gamma-crystallin d, maker-scaffold94_size379870-snap-gene-2.29 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of gamma-crystallin d vs. L. salmonis genes
Match: EMLSAG00000004908 (supercontig:LSalAtl2s:LSalAtl2s2584:8224:8901:-1 gene:EMLSAG00000004908 transcript:EMLSAT00000004908 description:"snap_masked-LSalAtl2s2584-processed-gene-0.1") HSP 1 Score: 112.849 bits (281), Expect = 4.611e-31 Identity = 70/207 (33.82%), Postives = 105/207 (50.72%), Query Frame = 0 Query: 35 TLGLGRGSASNGQSIRCFDHADLSGEKLELDEKSVADLTTFNFDNQASACCFYGVWILYENPGYNNDNYQAAVYTGWGEEYCSSFPTTFDNKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSAIVNGCSPWTLYSEDNYKGNAICLHPADESN-CYPGFFPKPIDLGILANVVSSVKRGCHAKAIFLPR 240 +L + G + Q IR F +L G +L ++ DL F+N+A F G NY V WG+ + S + K SS+R +G D + + L Y G +G EQ Y ++P+LN+ KF +S I+ GC P+TLY ++N+ G IC++P S C PGF KP G A+ VSSV+ GC +K+ F+ + Sbjct: 6 SLTILVGISLGAQDIRLFSETNLQGTS-KLVSRNEEDLQLIGFNNKAKPA-FVG-------------NYNKMVTYVWGQNFKLSTMGGINGKVSSIRHSGVDD-LSANTLNFYEGPRSMGIEQNVYKDSPKLNYDKFDKSIIITGCKPFTLYEKENFGGKRICVYPNYTSTPCKPGFLEKPSAFGHFADQVSSVRLGCFSKSSFVAK 196
BLAST of gamma-crystallin d vs. L. salmonis genes
Match: EMLSAG00000000780 (supercontig:LSalAtl2s:LSalAtl2s1127:109598:110255:-1 gene:EMLSAG00000000780 transcript:EMLSAT00000000780 description:"snap_masked-LSalAtl2s1127-processed-gene-0.4") HSP 1 Score: 65.0846 bits (157), Expect = 2.021e-13 Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 0 Query: 128 SSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSAIVNGCSPWTLYSEDNYKGNAICLHPADESNCYPGFFPKPIDLGILANVVSSVKRGCHAKAIF 237 S +AG+P Y+ ++LY G F+G Q F D + + A++G G PW LYSE YKG+ I ++ + C P F+ + D+G VSS + C +K IF Sbjct: 39 SHFYYAGSPKNRTYNTISLYNGHGFMGNTQMF-DFSTGFS-AQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIF 146
BLAST of gamma-crystallin d vs. L. salmonis genes
Match: EMLSAG00000005933 (supercontig:LSalAtl2s:LSalAtl2s320:21267:21614:-1 gene:EMLSAG00000005933 transcript:EMLSAT00000005933 description:"augustus_masked-LSalAtl2s320-processed-gene-0.0") HSP 1 Score: 56.6102 bits (135), Expect = 7.672e-11 Identity = 32/92 (34.78%), Postives = 46/92 (50.00%), Query Frame = 0 Query: 122 TFDNKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSAIVNGCSPWTLYSEDNYKGNAICLHPADESNCYPGFFPK 213 T +N S++R P +++ + Y G F+ Q F A G+S IV C PW LYSE YKG+ I ++ + NC PGF+ K Sbjct: 16 TLENSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFYLK 106
BLAST of gamma-crystallin d vs. nr
Match: gi|1061461501|gb|ODM86602.1| (hypothetical protein Ocin01_20080 [Orchesella cincta]) HSP 1 Score: 92.0485 bits (227), Expect = 5.406e-19 Identity = 59/193 (30.57%), Postives = 88/193 (45.60%), Query Frame = 0 Query: 52 FDHADLSGEKLELDEKSVADLTTFNFDNQASACCFYGVWILYENPGYNNDNYQAAVYTGWGEE-YCSSFPTTFDNKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSAIVNGCSPWTLYSEDNYKGNAICLHPADESNCYPGFFPKPIDLGILANVVSSVKRGCHAKA---IFLPR 240 +D D G L L + S T +N++++A + C +G+WI Y+ + D A Y E YC + + K +S+R+ G E+ FY + P LNFA +S I+ G S WT+Y NY G CLH S+ P D+GI + + SV++GC +KA I LP Sbjct: 34 YDQNDQCGMALTLRDYSFNLGTQYNYNDRARSICIHGIWIFYDGTSFGRDTSGVAYYYNPNSELYCDNLFASISGKVTSVRYWGVA-------------------EEKFYADKPTLNFAGKHKSIIITGPSQWTVYEGSNYSGANKCLH---SSSGKATIIPDIADIGIRHHSLRSVRKGCWSKAEDIIVLPE 204
