choline dehydrogenase, snap_masked-scaffold1244_size53516-processed-gene-0.7 (gene) Tigriopus kingsejongensis

Overview


Name	choline dehydrogenase
Unique Name	snap_masked-scaffold1244_size53516-processed-gene-0.7
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of choline dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000012767 (supercontig:LSalAtl2s:LSalAtl2s96:160426:167507:-1 gene:EMLSAG00000012767 transcript:EMLSAT00000012767 description:"maker-LSalAtl2s96-snap-gene-1.14")

HSP 1 Score: 82.4185 bits (202), Expect = 1.918e-19
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0

Query:   59 PDPGL---PMDDDTKTLDWARNNTASIYHPTGTCKMG--QGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLI 142
            P PG    P+  D+      R  T +IYH +GT KMG      SVV+  L+V+G+ GLRV D SI+P+I SGNTNAP IMIGE+ +DLI
Sbjct:  523 PMPGCENSPLWTDSYWAXIXRQYTTTIYHYSGTAKMGPPHDPSSVVNHELKVYGVKGLRVIDXSIIPKIPSGNTNAPVIMIGERGADLI 611

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BLAST of choline dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000000122 (supercontig:LSalAtl2s:LSalAtl2s101:523216:528117:1 gene:EMLSAG00000000122 transcript:EMLSAT00000000122 description:"maker-LSalAtl2s101-snap-gene-5.35")

HSP 1 Score: 78.9518 bits (193), Expect = 3.097e-18
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 0

Query:   61 PGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTG--SVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILED 145
            PG  +  D     + R+   S YHP+ TCKMG  +   +VVD   RV G+ GLRV D SIMP I SGN NAP IMI E+A+D+I  D
Sbjct:  698 PGHELTSDKDIDAFIRDKADSAYHPSCTCKMGSTSDNMTVVDPCTRVVGLEGLRVVDASIMPSIASGNLNAPTIMIAERAADIIKGD 784

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BLAST of choline dehydrogenase vs. SwissProt
Match: gi|123048421|sp|Q0T7N0.1|BETA_SHIF8 (RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH)

HSP 1 Score: 98.2117 bits (243), Expect = 1.560e-23
Identity = 62/189 (32.80%), Postives = 86/189 (45.50%), Query Frame = 0

Query:    6 ATGFIKTRPTLETPDIQFHVQPL--------------------SAENPGKG--------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLI 142
            A GFI++R     P+IQ+H  P+                    S  +P +G                                + I R+I  H P  D+  +     PG+    D +  ++ RN+  + +HP GTCKMG    SVVD   RVHG+ GLRV D SIMP+I++GN NA  IMIGEK +D+I
Sbjct:  345 AGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIM-HQPALDQ-YRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMI 531

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BLAST of choline dehydrogenase vs. SwissProt
Match: gi|114919|sp|P17444.1|BETA_ECOLI (RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH >gi|189081406|sp|B1J0W6.1|BETA_ECOLC RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH >gi|226698885|sp|B1XE52.1|BETA_ECODH RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH)

HSP 1 Score: 98.2117 bits (243), Expect = 1.687e-23
Identity = 62/189 (32.80%), Postives = 86/189 (45.50%), Query Frame = 0

Query:    6 ATGFIKTRPTLETPDIQFHVQPL--------------------SAENPGKG--------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLI 142
            A GFI++R     P+IQ+H  P+                    S  +P +G                                + I R+I  H P  D+  +     PG+    D +  ++ RN+  + +HP GTCKMG    SVVD   RVHG+ GLRV D SIMP+I++GN NA  IMIGEK +D+I
Sbjct:  345 AGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIM-HQPALDQ-YRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMI 531

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BLAST of choline dehydrogenase vs. SwissProt
Match: gi|54040065|sp|P64264.1|Y1310_MYCBO (RecName: Full=Uncharacterized GMC-type oxidoreductase Mb1310 >gi|618798202|sp|P9WMV4.1|Y1279_MYCTO RecName: Full=Uncharacterized GMC-type oxidoreductase MT1316 >gi|618798203|sp|P9WMV5.1|Y1279_MYCTU RecName: Full=Uncharacterized GMC-type oxidoreductase Rv1279)

