transmembrane protein , maker-scaffold559_size137194-snap-gene-0.32 (gene) Tigriopus kingsejongensis

Overview
Nametransmembrane protein
Unique Namemaker-scaffold559_size137194-snap-gene-0.32
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of transmembrane protein vs. L. salmonis genes
Match: EMLSAG00000009342 (supercontig:LSalAtl2s:LSalAtl2s598:147100:245129:1 gene:EMLSAG00000009342 transcript:EMLSAT00000009342 description:"maker-LSalAtl2s598-augustus-gene-2.20")

HSP 1 Score: 103.219 bits (256), Expect = 1.179e-26
Identity = 61/109 (55.96%), Postives = 75/109 (68.81%), Query Frame = 0 
Query:   35 ASDSGCNTSCATDEDILEAYQDFRGEKVADTKSRLQDLVSSLPRANDKSLLLQSVALFETLLKRIHDLQSENEILKKKVEVESDKRSSMNDQIVLELEISRKDLQEARQ 143
              DSG  +S   DED+LE + DFR EKV+ TKSRLQ LV + P+ANDKSLLLQ+VALFE+LL +I DLQ ENE LKK          +  D IVL+LE SR+ L++A Q
Sbjct:  313 GCDSG-TSSITNDEDLLEIHNDFRKEKVSTTKSRLQALVETTPQANDKSLLLQTVALFESLLSKIQDLQKENEQLKKS--------GNRFDDIVLDLEDSRRKLEDALQ 412
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BLAST of transmembrane protein vs. nr
Match: gi|1325277220|ref|XP_023323249.1| (golgin subfamily A member 6-like protein 22 [Eurytemora affinis])

HSP 1 Score: 78.1814 bits (191), Expect = 3.978e-14
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 0 
Query:   37 DSGCNTSCATDEDILEAYQDFRGEKVADTKSRLQDLVSSLPRANDKSLLLQSVALFETLLKRIHDLQSENEILK 110
            DSGC +S  T EDI+E ++DFR EK+ DTK +L +L+  +P    KSLLLQ+VALFETLL RI  ++ EN+ L+
Sbjct:   76 DSGC-SSQTTLEDIIETHRDFRNEKIQDTKLKLHELMKHIPEPGGKSLLLQTVALFETLLARIKLMKEENQELQ 148
The following BLAST results are available for this feature:
BLAST of transmembrane protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000093421.179e-2655.96supercontig:LSalAtl2s:LSalAtl2s598:147100:245129:1... [more]
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BLAST of transmembrane protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transmembrane protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325277220|ref|XP_023323249.1|3.978e-1454.05golgin subfamily A member 6-like protein 22 [Euryt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold559_size137194supercontigscaffold559_size137194:75065..75611 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold559_size137194-snap-gene-0.32-mRNA-1maker-scaffold559_size137194-snap-gene-0.32-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold559_size137194:75065..75611-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold559_size137194-snap-gene-0.32 ID=maker-scaffold559_size137194-snap-gene-0.32|Name=transmembrane protein |organism=Tigriopus kingsejongensis|type=gene|length=547bp|location=Sequence derived from alignment at scaffold559_size137194:75065..75611- (Tigriopus kingsejongensis)
GACAAACAATCCTCAGTCCGACCCTCAGGACCACACGACAGAGGCGATTT
GGACCAAGTGCATCATCGCTCCGATTGGAGCCCATCGACCAGTCTCCCGC
ATGCCAATGACTCTCATCGCCATGAAGAACATCCTCTCAGCCCAGACGAA
GCCAGCGACTCTGGTTGCAACACATCTTGTGCCACGGATGAGGATATCTT
GGAGGCGTATCAAGACTTTCGAGTGGGTGGCCGCCGACTGAGGGTTGATT
CGAGGCCAGGGGCATTCAATCGGTCTTTCTCTATTGTAGGGCGAGAAAGT
GGCCGATACCAAGAGCCGATTGCAGGACTTGGTGTCATCCTTACCCAGAG
CCAACGATAAGTCGCTCCTCCTTCAGAGTGTAGCCCTTTTTGAGACTCTT
TTGAAAAGGATTCACGACCTTCAGAGCGAAAACGAGATCCTTAAGAAGAA
AGTCGAGGTCGAATCAGACAAGAGATCTTCAATGAACGACCAAATCGTTT
TGGAGCTCGAGATTTCAAGGAAAGATCTACAGGAAGCCAGGCAGGCA
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Synonyms
The feature 'transmembrane protein ' has the following synonyms
Synonym
Tk04622
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