1-pyrroline-5-carboxylate partial, maker-scaffold8184_size2827-snap-gene-0.1 (gene) Tigriopus kingsejongensis
|
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 1-pyrroline-5-carboxylate partial vs. L. salmonis genes
Match: EMLSAG00000012849 (supercontig:LSalAtl2s:LSalAtl2s97:2071405:2074780:1 gene:EMLSAG00000012849 transcript:EMLSAT00000012849 description:"maker-LSalAtl2s97-snap-gene-20.33") HSP 1 Score: 48.1358 bits (113), Expect = 3.208e-8 Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 0
Query: 41 STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDF 74
S FQ +WKA+G NI NY +P++VGE GGK++
Sbjct: 94 SVPTFQWLWKAVGENISNYTGFPKLVGECGGKNY 127
BLAST of 1-pyrroline-5-carboxylate partial vs. SwissProt
Match: gi|30913150|sp|O74766.1|PUT2_SCHPO (RecName: Full=Probable delta-1-pyrroline-5-carboxylate dehydrogenase; Short=P5C dehydrogenase; AltName: Full=L-glutamate gamma-semialdehyde dehydrogenase) HSP 1 Score: 53.1434 bits (126), Expect = 1.715e-8 Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 0
Query: 36 GKHYS-STGVFQGMWKAIGNNIHN--YKSYPRIVGETGGKDF 74
G H++ ST VF+ +W IG N+ N Y++YP+IVGETGGK+F
Sbjct: 263 GLHFTGSTAVFRSLWGTIGENVANGKYRTYPKIVGETGGKNF 304
BLAST of 1-pyrroline-5-carboxylate partial vs. SwissProt
Match: gi|2494072|sp|P78568.1|PUT2_AGABI (RecName: Full=Delta-1-pyrroline-5-carboxylate dehydrogenase; Short=P5C dehydrogenase; AltName: Full=L-glutamate gamma-semialdehyde dehydrogenase) HSP 1 Score: 52.7582 bits (125), Expect = 2.343e-8 Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 0
Query: 38 HYS-STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDF 74
H++ ST VF+ +WK I +N+ YK YPRIVGETGGK++
Sbjct: 266 HFTGSTNVFKSLWKDISSNLDKYKVYPRIVGETGGKNW 303
BLAST of 1-pyrroline-5-carboxylate partial vs. nr
Match: gi|1123519633|ref|WP_074238516.1| (1-pyrroline-5-carboxylate dehydrogenase [Chitinophaga niabensis] >gi|1118754942|emb|SIN79013.1| delta-1-pyrroline-5-carboxylate dehydrogenase [Chitinophaga niabensis]) HSP 1 Score: 78.9518 bits (193), Expect = 5.168e-15 Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 0
Query: 30 CFCSDD--GKHYS-STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDFLICTR 79
CF D G H++ STGVFQ MWK IGNNIH YK+YPRIVGETGGKDF+I +
Sbjct: 252 CFAHPDFAGIHFTGSTGVFQTMWKTIGNNIHKYKTYPRIVGETGGKDFVIAHK 304
BLAST of 1-pyrroline-5-carboxylate partial vs. nr
Match: gi|736971686|ref|WP_034968108.1| (1-pyrroline-5-carboxylate dehydrogenase [Chryseobacterium sp. FH1] >gi|668739300|gb|KFC20526.1| 1-pyrroline-5-carboxylate dehydrogenase [Chryseobacterium sp. FH1]) HSP 1 Score: 78.5666 bits (192), Expect = 7.054e-15 Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0
Query: 36 GKHYS-STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDFLI 76
G H++ ST VFQGMWK IGNNIHNYKSYPRIVGETGGKDF++
Sbjct: 260 GLHFTGSTKVFQGMWKMIGNNIHNYKSYPRIVGETGGKDFVM 301
BLAST of 1-pyrroline-5-carboxylate partial vs. nr
Match: gi|1063977296|gb|ODS88646.1| (1-pyrroline-5-carboxylate dehydrogenase [Chryseobacterium sp. SCN 40-13]) HSP 1 Score: 77.7962 bits (190), Expect = 1.148e-14 Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0
Query: 36 GKHYS-STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDFLI 76
G H++ STGVFQGMWK IGNNIH YK+YPRIVGETGGKDF++
Sbjct: 260 GLHFTGSTGVFQGMWKMIGNNIHTYKTYPRIVGETGGKDFVM 301
BLAST of 1-pyrroline-5-carboxylate partial vs. nr
Match: gi|491056750|ref|WP_004918392.1| (1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|312445504|gb|ADQ81859.1| delta-1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer ATCC 11845 = DSM 15868] >gi|315023128|gb|EFT36141.1| delta-1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer RA-YM] >gi|325336366|gb|ADZ12640.1| NAD-dependent aldehyde dehydrogenase [Riemerella anatipestifer RA-GD] >gi|380460186|gb|AFD55870.1| deltagene-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer ATCC 11845 = DSM 15868] >gi|874269196|gb|AKP69096.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|885007947|gb|AKQ39452.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer Yb2] >gi|1005259569|gb|KYG13408.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039060445|gb|OBP38429.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039066558|gb|OBP44438.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039068564|gb|OBP46399.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039070939|gb|OBP48695.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039072366|gb|OBP50095.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039073832|gb|OBP51536.