gamma-crystallin a, maker-scaffold94_size379870-snap-gene-2.32 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of gamma-crystallin a vs. L. salmonis genes
Match: EMLSAG00000004908 (supercontig:LSalAtl2s:LSalAtl2s2584:8224:8901:-1 gene:EMLSAG00000004908 transcript:EMLSAT00000004908 description:"snap_masked-LSalAtl2s2584-processed-gene-0.1") HSP 1 Score: 118.242 bits (295), Expect = 3.981e-31 Identity = 56/131 (42.75%), Postives = 79/131 (60.31%), Query Frame = 0 Query: 333 WGESYCADFAADFDNKASSIRFSGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTAN-CYPSFFPDPSDLGFLSDQVSSTKKGCFSNNKIHGK 462 WG+++ + K SSIR SG D +T+NFYEG MG+EQ Y D+P+ NYD +S+I+TGC P+T+Y+ +N+ G C+YP+ T+ C P F PS G +DQVSS + GCFS + K Sbjct: 67 WGQNFKLSTMGGINGKVSSIRHSGVDD-LSANTLNFYEGPRSMGIEQNVYKDSPKLNYDKFDKSIIITGCKPFTLYEKENFGGKRICVYPNYTSTPCKPGFLEKPSAFGHFADQVSSVRLGCFSKSSFVAK 196 HSP 2 Score: 117.087 bits (292), Expect = 1.009e-30 Identity = 77/228 (33.77%), Postives = 111/228 (48.68%), Query Frame = 0 Query: 1 MKVFIALA-LVAISGALGSKPSMFPKSAKSGQENQYIDCYDFPGYEGIGFRVSDYETNLAESDFDNMASSCCFNGIWILYDLPDYNANNLEAVVFNGWGEGYCTDFPADFDNRASSIRFAGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTEN-CYPSFFPEPSDLGFLSDQVSSAKKGCFSNNKIHGK 226 MKV ++L LV IS LG+ Q I + +G VS E +L F+N A P + N + V + WG+ + + + SSIR +G D +T+NFYEG MG+EQ Y D+P+ NYD +S+I+TGC P+T+Y+ +N+ G C+YP+ T C P F +PS G +DQVSS + GCFS + K Sbjct: 1 MKVLLSLTILVGIS--LGA---------------QDIRLFSETNLQGTSKLVSRNEEDLQLIGFNNKAK-------------PAFVGNYNKMVTYV-WGQNFKLSTMGGINGKVSSIRHSGVDD-LSANTLNFYEGPRSMGIEQNVYKDSPKLNYDKFDKSIIITGCKPFTLYEKENFGGKRICVYPNYTSTPCKPGFLEKPSAFGHFADQVSSVRLGCFSKSSFVAK 196
BLAST of gamma-crystallin a vs. L. salmonis genes
Match: EMLSAG00000000780 (supercontig:LSalAtl2s:LSalAtl2s1127:109598:110255:-1 gene:EMLSAG00000000780 transcript:EMLSAT00000000780 description:"snap_masked-LSalAtl2s1127-processed-gene-0.4") HSP 1 Score: 63.5438 bits (153), Expect = 3.497e-12 Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 0 Query: 118 FAGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTENCYPSFFPEPSDLGFLSDQVSSAKKGCFSNNKIHGKTLNPEHGSSSSYVFIALAL 245 +AG+P Y+TI+ Y G FMG Q F D + F+ G G PW +Y Y+G +Y S E C P+F+ E D+G +VSS++ CFS G + P++ S+ +FIA L Sbjct: 43 YAGSPKNRTYNTISLYNGHGFMGNTQMF-DFSTGFS-AQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAV-PKN---STRIFIAKQL 164 HSP 2 Score: 56.225 bits (134), Expect = 1.131e-9 Identity = 34/103 (33.01%), Postives = 51/103 (49.51%), Query Frame = 0 Query: 354 FSGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTANCYPSFFPDPSDLGFLSDQVSSTKKGCFSN 456 ++G+P Y+TI+ Y G FMG Q F D + F+ G G PW +Y Y+G +Y S C P+F+ + D+G +VSS++ CFS Sbjct: 43 YAGSPKNRTYNTISLYNGHGFMGNTQMF-DFSTGFS-AQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSK 143
