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Associated RNAi Experiments
Homology
BLAST of Xylanase vs. L. salmonis genes
Match: EMLSAG00000012421 (supercontig:LSalAtl2s:LSalAtl2s90:34219:73196:1 gene:EMLSAG00000012421 transcript:EMLSAT00000012421 description:"maker-LSalAtl2s90-augustus-gene-0.4") HSP 1 Score: 48.9062 bits (115), Expect = 4.043e-7 Identity = 34/125 (27.20%), Postives = 57/125 (45.60%), Query Frame = 0
Query: 50 SNLAIDTFSNRDKTIFIKTHI--NEVYPEHVLVYRDK----NGGADNRNSRLSDVIQN-CQLAYRAGTRFNPDEVTFEGSKEAHPHPGGVGPNVQGGRKKSAGKQRKSRREDEGAVITQQPQSTV 167
+ L +++++N D F K NE+YPE +L+YR K +G D RL + N ++YR G ++NP+E + G + NV ++ K+ + AVI P S +
Sbjct: 163 TGLPMNSWTNEDHDCFFKLSQSDNEIYPETILLYRRKGEENDGPGDTXKPRLESFLSNTVAISYRTGKKYNPEEDLWVGKTIVSREKNELKKNVSEHQEDKKIKREITSESTTQAVIEMIPLSKL 287
The following BLAST results are available for this feature:
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold72_size415059 | supercontig | scaffold72_size415059:274392..278333 + |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Note | P:xylan catabolic process |
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold72_size415059:274392..278333+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >maker-scaffold72_size415059-snap-gene-2.23 ID=maker-scaffold72_size415059-snap-gene-2.23|Name=Xylanase|organism=Tigriopus kingsejongensis|type=gene|length=3942bp|location=Sequence derived from alignment at scaffold72_size415059:274392..278333+ (Tigriopus kingsejongensis)
ATGCTGGTGGCTCGAGTGGCCGTGGGCGTGAATCGAGATGTTGAAGATGA
GATTTGGGAAAAGGCCTTCTCCGGACCGCGCCCAGAGTTTCTCCTCCGAC
TTCCCTACTTTTTACACACGGAGACGCCTCAGGAGGATGGAGAACAGAGC
AATTTGGCCATTGATACCTTCTCGAACCGCGATAAAACCATCTTTATTAA
GACCCATATCAACGAGGTCTACCCCGAGCACGTGTTGGTCTATCGCGACA
AAAACGGTGAGTCCCAGCCCAAGGCATTGCGAGAGGCAAAATCAAGCCCT
GTGACGACGCTCCGCTCTCTTCAAGTTTATTCCCAACGCAAACAATATTT
TACTGGAGCATCGTCAGTATTGTCACACCTCCTCCCCACCCTTCTCGGCT
CCCATTTGTGCTTATTTATTTTCTCTCCGCTCTTTTCACCCCATAAATGA
TCAACAGGGGGAGCTGATAATCGGAACTCCCGGCTTTCGGATGTCATCCA
GAACTGCCAACTCGCCTATCGTGCCGGAACTCGCTTTAATCCCGATGAGG
TCACATTTGAGGGATCCAAGGAGGCTCACCCTCACCCAGGGGGAGTTGGT
CCCAATGTCCAAGGCGGGCGCAAGAAAAGCGCTGGAAAACAGCGGAAATC
CAGGAGGGAGGATGAAGGCGCTGTCATCACCCAACAACCCCAATCGACCG
TCCCAGACACCCAGAAGGGGGGTGAAGATAATGGGGCCAAGGGAGCAATC
CCTAAGAGACACGCCACTAAAGATACCAAGGTAATGGCCAGAACTTGTCA
ATGACACTCGAACGCAATGCAATCCAGTCCGATTTACGGTCGCATCTGGT
TGTATCCCGAAGGCGACACCCACTTTCCGGCGAGTGCCCTAAAAAGGTTT
CCAACGCGCCACGTCAGTTTGAGGGACTCTCACCCCCTGCCATGGCGAGA
CATTCAATTGTAGTACTTCTGGCCACAATTGTGCCATAAAAAGCCAACAA
TGATGGGGACACAACACGTCAGAGGGAATTGTCAATGCTGGCTGGCGAAT
CGCGTTGGAGACTAGTAGGCCTCTGTGAGCCGTGTCATGATCGGATCGAG
GTGTTCAGGATGGAAACGCCAGTATTTCTGGCCAGGTTGAAAGCATCGCC
CAATATACTTGGGTTGCCGAGCGAAAAGGGCCATAAAGAGGGAGCCTGTC
TCTGATTTATGTGTGGGGGTCCAAGAGAGGGGGTTGTGAGAGCCATTCTT
ACAACTTTGACATCATACTACATACAGTACTGCTTCGAGCTCAGAGGCCA