HSP 1 Score: 97.8265 bits (242), Expect = 1.789e-23
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 0

Query:   36 GVNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLI 142
            G+ I  +IA+  PL D +    RP     +D+ T  L  A   + ++YHP GTC+MG    SVVD +LRV G+ GLRVAD S+MP  V G+T+AP+++IGEKA+DLI
Sbjct:  421 GLRICARIAQARPLRDLLGSIARPRNSTELDEATLELALA-TCSHTLYHPMGTCRMGSDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLI 526

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BLAST of choline dehydrogenase vs. SwissProt
Match: gi|118574768|sp|Q1RFM3.2|BETA_ECOUT (RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH >gi|226698882|sp|B7MCD0.1|BETA_ECO45 RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH)

HSP 1 Score: 97.4413 bits (241), Expect = 2.670e-23
Identity = 61/189 (32.28%), Postives = 86/189 (45.50%), Query Frame = 0

Query:    6 ATGFIKTRPTLETPDIQFHVQPL--------------------SAENPGKG--------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLI 142
            A GFI++R     P+IQ+H  P+                    S  +P +G                                + I R+I  H P  D+  +     PG+    D +  ++ RN+  + +HP GTCKMG    +VVD   RVHG+ GLRV D SIMP+I++GN NA  IMIGEK +D+I
Sbjct:  345 AGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIM-HQPALDQ-YRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMAVVDAEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADMI 531

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BLAST of choline dehydrogenase vs. SwissProt
Match: gi|226698888|sp|B1LIJ7.1|BETA_ECOSM (RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH)

HSP 1 Score: 97.4413 bits (241), Expect = 3.278e-23
Identity = 64/187 (34.22%), Postives = 88/187 (47.06%), Query Frame = 0

Query:    6 ATGFIKTRPTLETPDIQFHVQPL--------------------SAENPGKG-VNIARQIARHTPL-----------------ADKILKE--HRP----------DPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLI 142
            A GFI++R     P+IQ+H  P+                    S  +P +G V I  +     P                  A +I +E  H+P           PG+    D +  ++ RN+  + +HP GTCKMG    SVVD   RVHG+ GLRV D SIMP+I++GN NA  IMIGEK +D+I
Sbjct:  345 AGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRAPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYHGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADMI 531

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BLAST of choline dehydrogenase vs. SwissProt
Match: gi|42558874|sp|Q8X6C6.1|BETA_ECO57 (RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH >gi|226698883|sp|B5Z1R0.1|BETA_ECO5E RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH)

HSP 1 Score: 97.0561 bits (240), Expect = 3.476e-23
Identity = 62/189 (32.80%), Postives = 85/189 (44.97%), Query Frame = 0

Query:    6 ATGFIKTRPTLETPDIQFHVQPL--------------------SAENPGKG--------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLI 142
            A GFI++R     P+IQ+H  P+                    S  +P +G                                + I R+I  H P  D+  +     PG     D +  ++ RN+  + +HP GTCKMG    SVVD   RVHG+ GLRV D SIMP+I++GN NA  IMIGEK +D+I
Sbjct:  345 AGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIM-HQPALDQ-YRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADMI 531

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BLAST of choline dehydrogenase vs. SwissProt
Match: gi|166991271|sp|A7ZI50.1|BETA_ECO24 (RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH >gi|166991272|sp|A7ZWV4.1|BETA_ECOHS RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH >gi|226698884|sp|B7M2V5.1|BETA_ECO8A RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH >gi|226698887|sp|B6I074.1|BETA_ECOSE RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH >gi|254810403|sp|B7L439.1|BETA_ECO55 RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH)

HSP 1 Score: 97.0561 bits (240), Expect = 3.616e-23
Identity = 62/189 (32.80%), Postives = 85/189 (44.97%), Query Frame = 0