BLAST of gamma-crystallin a vs. L. salmonis genes
Match: EMLSAG00000005933 (supercontig:LSalAtl2s:LSalAtl2s320:21267:21614:-1 gene:EMLSAG00000005933 transcript:EMLSAT00000005933 description:"augustus_masked-LSalAtl2s320-processed-gene-0.0") HSP 1 Score: 60.8474 bits (146), Expect = 1.015e-11 Identity = 32/93 (34.41%), Postives = 47/93 (50.54%), Query Frame = 0 Query: 109 FDNRASSIRFAGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTENCYPSFFPEPS 201 +N S++R P ++TIN Y+G FM Q F A F +G+S+IV C PW +Y Y+G +Y S ENC P F+ + + Sbjct: 17 LENSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFYLKQT 108 HSP 2 Score: 58.5362 bits (140), Expect = 5.832e-11 Identity = 31/89 (34.83%), Postives = 44/89 (49.44%), Query Frame = 0 Query: 345 FDNKASSIRFSGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTANCYPSFF 433 +N S++R P ++TIN Y+G FM Q F A F +G+S+IV C PW +Y Y+G +Y S NC P F+ Sbjct: 17 LENSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104
BLAST of gamma-crystallin a vs. nr
Match: gi|1067106722|ref|XP_018013775.1| (PREDICTED: uncharacterized protein LOC108670793 [Hyalella azteca]) HSP 1 Score: 87.0409 bits (214), Expect = 5.486e-16 Identity = 63/193 (32.64%), Postives = 95/193 (49.22%), Query Frame = 0 Query: 35 YIDCYDFPGYEGIGFRVSDYETNLAESDFDNM---ASSCCFNGIWILYDLPDYNANNL-EAVVFNGWGEGYCTDFPADFDNRASSIRFAGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFN-YDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDT-----ENCYPSFFPEPSDLGFLSDQVSSAKKGC 217 + + Y G EG DY SDF ++ ASS C G+W+LY+ P Y+ + ++ VF G G+ C D P + A+SIR AG+P + ++ Y +F LE + +D P + + S +VTG PWT+Y YD+Y G CL P++T FP +LG S + S ++GC Sbjct: 24 WAEVYMEVGGEGQSLYTRDYL-----SDFTSLVPGASSICGAGVWLLYEKPKYDGSGTGQSHVFLGSGD--CQDIPFN----ATSIRQAGSPSVFDRPSLTLYAYTHFRSLELYITEDLPFLGVFSDQAYSAVVTGSLPWTVYTYDSYGGQGTCLSPNETVEVGGATVGVGLFPTYYELGS-SGLIRSVRRGC 204 HSP 2 Score: 84.7297 bits (208), Expect = 3.693e-15 Identity = 59/190 (31.05%), Postives = 92/190 (48.42%), Query Frame = 0 Query: 271 YMDCYDLKGQGGISFRVSDYETNLAQSSFDNMASSCCFNGIWILYDLPDYNANNL-EAAVFNGWGESYCADFAADFDNKASSIRFSGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFN-YDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDT-----ANCYPSFFPDPSDLGFLSDQVSSTKKGC 453 + + Y G G S DY ++ +S ASS C G+W+LY+ P Y+ + ++ VF G G+ D A+SIR +G+P + ++ Y +F LE + +D P + + S +VTG PWT+Y YD+Y G CL P++T A FP +LG S + S ++GC Sbjct: 24 WAEVYMEVGGEGQSLYTRDYLSDF--TSLVPGASSICGAGVWLLYEKPKYDGSGTGQSHVFLGSGD------CQDIPFNATSIRQAGSPSVFDRPSLTLYAYTHFRSLELYITEDLPFLGVFSDQAYSAVVTGSLPWTVYTYDSYGGQGTCLSPNETVEVGGATVGVGLFPTYYELGS-SGLIRSVRRGC 204
