vin3-like protein 2-like, maker-scaffold974_size74728-snap-gene-0.17 (gene) Tigriopus kingsejongensis

Overview
Namevin3-like protein 2-like
Unique Namemaker-scaffold974_size74728-snap-gene-0.17
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of vin3-like protein 2-like vs. L. salmonis genes
Match: EMLSAG00000005166 (supercontig:LSalAtl2s:LSalAtl2s272:98980:103362:-1 gene:EMLSAG00000005166 transcript:EMLSAT00000005166 description:"maker-LSalAtl2s272-augustus-gene-1.14")

HSP 1 Score: 69.707 bits (169), Expect = 1.772e-15
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:   42 VSLDCGATSAENCTYLTQ---TSTSAFTASPCTYKICKSDPEVCRIRFEFNTFQIGDQ---TVGTAMAGTAISTNG 111
            ++L CG TS++NCTY+ Q   TSTS+  ++PCTY ICK+   +CRIR +F TF I +     VG   AGT I+  G
Sbjct:  394 ITLSCGGTSSDNCTYIEQSSFTSTSSLNSNPCTYTICKNSNMICRIRLDFTTFTIANPFTTPVGADAAGTTITNAG 469
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BLAST of vin3-like protein 2-like vs. L. salmonis genes
Match: EMLSAG00000002684 (supercontig:LSalAtl2s:LSalAtl2s154:733041:736982:-1 gene:EMLSAG00000002684 transcript:EMLSAT00000002684 description:"maker-LSalAtl2s154-snap-gene-7.18")

HSP 1 Score: 56.9954 bits (136), Expect = 4.031e-11
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 0 
Query:   42 VSLDCGATSAENCTYLTQTSTSAFTASPCTYKICKSDPEVCRIRFEFNTFQIGDQTVGTAMAGTAI 107
            V+L CG TS+ENCTYL++ S S    S C++ IC     +CRIRF+F  F+I D        G +I
Sbjct:   91 VTLTCGGTSSENCTYLSKGSDST---SDCSFTICPKHSNICRIRFDFIVFRISDPVSSITNVGGSI 153
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BLAST of vin3-like protein 2-like vs. L. salmonis genes
Match: EMLSAG00000004323 (supercontig:LSalAtl2s:LSalAtl2s227:164788:172918:-1 gene:EMLSAG00000004323 transcript:EMLSAT00000004323 description:"maker-LSalAtl2s227-augustus-gene-1.21")

HSP 1 Score: 55.0694 bits (131), Expect = 1.706e-10
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 0 
Query:   44 LDCGATSAENCTYLTQTSTSA---FTASPCTYKICKSDPEVCRIRFEFNTFQIGDQTVGT 100
            + CG+ S+ NCTY+ QTS S+    + +PCTY++C+++ +VCR+R +F T  +    +GT
Sbjct:   86 IQCGSMSSANCTYIEQTSISSAGSLSQNPCTYRLCRNNDDVCRLRLDFVTNILAQPFMGT 145
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BLAST of vin3-like protein 2-like vs. L. salmonis genes
Match: EMLSAG00000009733 (supercontig:LSalAtl2s:LSalAtl2s627:64350:67809:1 gene:EMLSAG00000009733 transcript:EMLSAT00000009733 description:"snap_masked-LSalAtl2s627-processed-gene-0.30")

HSP 1 Score: 54.6842 bits (130), Expect = 2.646e-10
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 0 
Query:   43 SLDCGATSAENCTYLTQTSTSAFTASPCTYKICKSDPEVCRIRFEFNTFQIG 94
            SL+CG  ++ENCTYL   + S      CTY ICK    VCRIR +F  F+IG
Sbjct:  112 SLNCGGMNSENCTYLVNNNPSP---GACTYTICKKSNWVCRIRLDFADFRIG 160
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BLAST of vin3-like protein 2-like vs. L. salmonis genes
Match: EMLSAG00000002101 (supercontig:LSalAtl2s:LSalAtl2s1395:30727:32553:-1 gene:EMLSAG00000002101 transcript:EMLSAT00000002101 description:"maker-LSalAtl2s1395-augustus-gene-0.19")

HSP 1 Score: 53.5286 bits (127), Expect = 7.660e-10
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0 
Query:   45 DCGATSAENCTYLTQTSTSAFTASPCTYKICKSDPEVCRIRFEFNTFQIGDQTVGTAMAGTAI 107
            +C + S+EN TYLT  + SA    PC+Y+ICK++  VCR+RF+F  F +    +  A  G++I
Sbjct:   92 ECXSQSSENLTYLTNNNPSA---GPCSYRICKNNDWVCRLRFDFIDFTMAQPVLTRAGEGSSI 151
[Close]
BLAST of vin3-like protein 2-like vs. L. salmonis genes
Match: EMLSAG00000000066 (supercontig:LSalAtl2s:LSalAtl2s100:472529:474152:-1 gene:EMLSAG00000000066 transcript:EMLSAT00000000066 description:"maker-LSalAtl2s100-augustus-gene-4.21")