Query:    6 ATGFIKTRPTLETPDIQFHVQPL--------------------SAENPGKG--------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLI 142
            A GFI++R     P+IQ+H  P+                    S  +P +G                                + I R+I  H P  D+  +     PG     D +  ++ RN+  + +HP GTCKMG    SVVD   RVHG+ GLRV D SIMP+I++GN NA  IMIGEK +D+I
Sbjct:  345 AGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIM-HQPALDQ-YRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMI 531

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BLAST of choline dehydrogenase vs. SwissProt
Match: gi|118574767|sp|Q0TKW1.2|BETA_ECOL5 (RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH)

HSP 1 Score: 97.0561 bits (240), Expect = 4.146e-23
Identity = 56/136 (41.18%), Postives = 78/136 (57.35%), Query Frame = 0

Query:   10 IKTRPTLETPDIQFHVQPLSAENPGKGVNIARQIAR---HTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLI 142
            IK+R   + P I F+   +S E   +    A +I R   H P  D+  +     PG+    D +  ++ RN+  + +HP GTCKMG    +VVD   RVHG+ GLRV D SIMP+I++GN NA  IMIGEK +D+I
Sbjct:  399 IKSRDPHQHPGILFNY--MSHEQDWQEFRDAIRITREIMHQPALDQ-YRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMI 531

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BLAST of choline dehydrogenase vs. SwissProt
Match: gi|42558866|sp|Q8FKI9.2|BETA_ECOL6 (RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH)

HSP 1 Score: 97.0561 bits (240), Expect = 4.527e-23
Identity = 56/136 (41.18%), Postives = 78/136 (57.35%), Query Frame = 0

Query:   10 IKTRPTLETPDIQFHVQPLSAENPGKGVNIARQIAR---HTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLI 142
            IK+R   + P I F+   +S E   +    A +I R   H P  D+  +     PG+    D +  ++ RN+  + +HP GTCKMG    +VVD   RVHG+ GLRV D SIMP+I++GN NA  IMIGEK +D+I
Sbjct:  399 IKSRDPHQHPGILFNY--MSHEQDWQEFRDAIRITREIMHQPALDQ-YRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMI 531

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BLAST of choline dehydrogenase vs. SwissProt
Match: gi|81695907|sp|Q6FDF9.1|BETA_ACIAD (RecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; AltName: Full=Betaine aldehyde dehydrogenase; Short=BADH)

HSP 1 Score: 96.6709 bits (239), Expect = 4.639e-23
Identity = 56/138 (40.58%), Postives = 78/138 (56.52%), Query Frame = 0

Query:   10 IKTRPTLETPDIQFHVQPLSAENPGKGVNIARQIAR---HTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILE 144
            +K++   E P I F+   +S E   +    A +I R   H P  D    E    PG  +  DT+  D+ RN+  + YHP+ +CKMG+   +VVD + RVHG+ GLRV D SIMP I++GN NA  IM+ EK +D I E
Sbjct:  403 LKSKDPFEHPSILFNY--MSTEQDWQEFRAAIRITREIMHQPALDPYRGE-EISPGKQLSTDTQLDDFVRNHAETAYHPSCSCKMGEDDMAVVDHQGRVHGLQGLRVVDASIMPLIITGNLNATTIMMAEKIADQIRE 537

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BLAST of choline dehydrogenase vs. nr
Match: gi|1133994461|emb|SIT91440.1| (choline dehydrogenase [Loktanella rosea])

HSP 1 Score: 234.958 bits (598), Expect = 1.885e-72
Identity = 125/198 (63.13%), Postives = 131/198 (66.16%), Query Frame = 0

Query:    1 MAASLATGFIKTRPTLETPDIQFHVQPLSAENPGKG----------------------------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDS 146
            MAASLATGF+KTR  +ETPDIQFHVQPLSAENPGKG                                                    VNIAR+IARH PL  KI  E RP+P LPMDD   TLDWARNNTASIYHPTGTCKMGQG  SVVD RLRVHGI+GLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILED+
Sbjct:  334 MAASLATGFLKTREDVETPDIQFHVQPLSAENPGKGADKFSAFTMSVCQLRPESKGEIRLQSSDPRTYPKIIPNYLSTETDCRTVVAGVNIARKIARHAPLTSKISAEFRPNPSLPMDDYDATLDWARNNTASIYHPTGTCKMGQGKESVVDARLRVHGIAGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDA 531