BLAST of gamma-crystallin a vs. nr
Match: gi|1067094347|ref|XP_018009061.1| (PREDICTED: uncharacterized protein LOC108666655 isoform X1 [Hyalella azteca]) HSP 1 Score: 87.4261 bits (215), Expect = 6.487e-16 Identity = 66/224 (29.46%), Postives = 107/224 (47.77%), Query Frame = 0 Query: 244 ALVAISGALASKPRMFPKSAKSGQLNQYMDCYDLKGQGGISFRVSDYETNLAQSSFDNMASSCCFNGIWILYDLPDYNANNLEAAVF-NGWGESYCADFAADFD-NKASSIRFSGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVT-GCSPWTIYQYDNYQGYSACLYPS--DTANCYPSFFPDPSD---LGFLSDQVSSTKKGCFSNNKI 459 +LV + AL + F A + ++ Y+ G + DY +L DN C G+W+LYD Y A+F NG+G CA++ + +K SS+R++G+P+G+ N YEG F G E +AP +Y ++ S ++T G SPWT + NY G + C+YP+ ++ ++ S +G + + S KGC S+N I Sbjct: 3 SLVRVLPALVAAISCFTALAIDVPSPRNLNAYNNSAADGPYYEFLDYAPDLRDQGMDNSIKVVCGTGVWLLYDGYYYGVEKEGPALFANGYG---CANYTNSYYYDKISSLRYAGSPNGFDNAYYNLYEGGGFTGNEFKGNKNAPDVSYLDMKVSSLITSGESPWTFFTGQNYTGEAKCVYPNVINSDGVTMHYYVAGSMQYYMGLADNSIRSVAKGCLSDNII 223 HSP 2 Score: 87.0409 bits (214), Expect = 7.008e-16 Identity = 65/224 (29.02%), Postives = 109/224 (48.66%), Query Frame = 0 Query: 8 ALVAISGALGSKPSMFPKSAKSGQENQYIDCYDFPGYEGIGFRVSDYETNLAESDFDNMASSCCFNGIWILYDLPDYNANNLEAVVF-NGWGEGYCTDFPADFD-NRASSIRFAGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVT-GCSPWTIYQYDNYQGYSACLYPS--DTENCYPSFFPEPSD---LGFLSDQVSSAKKGCFSNNKI 223 +LV + AL + S F A + ++ Y+ +G + DY +L + DN C G+W+LYD Y +F NG+G C ++ + ++ SS+R+AG+P+G+ N YEG F G E +AP +Y ++ S ++T G SPWT + NY G + C+YP+ +++ ++ S +G + + S KGC S+N I Sbjct: 3 SLVRVLPALVAAISCFTALAIDVPSPRNLNAYNNSAADGPYYEFLDYAPDLRDQGMDNSIKVVCGTGVWLLYDGYYYGVEKEGPALFANGYG---CANYTNSYYYDKISSLRYAGSPNGFDNAYYNLYEGGGFTGNEFKGNKNAPDVSYLDMKVSSLITSGESPWTFFTGQNYTGEAKCVYPNVINSDGVTMHYYVAGSMQYYMGLADNSIRSVAKGCLSDNII 223
BLAST of gamma-crystallin a vs. nr