HSP 1 Score: 53.1434 bits (126), Expect = 8.995e-10
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0 
Query:   42 VSLDCGATSAENCTYLTQTSTSAFTASPCT---YKICKSDPEVCRIRFEFNTFQIGDQTVGTAMAG 104
            ++L CG TS+ENCTY+ Q+S ++ ++       YKICK    VCRIR +F    + D   GTA+ G
Sbjct:   82 ITLGCGGTSSENCTYIEQSSFTSSSSLSSNPCSYKICKLSDHVCRIRLDFTKHVLADPVSGTAVVG 147
[Close]
BLAST of vin3-like protein 2-like vs. L. salmonis genes
Match: EMLSAG00000004321 (supercontig:LSalAtl2s:LSalAtl2s227:153019:155658:-1 gene:EMLSAG00000004321 transcript:EMLSAT00000004321 description:"maker-LSalAtl2s227-snap-gene-1.26")

HSP 1 Score: 48.1358 bits (113), Expect = 5.711e-8
Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 0 
Query:   50 SAENCTYLTQTSTSAFTA---SPCTYKICKSDPEVCRIRFEFNTFQIGDQTVGTAMAGTAISTNG 111
            S  NCTYL QTS ++ T+   +PCTY ICK   E CR+R  F T  +    +GT  A  A +  G
Sbjct:    2 SNANCTYLEQTSITSATSLSMNPCTYTICKCSSEACRLRLXFTTNILALPVIGTXXATAAENLGG 66
The following BLAST results are available for this feature:
BLAST of vin3-like protein 2-like vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 7
Match NameE-valueIdentityDescription
EMLSAG000000051661.772e-1547.37supercontig:LSalAtl2s:LSalAtl2s272:98980:103362:-1... [more]
EMLSAG000000026844.031e-1143.94supercontig:LSalAtl2s:LSalAtl2s154:733041:736982:-... [more]
EMLSAG000000043231.706e-1040.00supercontig:LSalAtl2s:LSalAtl2s227:164788:172918:-... [more]
EMLSAG000000097332.646e-1050.00supercontig:LSalAtl2s:LSalAtl2s627:64350:67809:1 g... [more]
EMLSAG000000021017.660e-1041.27supercontig:LSalAtl2s:LSalAtl2s1395:30727:32553:-1... [more]
EMLSAG000000000668.995e-1042.42supercontig:LSalAtl2s:LSalAtl2s100:472529:474152:-... [more]
EMLSAG000000043215.711e-843.08supercontig:LSalAtl2s:LSalAtl2s227:153019:155658:-... [more]
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BLAST of vin3-like protein 2-like vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of vin3-like protein 2-like vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold974_size74728supercontigscaffold974_size74728:31875..34792 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold974_size74728-snap-gene-0.17-mRNA-1maker-scaffold974_size74728-snap-gene-0.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold974_size74728:31875..34792+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold974_size74728-snap-gene-0.17 ID=maker-scaffold974_size74728-snap-gene-0.17|Name=vin3-like protein 2-like|organism=Tigriopus kingsejongensis|type=gene|length=2918bp|location=Sequence derived from alignment at scaffold974_size74728:31875..34792+ (Tigriopus kingsejongensis)
GAAAGCTTTACTGGTAATTATTGGTTCTGCCCGCTTTGGCTTGGTTGGGT
GCCTGAAATTCATTGTTCAGGCCCCCTTTTCAATTTCACGTGTTTATCTT
TTCTCTTTTAGGTCACAATCATGGCTCAAGTATTGGAAGGGACCACGCTT
TATTTCATTTTAGGGTTGGTGCTATGCACTTTGGTTAATTGCCAAAACAA
TCGCACTGTGGGGTCGGACAGAGATGCCAAGGGTATGAAACTTTCATTCT
TTAAGTTGTTTGGGTGAATTTATCGTTTCGTGTCGTTTCAGTAACACGGA