BLAST of gamma-crystallin d vs. nr
Match: gi|1215270837|gb|OXA57148.1| (hypothetical protein Fcan01_07781 [Folsomia candida]) HSP 1 Score: 90.5077 bits (223), Expect = 1.830e-18 Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = 0 Query: 59 GEKLELDEKSVADLTTFNFDNQASACCFYGVWILYENPGYNNDNYQAAVYTGWGEEYCSSFPTTFDNKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKF--GRSAIVNGCSPWTLYSEDNYKGNAICLHPADESNCYPGFFPKPIDLGILANVVSSVKRGC 231 G ++ DLT NFDN A +CC G WI Y + Y N + A Y+ C +F +N SS RFAG+ Y D + L++G +F G L+ + S IV+G SPWTLYS D++ G C+ P + P F+ +D+G + + S+++GC Sbjct: 40 GRTFSAVAQNYPDLTLVNFDNVARSCCIIGTWIFYGSKNYANFSNGVAAYSS-KSNGCFTFQNLTEN-VSSFRFAGSGKDYKQDFIDLFSGIFFTGVHLSTSMAVSNLSSLRLPGTTSIIVSGTSPWTLYSNDSFVGRRKCVFP--RAGQLPRFYRNTLDIGDI--LPKSIRKGC 208
BLAST of gamma-crystallin d vs. nr
Match: gi|1067106722|ref|XP_018013775.1| (PREDICTED: uncharacterized protein LOC108670793 [Hyalella azteca]) HSP 1 Score: 89.7373 bits (221), Expect = 3.277e-18 Identity = 70/233 (30.04%), Postives = 109/233 (46.78%), Query Frame = 0 Query: 7 MRWIVSLCLVLSASSALAQDKPKYNPIGTLGLGRGSASNGQSIRCFDHADLSGEKLELDEKS-VADLTTFNFDNQASACCFYGVWILYENPGYNNDNY-QAAVYTGWGEEYCSSFPTTFDNKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLN-FAKFGRSAIVNGCSPWTLYSEDNYKGNAICLHPADE-----SNCYPGFFPKPIDLGILANVVSSVKRGC 231 MR ++ L L +S + QD + + + ++ GE L + ++D T+ AS+ C GVW+LYE P Y+ Q+ V+ G G+ C P A+S+R AG+P ++ LTLYA +F E Y ++ P L F+ SA+V G PWT+Y+ D+Y G CL P + + G FP +LG + ++ SV+RGC Sbjct: 1 MRQVIKLLLFSCVASVICQDAGLWAEV--------------------YMEVGGEGQSLYTRDYLSDFTSLV--PGASSICGAGVWLLYEKPKYDGSGTGQSHVFLGSGD--CQDIP----FNATSIRQAGSPSVFDRPSLTLYAYTHFRSLELYITEDLPFLGVFSDQAYSAVVTGSLPWTVYTYDSYGGQGTCLSPNETVEVGGATVGVGLFPTYYELGS-SGLIRSVRRGC 204
BLAST of gamma-crystallin d vs. nr
Match: gi|1067068112|ref|XP_018024688.1| (PREDICTED: uncharacterized protein LOC108680386 [Hyalella azteca]) HSP 1 Score: 88.1965 bits (217), Expect = 2.251e-17 Identity = 57/179 (31.84%), Postives = 82/179 (45.81%), Query Frame = 0 Query: 71 DLTTFNFDNQASACCFYGVWILYENPGYNNDNYQAAVYTGWGEEYCSSFPTTFDNKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSA-IVNGCSPWTLYSEDNYKGNAICLHP------ADESNCYPGFFPKPIDLGILANVVSSVKRGCHAKAIFLPRLV 242 DL+ N DN + C G+WILY+N YN+ Y G + C P+ + SSLRFAG+P G N LY G F G E + F S+ I+ G WTL++ + G ++C P AD + G F DL + N + S+K+GCH+ + + V Sbjct: 56 DLSLVNMDNAIKSACQIGLWILYDNIEYNHYTSGTVCY-GLAVDTCFELPSLCSAQTSSLRFAGSPYGLNEPYFNLYEGKDFQGIEFRGNHTTSSVAFLDMDVSSLIITGVDGWTLFTGPEFTGGSVCAIPDILFQGADGTVINYGTFSTLSDLSLADNSIRSLKQGCHSDTVVSAKAV 233
BLAST of gamma-crystallin d vs. nr