Match: gi|1215271949|gb|OXA58260.1| (Absent in melanoma 1-like protein [Folsomia candida]) HSP 1 Score: 87.0409 bits (214), Expect = 7.013e-16 Identity = 53/148 (35.81%), Postives = 76/148 (51.35%), Query Frame = 0 Query: 274 CYDLKGQGGISFRV-SDYETNLAQSSFDNMASSCCFNGIWILYDLPDYNANNLEAAVFNGWGESYCADFAADFDNKASSIRFSGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACL 420 Y+ K Q G S V + Y +L+ FDN S C NG W+LY+ YN + + G SYC++ + KASS+RF G+ D+I FY F G E++F D N D + S+IVTG W +++ N+QG S C+ Sbjct: 31 VYEGKNQTGESVFVPTTYFPDLSVKKFDNRVQSVCVNGTWLLYEHSHYNTKEMGDMEYVS-GYSYCSNLKI-IEGKASSLRFVGSATDTASDSITFYSNIYFQGKEEYFTDSDASLNND-VRNSIIVTGSLGWRLFEKSNFQGESICI 175 HSP 2 Score: 83.1889 bits (204), Expect = 1.938e-14 Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 0 Query: 49 FRVSDYETNLAESDFDNMASSCCFNGIWILYDLPDYNANNLEAVVFNGWGEGYCTDFPADFDNRASSIRFAGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACL 184 F + Y +L+ FDN S C NG W+LY+ YN + + + G YC++ + +ASS+RF G+ D+I FY F G E++F D N D + S+IVTG W +++ N+QG S C+ Sbjct: 43 FVPTTYFPDLSVKKFDNRVQSVCVNGTWLLYEHSHYNTKEMGDMEYVS-GYSYCSNLKI-IEGKASSLRFVGSATDTASDSITFYSNIYFQGKEEYFTDSDASLNND-VRNSIIVTGSLGWRLFEKSNFQGESICI 175
BLAST of gamma-crystallin a vs. nr
Match: gi|1067066359|ref|XP_018017204.1| (PREDICTED: uncharacterized protein LOC108673837 [Hyalella azteca]) HSP 1 Score: 85.5001 bits (210), Expect = 2.165e-15 Identity = 62/205 (30.24%), Postives = 94/205 (45.85%), Query Frame = 0 Query: 270 QYMDCYDLKGQGGISFRVSDYETNLAQSSF-DNMASSCCFNGIWILYDLPDYNANNLEAAVFNGWGESYCADFAADFDNKASSIRFSGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQF-NYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTANCYPSFFPD------PSDLGFLSDQVSSTKKGCFSNNKIHGKTLYP 466 +Y+ Y G+S + ++Y +L + DN S C G W LYD +Y AN+ V + C D ++ N SS+R+SG+P G D N YEG N G+E DAP + D S++V+G S WT Y Y G S C+Y +DT D ++L + + S K+GC ++ + +P Sbjct: 8 RYLTTYADLSSTGVSNQFTEYAPDLGEVLLLDNTIESVCATGFWTLYDAINYGAND-TGDVCHFRAIKTCDDLSSSCRNVISSLRYSGSPYGINNDYYNLYEGINQRGMEFGGETDAPHLGDLDLEVSSLVVSGQSAWTFYTGQGYTGASVCVY-TDTHLSSSGIHLDYIQINELTELSLPDNSIRSVKRGCLADRVVGAPPPWP 210 HSP 2 Score: 81.6481 bits (200), Expect = 3.618e-14 Identity = 60/198 (30.30%), Postives = 90/198 (45.45%), Query Frame = 0 Query: 34 QYIDCYDFPGYEGIGFRVSDYETNLAESDF-DNMASSCCFNGIWILYDLPDYNANNLEAVVFNGWGEGYCTDFPADFDNRASSIRFAGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQF-NYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTENCYPSF------FPEPSDLGFLSDQVSSAKKGCFSNNKI 223 +Y+ Y G+ + ++Y +L E DN S C G W LYD +Y AN+ V + C D + N SS+R++G+P G D N YEG N G+E DAP + D S++V+G S WT Y Y G S C+Y +DT E ++L + + S K+GC ++ + Sbjct: 8 RYLTTYADLSSTGVSNQFTEYAPDLGEVLLLDNTIESVCATGFWTLYDAINYGAND-TGDVCHFRAIKTCDDLSSSCRNVISSLRYSGSPYGINNDYYNLYEGINQRGMEFGGETDAPHLGDLDLEVSSLVVSGQSAWTFYTGQGYTGASVCVY-TDTHLSSSGIHLDYIQINELTELSLPDNSIRSVKRGCLADRVV 203
BLAST of gamma-crystallin a vs. nr