AAAACTCATCTCTCATTTATCAGCTACTACTAGACATTATGGGCATTAAA
AGTATGCTTGCTCTGATAAGCAGGTTCATTTCAAGTGGACTTGCTCACAA
CTATACGTAGGTATTGTTTTTCTCTCAACTGTCTATCAGAGAGAAAAAGA
TCCATGGGAAAACAAAGACACTTTGTTTTGCCTTAAAATATTTTCTTTCA
GCCAACTGGATACAATGAGGTGCGTTTGGGCGAATATGCATTGTCCGAAA
CAGACAATGAATTGTCAAACGAATCCATTTTCAGTTCAGAACAGAGGGAA
AACACTTCCATTTGATGCTTTATTTAAGAAATAGCCGGAAAAGTGTCCCT
TTGCCAGGTTATTCCTATCCACAGAATCAAAATCTCTCATTTTTCGCCTG
CCGCAATGCTCCACTTTCTTTTGACCGTTTTTTCATCTCTAGTCACAGAT
ATTATTTCAGCTCTCTCTCTGCTCGTAGTAAAAAAACTCTGAATTATTTC
ATCTAGAGCACCAAATAATAATAAATCGGAACATCTGATAAGCAAACCTA
CTCCACGTATAGGAATTTTAAAAAGTCAGATCCTTTGTTTCAAGATTTCT
GAACCACCAAGATTCTTGGATGTGCCACAATGGAAAATTTTCGCGTCGAT
AAAAGCATAAACCGCTTGCAACTCTTTGGGATTCATCCTTAAAAAATAAA
CATTTGATGGTTAGACTCTTGAAAGCGGGCACCAAATGTGCCCAAATGAT
TCGTGAAATAGGAAAAATGAAAAACAACAACTCCATAACATCCAATGATT
TCGTCTAAGCCTTAGCTTGTTCCCATAGTAGTAGGTATCTAAACCAGTCA
TTTTCCTTGCAGTGTTTTCGCTTTTTCAACTCGTGAAATTCAAGGCAAGT
GTCTGACCTTTTTCTTAATACTTGCAGGCAATTGATTGTTTTCTTCTTTT
TAGAACGAACCGTGTGTGGGATCGACTTCTAAGAATGGAACCTGTTACAC
ACGTACAGTCAAACACTGATTGTAATATTTATTCCATTGTCTGAACGCCC
CTGGTCCATCTTATTTTGCAGAAGACGAATGCAAGGCGAAAAGTGGAAGT
GCTTCCGGATCCTGTGCTTCTGGTTATGGAGTGTGTTGTACTTGTAAGTA
AACTGAAAAGTGAACTCAGAACACTAAGCTGAGTTGTGGAATTTACCTGG
GCGTGTGAAAGGATAGCACTCTATGGTATACATCTGCTGAGGGCTTGAGA
AAAAAGACAAAACACCATCAACTTCTTCACCAAATTTGTGGTCTTCCGTT
AAAAAACTGAAAACACTGTTTTCGACCAAAATTTCACTCCACTTGGCCAT
TTGAGAAACTTTCATTTGAATGGTTTTTTAACAGTTCACAATATTTAGGG
ATAGTTTTAAGATCACTTAAAAAAGATTTCGCCTCACTTAAGGTTGTGTT
TCTGTCATCAGCCGATTTTATTTGTAAAACTATACCACTTTGCAATAGAT
TGGTTTGGTTCAGTAGAGCCTATTGAACCAAATCAATTTTTTGAAAAGTG
GTATAGTTTTAAACCTAATTTTAAAATATTTGTTGTTACTAAATATTCTA
AGGGTATTCTTTGTTTCAACTATTTTTTGAAGGCAGATGATCCGTTTCGT
TCAGTCTGAAAAGGTGAATTTTGGGCTGCTTTCCAGCACTTCAAACCTAA
TTTGTGGCATTTTTATTTCGCCAAAAACACAAATTTACTTTTTGGATTAC
GATTTTGTTCACTTATTGTATGGTTGATGATTAACCTAAAATGTTGAACC
ACTTCTCTTTTTCAAAATGTCTAGTTTATAAAAAAAGGGGGTGCAAACAC
CATATTGTCAGGATATCCCGATTGTTTTTGACCTTTTTTTTTTTAACTGC
GGGTCGAAAAAAACAATTTCGAAAAAACCTTCCTGGCTACGAATGCGTTT
TAAAAGTTGTCCACAATTCAAGGATTGGAATTAGAATTGATCCAGACCCA
TTGATTGATTGCTTTTGGCTCCAAATATGATTGCTGCAAAAGTGTACATT
TGTTTTAAAATTTGATTTAAAAAACGACCAAATTTCCGAGTTGGCAAGAA
GATAAACTTTTTTTCTGGCATTGGTGCATTTGATCCACTTTTGCTTTATT
TTTTGCCACCTGAAATTGACAATGTAGATCAAAAAAATTGTTGTCATTGA
TCTGGAAAGATTTTGAAGAGCAAGAGTATAATTGCAATTGGATGAACCAA
ACAAGTATGTGTCTGCGCCATGTATCTTGATCAAAAACCTTTTTTGAACC
ACTATAAGCTATGTTTCGACGACAATTTAACCCTGTCCATTTCAGTCTCA
CTAGACTGTGGTGCCACCTCTGCGGAAAATTGTACCTATCTCACGCAAAC
CTCCACTTCCGCCTTCACCGCCAGTCCTTGTACCTACAAAATATGCAAGT
CTGATCCAGAAGTGTGCCGAATCCGCTTCGAATTCAACGTGAGTTTAGTT
AGAAACCTGTTTGAAAGGAGTATTTTCAACGTCAACTTGTTTTGTCTTCC
AGACTTTCCAGATTGGAGACCAAACTGTTGGCACTGCCATGGCTGGAACT
GCAATCTCCACTAATGGT
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Synonyms
The feature 'vin3-like protein 2-like' has the following synonyms
Synonym
Tk09216
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