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039076052|gb|OBP53705.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039078941|gb|OBP56556.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039079510|gb|OBP57123.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039083268|gb|OBP60783.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039083497|gb|OBP61010.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039086522|gb|OBP63956.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1231767803|emb|SNV57182.1| 1-pyrroline-5-carboxylate dehydrogenase 1 [Riemerella anatipestifer]) HSP 1 Score: 77.411 bits (189), Expect = 1.395e-14 Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0
Query: 36 GKHYS-STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDFLI 76
G H++ ST VFQGMWK IG+NIHNYKSYPRIVGETGGKDF+I
Sbjct: 260 GLHFTGSTKVFQGMWKLIGDNIHNYKSYPRIVGETGGKDFVI 301
BLAST of 1-pyrroline-5-carboxylate partial vs. nr
Match: gi|441483541|gb|AGC40227.1| (NAD-dependent aldehyde dehydrogenase [Riemerella anatipestifer RA-CH-2]) HSP 1 Score: 77.411 bits (189), Expect = 1.399e-14 Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0
Query: 36 GKHYS-STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDFLI 76
G H++ ST VFQGMWK IG+NIHNYKSYPRIVGETGGKDF+I
Sbjct: 272 GLHFTGSTKVFQGMWKLIGDNIHNYKSYPRIVGETGGKDFVI 313
BLAST of 1-pyrroline-5-carboxylate partial vs. nr
Match: gi|874285098|gb|AKP70971.1| (1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer]) HSP 1 Score: 77.411 bits (189), Expect = 1.403e-14 Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0
Query: 36 GKHYS-STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDFLI 76
G H++ ST VFQGMWK IG+NIHNYKSYPRIVGETGGKDF+I
Sbjct: 282 GLHFTGSTKVFQGMWKLIGDNIHNYKSYPRIVGETGGKDFVI 323
BLAST of 1-pyrroline-5-carboxylate partial vs. nr
Match: gi|1273759497|gb|PIE50875.1| (1-pyrroline-5-carboxylate dehydrogenase [Flavobacteriales bacterium]) HSP 1 Score: 77.411 bits (189), Expect = 1.553e-14 Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0
Query: 36 GKHYS-STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDFLI 76
G H++ ST VFQGMWK IGNNIHNYK+YPRIVGETGGKDF++
Sbjct: 260 GLHFTGSTHVFQGMWKMIGNNIHNYKTYPRIVGETGGKDFIM 301
BLAST of 1-pyrroline-5-carboxylate partial vs. nr
Match: gi|1369140047|gb|PSK90048.1| (delta-1-pyrroline-5-carboxylate dehydrogenase [Taibaiella chishuiensis]) HSP 1 Score: 77.411 bits (189), Expect = 1.780e-14 Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0
Query: 30 CFCSDD--GKHYS-STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDFL 75
CF D G H++ STGVFQGMWK IGNNI YKSYPRIVGETGGKDF+
Sbjct: 252 CFAHKDFAGVHFTGSTGVFQGMWKTIGNNIAKYKSYPRIVGETGGKDFI 300
BLAST of 1-pyrroline-5-carboxylate partial vs. nr
Match: gi|1159274052|ref|WP_079206843.1| (1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer]) HSP 1 Score: 77.0258 bits (188), Expect = 2.293e-14 Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0
Query: 36 GKHYS-STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDFLI 76
G H++ ST VFQGMWK IG+NIHNYKSYPRIVGETGGKDF++
Sbjct: 260 GLHFTGSTKVFQGMWKLIGDNIHNYKSYPRIVGETGGKDFVV 301
BLAST of 1-pyrroline-5-carboxylate partial vs. nr
Match: gi|1039804095|ref|WP_064970635.1| (1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer] >gi|1039089352|gb|OBP66679.1| 1-pyrroline-5-carboxylate dehydrogenase [Riemerella anatipestifer]) HSP 1 Score: 77.0258 bits (188), Expect = 2.293e-14 Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0
Query: 36 GKHYS-STGVFQGMWKAIGNNIHNYKSYPRIVGETGGKDFLI 76
G H++ ST VFQGMWK IG+NIHNYKSYPRIVGETGGKDF++
Sbjct: 260 GLHFTGSTKVFQGMWKLIGDNIHNYKSYPRIVGETGGKDFVV 301 The following BLAST results are available for this feature:
BLAST of 1-pyrroline-5-carboxylate partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 1-pyrroline-5-carboxylate partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 2
BLAST of 1-pyrroline-5-carboxylate partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold8184_size2827:2322..2776- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold8184_size2827-snap-gene-0.1 ID=maker-scaffold8184_size2827-snap-gene-0.1|Name=1-pyrroline-5-carboxylate partial|organism=Tigriopus kingsejongensis|type=gene|length=455bp|location=Sequence derived from alignment at scaffold8184_size2827:2322..2776- (Tigriopus kingsejongensis)back to top Synonyms
The feature '1-pyrroline-5-carboxylate partial' has the following synonyms
Add to Basket
|