Match: gi|1067100475|ref|XP_018012336.1| (PREDICTED: uncharacterized protein LOC108669499 [Hyalella azteca]) HSP 1 Score: 84.3445 bits (207), Expect = 1.486e-16 Identity = 53/167 (31.74%), Postives = 84/167 (50.30%), Query Frame = 0 Query: 77 FDNQASACCFYGVWILYENPGYNNDNYQAAVYTGWGEEYCSSFPTTFDNKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSA-IVNGCSPWTLYSEDNYKGNAICLH-----PADESNCYPGFFPKPIDLGILANVVSSVKRGCHAKAIF 237 DN + C G WILY+ P Y +++ + + Y +C + T+F N ASSLR+AG+P+G N + LY G +F GRE A + S+ +V G S WT Y+ +Y G +C++ D + ++ DLG+ N + SV RGC ++ + Sbjct: 1 MDNTIESACETGNWILYDTPNYGSNDTEFS-YRFTEVSWCGNIATSFRNMASSLRYAGSPNGLNDNYYNLYEGTHFRGREFRGNTNASDVGDLDMAVSSLVVTGQSSWTFYTGLHYTGANVCVYAFIHFTHDGIDLDTAYYINMDDLGLPDNSIRSVARGCLSERVL 166
BLAST of gamma-crystallin d vs. nr
Match: gi|1067066372|ref|XP_018017211.1| (PREDICTED: uncharacterized protein LOC108673845 [Hyalella azteca]) HSP 1 Score: 85.8853 bits (211), Expect = 2.242e-16 Identity = 60/175 (34.29%), Postives = 89/175 (50.86%), Query Frame = 0 Query: 69 VADLTTFNFDNQASACCFYGVWILYENPGYNNDNYQAAVYTGWGEEYCSSFPTTFDNKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSA-IVNGCSPWTLYSEDNYKGNAICLHPADESNCYPGFFPKPI------DLGILANVVSSVKRGCHAKAI 236 V DL+ D+ + C G+WILY++ Y++ N++ VY G C ++ T N SSLR+AG+P G N D LY G G E +A L S+ +V G S WT Y N+ G+A+C++ AD+ G I ++G+ N + SVKRGCHA+ + Sbjct: 53 VPDLSVVMMDDIIDSVCGTGLWILYDSINYDS-NHEVCVYEG--VNGCGTWDTFCWNVGSSLRYAGSPSGINNDYYNLYKGTTLRGEEFRGATDAADLGIFDLTISSLVVTGQSAWTFYEGLNFSGSAVCVY-ADQHISNNGTDLDFIHVLALSEIGLPNNSIRSVKRGCHAERV 223
BLAST of gamma-crystallin d vs. nr
Match: gi|1067102436|ref|XP_018013012.1| (PREDICTED: uncharacterized protein LOC108670071 isoform X1 [Hyalella azteca]) HSP 1 Score: 85.1149 bits (209), Expect = 2.593e-16 Identity = 58/177 (32.77%), Postives = 87/177 (49.15%), Query Frame = 0 Query: 67 KSVADLTTFNFDNQASACCFYGVWILYENPGYNNDNYQAAVYTGWGEEYCSSFPTTFDNKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSA-IVNGCSPWTLYSEDNYKGNAICLHPADESNCYPGF------FPKPIDLGILANVVSSVKRGCHAKAI 236 K DL+ DN + C G+W+LY+ Y D+ +AV YCS++ N SS+R+AG+P G N D LY G F G E ++A QL S+ IV G + WT Y+ ++ G +C++ ADE+N G +LG+ N + SV RGC ++ + Sbjct: 50 KYTPDLSAVQMDNTIESSCGTGLWLLYDATNYALDS--SAVCLWHAVNYCSNWAAYCQNMVSSVRYAGSPHGLNNDYYNLYEGTSFRGDEFRGDEDAAQLGDLDLAVSSLIVTGQAAWTFYTGLDFTGATVCVY-ADETNTNSGIDLDFARIENLSELGLPDNSIRSVARGCFSERV 223
BLAST of gamma-crystallin d vs. nr
Match: gi|1061477735|gb|ODM95434.1| (Gamma-crystallin-1, partial [Orchesella cincta]) HSP 1 Score: 85.1149 bits (209), Expect = 3.156e-16 Identity = 60/201 (29.85%), Postives = 93/201 (46.27%), Query Frame = 0 Query: 52 FDHADLSGEKLELDEKSVADLTTFNFDNQASACCFYGVWILYENPGYNNDNYQAAVYTGWGEEYCSSFPTT-----FD-----NKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSAIVNGCSPWTLYSEDNYKGNAICLHPADESNCYPGFFPKPIDLGILANVVSSVKRGCHAK---AIFLP 239 ++ D G +E+ V+DL T FDN+A + C G+W+LY P Y G+G Y + P+T FD SS+R++G D + LY Y++G E++ D+ P L+ A S I++G WT++ E NY G ++CL P +GI + SV++GC A + LP Sbjct: 32 YEQYDSQGLNIEV-TGYVSDLATRGFDNRARSACILGIWLLYSEPVY-----------GYGSMYYAYNPSTTNPYCFDLDSLAGLVSSVRYSGYYD-LTVETFNLYEYYYYMGAEEFTTDDIPSLSLAGRHASIIISGIGNWTVFEESNYNGPSLCLVPVTSITLIGDISEM---MGIRHGSLRSVRKGCDANPDVVVHLP 216
