AGACCGCATTGCTAGCGCACCTGATTCAACAACACGAATGGCGACAAGCT
CTGATCTTCGTGAATGCGAAGAACAGCTGTGAGCACTTGGCAGACAAGCT
TTACAAGCGCGGTATTATCGCGGAAGTATTCCACGGTGATAAAGGGCAGG
GTTCACGTACTCGCATCCTTGAAGATTTCAAATCTGGTGAGATCGACGTT
CTTATCGCGACAGACATCGCGGCACGTGGTCTGGATATCGAAAAGCTACC
AGTAGTAATCAACTTTGACCTACCACGTAGCCCATCAGACTACATGCATC
GTATTGGCCGAAGTGGTCGTGCGGGTGAGGTTGGTCTAGCGCTATCTTTG
ATCGACCACGAAGATTACCATCACTTCACAATCATTGAGAAGAAGAACAA
AATCCGTCTTGAGCGTGAGCAAATTGAAGGTTTTGAAGTGGATGAAGAGG
CAACCGCTGCACTTGTTGCTGCATTAAAACCCGTTGCGCCACCGGCTGGT
ACAGGCAAGAAGAAAAAGAAGAAAGCACCTAAAAACCAAGATGTTTGGTT
GAGAAACAAC

Synonyms

The feature 'rna helicase' has the following synonyms


Synonym
Tk04067

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