ATGGGATAATAAAGACCCAATATGGCATCCCCAACCAGTTCCCCAATTTT
GGAACCGGAAACTTTTGATGTGTACTGGGCACATGCATTGAGGTGGTGGG
CAATGCTGTCGCCAGTGACGACTGCCCTCGAGCGTCTCCGATAGATTTCC
GCTTGAGTGAGATTGGGAATTGATCAGAAACAACGGCCCAGAGTTGAAGG
TGCCGAGTGTGAGGGTAGATTTCTCCACCACTTGGAAGGCTTGCATTTGG
ACACGCTGCCAAGTGCACAGCGCATGGTCCATAGAGTTATTCAATATAAT
TTTGGCACCCTGAGTGCACTTCTTCGATTGGCTGTGAAGTGTGTGCTTTC
GACGAGTGAACTCAACACTTCTTCCAACCAGGATCTCGAAGATCCCAATC
GTGTTTCCAAGGATGCTTGTGCCTCAGTAAACTGGGGCGGAAGGTAAACA
ATGGTCCCTTCTGCACCCAAGGTGAATGGAATAGGCCAGCTTCAGAGCTA
GTCATCGGAAATTGTGAGCAGAATGAAGAGGAATTTCCGGAATAGGTGTC
AGCCTTGACGCTTGATGTATTGATATCGATATTTCCTGCCTCTCTGGGAT
TGGTTCACGCAATCGTGCAGTTCTCCGTCACACGAATACAATTTTCCAGG
CGAGGTATGGGACCAAACGAAGACGTGTGTCCCTTGGCCACAAGATTATT
CGCTTTTCAAGGATCAAGGCCCACATGTGGGCGATGATTGTATCGCATGT
GAAAAACCACTTTGCATAATCACAACGGCCTTAAAATGAAGCAGTAACTG
GGTGGTCCAGCGAAGCCAAGTCTCTCCAGCTGGGCCTTCTTGCGGTCACT
CCGACAAGAGTTGGGTGAGAAGTGAGTAGTTGGACGTTGGCCTTGGACCT
AGGCTATTCCATTGGACCTAGCCGCCCATGAACAGCCCATTTTGAAGGCT
CAACAGCCATGCATCAGGGCCGTGAGTGTGCGTGTGTGTACTGGGGCCGA
GGAGGGCAGGGGCCCGGGAGCGAAATCACCTCTTGATCCCTGATTTAGTT
CCAAGATTCGGTGAAGAAAGACCCAACTCGATGAAAGAAGACCATCAACT
TTTTATTCCCCACGTTTTACGTTTTTGCCCAACTTCGCCCCCGGATCTTC
TCAATGACAATTTTCCACTCTCCATCCAACAATAACCGTCGGAGTCGACG
AAGACCACGACGACGAGATCTTGGAACTAGGCGGAAAGGAGTAGATGGAA
CAAGGTTATTGCCATCTATTCACTGGATTTGCCCTTCATCTCCCTCCAAA
GTGTGCCTGGGCAAGAAAATCACGAGGTTTGGCGCATTATTAAAACATGT
GCCACATGTTTTTAGTATCTCGCTAAACTATTAATGGAGCCCTGGGGAGG
GTTTGTGTCCTTTTTATTTGATGTATAGCACCCCTCGAGTGCTTGGAACA
TCACGGTGTTGTTCCGCTTCAGCACGAAACGAGAGAAGGAAGTTGTTCCA
CTTGGATCTTGAACGGGCCATAATCTCCGAAATCTGTTTGGCTTAATGTC
ACTATTAATGTTTGGCTCATTTCAATTTTCAAGAGCAAGGTAAAAAAGTT
GCCTTGAGGCCACCAAGCCTCCCCACTGTCGAGGATTCTTGGTCCAGAAT
CCTCGCTCAGCTCTAACCTTTTGAGGCCACCGGGTTAGTGCCCTGAGAGA
AGGTCTTGTCATATTCAGATGAAGTACCGCATTGGAGCGTGAAATTCAGT
TCCGTGCAATATCCACCACCACCACCATCCTCGGCCCAGGGTAAATGATC
CAAGTTTTCCAATAGAGAAATTTCAATTTTTTCTACCAGTGCCGTAAATG
CTCAAGGGCAACTCTCTCTCTCTCTCTCTCTCTCTATCGGGTAAGGCAGC
GGGCAGCGGGCCCAGACAATAACTCTGCGAGGAGCCTATTAAGGTTAAAG
CGATAAAATGCGCTAAAAAAGAAACCCAATATTATTTACGTCCTCGGAGG
ATGGTCGGGCCGAGCTGTGGCCCCCATCCATCCAGTAAAGCCCAATTGCT
CTGTGACCTGTAAGAGCGATACAGCCTTAATCCTCACGGCTAGAGTGTCA
TCGTGAGTCCCGGTTATTTGGCCAAAAGTGGATCATAGCAAAAATTGCCG
GGACCACGCTCCAAACGCGCCTTGGTCCACATTCGATACAACCCCGAGGT
TTTGGGGTCAAGGCCTCGGCTGTGCCAATTTGCTGATGCTTGGCTCAGTA
ATTCCCCGTTATGTGGGACATAGTTCATGTACATACAACAATGGTCCCGC
TGGGTTGTCCACAGTCTCATTGGGGAGGAACATGAGCGAATGATTAATGA
TGGTTGGGATCATCTTTGCCATTCATCAATACGCACCACATTAACTCACA
TTGACTCGCTCCTACTCGAATCTCTTCTGGGTTCCAGGTGGAGAAGGAGC
ACGAGGACGAGATTCTCACCGAGACCCAGCCGTTCCTGGATCACAGTGGT
TCCAACTCGCCAAACCAATCGAGGCCGGATCACATGAGGATGCAAATCAG
AGCGGATATCGTGAGGGAGCACAATAAGAAAACCCGATTTGCCCACCACG
AGGAATAAGACTATGGTCCAAGATATTCATGGAACAATGGAG back to top
Synonyms
The feature 'Xylanase' has the following synonyms
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