Match: gi|1067066372|ref|XP_018017211.1| (PREDICTED: uncharacterized protein LOC108673845 [Hyalella azteca]) HSP 1 Score: 86.6557 bits (213), Expect = 2.204e-15 Identity = 64/222 (28.83%), Postives = 104/222 (46.85%), Query Frame = 0 Query: 18 SKPSMFPKSAKSGQENQYIDCYDFPGYEGIGFRVSDYETNLAESDFDNMASSCCFNGIWILYDLPDYNANNLEAVVFNGWGEGYCTDFPADFDNRASSIRFAGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFN-YDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSD--TENCYPSFFPEP---SDLGFLSDQVSSAKKGCFSNNKIHGKTLNPEHG 233 + S K + +Y+ Y P G+ + ++Y +L+ D++ S C G+WILYD +Y++N+ E V+ G C + N SS+R+AG+P G D N Y+G G E DA +D S++VTG S WT Y+ N+ G + C+Y + N F S++G ++ + S K+GC + ++ G LN G Sbjct: 16 ASSSPIEKEITRADDLRYLIGYSEPYSTGVSYTFTEYVPDLSVVMMDDIIDSVCGTGLWILYDSINYDSNH-EVCVYEGVNG--CGTWDTFCWNVGSSLRYAGSPSGINNDYYNLYKGTTLRGEEFRGATDAADLGIFDLTISSLVVTGQSAWTFYEGLNFSGSAVCVYADQHISNNGTDLDFIHVLALSEIGLPNNSIRSVKRGCHA-ERVVGAPLNGTRG 233 HSP 2 Score: 82.8037 bits (203), Expect = 4.355e-14 Identity = 59/215 (27.44%), Postives = 103/215 (47.91%), Query Frame = 0 Query: 251 ALASKPRMFPKSAKSGQLNQYMDCYDLKGQGGISFRVSDYETNLAQSSFDNMASSCCFNGIWILYDLPDYNANNLEAAVFNGWGESYCADFAADFDNKASSIRFSGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFN-YDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTANCYPS-----FFPDPSDLGFLSDQVSSTKKGCFSNNKI 459 LAS + + ++ L +Y+ Y G+S+ ++Y +L+ D++ S C G+WILYD +Y++N+ E V+ G + C + N SS+R++G+P G D N Y+G G E DA +D S++VTG S WT Y+ N+ G + C+Y + + S++G ++ + S K+GC + + Sbjct: 14 VLASSSPIEKEITRADDL-RYLIGYSEPYSTGVSYTFTEYVPDLSVVMMDDIIDSVCGTGLWILYDSINYDSNH-EVCVYE--GVNGCGTWDTFCWNVGSSLRYAGSPSGINNDYYNLYKGTTLRGEEFRGATDAADLGIFDLTISSLVVTGQSAWTFYEGLNFSGSAVCVYADQHISNNGTDLDFIHVLALSEIGLPNNSIRSVKRGCHAERVV 224 The following BLAST results are available for this feature:
BLAST of gamma-crystallin a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 13
Pagesback to top
BLAST of gamma-crystallin a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of gamma-crystallin a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold94_size379870:255707..263273- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold94_size379870-snap-gene-2.32 ID=maker-scaffold94_size379870-snap-gene-2.32|Name=gamma-crystallin a|organism=Tigriopus kingsejongensis|type=gene|length=7567bp|location=Sequence derived from alignment at scaffold94_size379870:255707..263273- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'gamma-crystallin a' has the following synonyms
Add to Basket
|