BLAST of gamma-crystallin d vs. nr
Match: gi|1067068637|ref|XP_018027748.1| (PREDICTED: uncharacterized protein LOC108682985 [Hyalella azteca]) HSP 1 Score: 83.5741 bits (205), Expect = 2.593e-15 Identity = 63/203 (31.03%), Postives = 93/203 (45.81%), Query Frame = 0 Query: 51 CFDHADLSGEKLELDEKSVADLTTF----------NFDNQASACCFYGVWILYENPGYNNDNYQAAVYTGWGEEYCSSFPTTFDNKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSA-IVNGCSPWTLYSEDNYKGNAICLHP---ADESNCYPGF--FPKPIDLGILANVVSSVKRGCHAKAIF 237 FD DL KL D K + F DN C+ GVW+LY + Y+ N + VY +G + C +F + SLR+AG+P N TLY GD F G+E +P L S+ +VNG SPWT ++ + G A+C++P + +N Y F +G+ N + SV +GC + I+ Sbjct: 23 SFDQPDLRYIKLYYDNKPDSPFKEFLDYSSNTSVQGVDNTIQRACYSGVWLLYNHYDYDY-NVERDVYYLYGLDRCFNFSSP--QSVLSLRYAGSPSAMNDVYFTLYEGDIFSGKEYKSNANSPSLGDLDMKVSSLVVNGQSPWTFFTGLQFTGEAVCVYPVVISGSNNIYLHHEEFQSMDHMGLPDNSIKSVAKGCLSSKIY 222
BLAST of gamma-crystallin d vs. nr
Match: gi|1067094351|ref|XP_018009063.1| (PREDICTED: uncharacterized protein LOC108666655 isoform X3 [Hyalella azteca]) HSP 1 Score: 82.0333 bits (201), Expect = 2.957e-15 Identity = 68/235 (28.94%), Postives = 111/235 (47.23%), Query Frame = 0 Query: 7 MRWIVSLCLVLSASSALAQDKPKYNPIGTLGLGRGSASNGQSIRCFDHADLSGEKLELDEKSVADLTTFNFDNQASACCFYGVWILYENPGYNNDNYQAAVYT-GWGEEYCSSFPTTFD-NKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSAIV-NGCSPWTLYSEDNYKGNAICLHPADESNCYPGFFPKPID--LGILANVVSSVKRGCHAKAI 236 +R + +L +S +ALA D P L SA++G D+A DL DN C GVW+LY+ Y + A++ G+G C+++ ++ +K SSLR+AG+P+G++ LY G F G E AP +++ S+++ +G SPWT ++ NY G A+C++P DE F + +G+ N + SV +GC + I Sbjct: 5 VRVLPALVAAISCFTALAIDVPSPR---NLNAYNNSAADGPYYEFLDYA--------------PDLRDQGMDNSIKVVCGTGVWLLYDGYYYGVEKEGPALFANGYG---CANYTNSYYYDKISSLRYAGSPNGFDNAYYNLYEGGGFTGNEFKGNKNAPDVSYLDMKVSSLITSGESPWTFFTGQNYTGEAVCVYPWDEYGVLT-FTAGSMSYYMGLADNSIRSVAKGCLSDNI 218 The following BLAST results are available for this feature:
BLAST of gamma-crystallin d vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 13
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BLAST of gamma-crystallin d vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of gamma-crystallin d vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold94_size379870:239958..242719- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold94_size379870-snap-gene-2.29 ID=maker-scaffold94_size379870-snap-gene-2.29|Name=gamma-crystallin d|organism=Tigriopus kingsejongensis|type=gene|length=2762bp|location=Sequence derived from alignment at scaffold94_size379870:239958..242719- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'gamma-crystallin d' has the following synonyms
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