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BLAST of choline dehydrogenase vs. nr
Match: gi|1140802160|ref|WP_076661018.1| (choline dehydrogenase [Loktanella rosea])

HSP 1 Score: 234.958 bits (598), Expect = 2.233e-72
Identity = 125/198 (63.13%), Postives = 131/198 (66.16%), Query Frame = 0

Query:    1 MAASLATGFIKTRPTLETPDIQFHVQPLSAENPGKG----------------------------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDS 146
            MAASLATGF+KTR  +ETPDIQFHVQPLSAENPGKG                                                    VNIAR+IARH PL  KI  E RP+P LPMDD   TLDWARNNTASIYHPTGTCKMGQG  SVVD RLRVHGI+GLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILED+
Sbjct:  339 MAASLATGFLKTREDVETPDIQFHVQPLSAENPGKGADKFSAFTMSVCQLRPESKGEIRLQSSDPRTYPKIIPNYLSTETDCRTVVAGVNIARKIARHAPLTSKISAEFRPNPSLPMDDYDATLDWARNNTASIYHPTGTCKMGQGKESVVDARLRVHGIAGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDA 536

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BLAST of choline dehydrogenase vs. nr
Match: gi|944381534|ref|WP_055687391.1| (choline dehydrogenase [Loktanella sp. 5RATIMAR09] >gi|943688807|gb|KQI71120.1| choline dehydrogenase [Loktanella sp. 5RATIMAR09])

HSP 1 Score: 234.572 bits (597), Expect = 3.985e-72
Identity = 124/198 (62.63%), Postives = 132/198 (66.67%), Query Frame = 0

Query:    1 MAASLATGFIKTRPTLETPDIQFHVQPLSAENPGKG----------------------------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDS 146
            MAASLATGF+KTR  +ETPDIQFHVQPLSAENPGKG                                                    VNIAR+IARH PL  KI +E+RP   LPMDD   TLDWARNNTASIYHPTGTCKMGQG  +VVDERLRVHGI+GLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILED+
Sbjct:  339 MAASLATGFLKTREDMETPDIQFHVQPLSAENPGKGADKFSAFTMSVCQLRPESKGEIRLQSSDPKTYPRIIPNYLSTETDCRTVVAGVNIARKIARHAPLTSKISQEYRPHADLPMDDYDATLDWARNNTASIYHPTGTCKMGQGKEAVVDERLRVHGIAGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDA 536

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BLAST of choline dehydrogenase vs. nr
Match: gi|942094247|ref|WP_055296158.1| (choline dehydrogenase [Loktanella sp. 1ANDIMAR09] >gi|941330222|gb|KQB95894.1| choline dehydrogenase [Loktanella sp. 1ANDIMAR09])

HSP 1 Score: 233.802 bits (595), Expect = 5.924e-72
Identity = 124/198 (62.63%), Postives = 131/198 (66.16%), Query Frame = 0

Query:    1 MAASLATGFIKTRPTLETPDIQFHVQPLSAENPGKG----------------------------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDS 146
            MAASLATGF+KTR  +ETPDIQFHVQPLSAENPGKG                                                    VNIAR+IARH PL  KI  E RP+P LPMDD   TLDWARNNTASIYHPTGTCKMGQG  +VVD RLRVHGI+GLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILED+
Sbjct:  339 MAASLATGFLKTREDVETPDIQFHVQPLSAENPGKGADKFSAFTMSVCQLRPESKGEIRLQSSDPRTYPKIIPNYLSTETDCRTVVAGVNIARKIARHAPLTSKISAEFRPNPSLPMDDYDATLDWARNNTASIYHPTGTCKMGQGKEAVVDARLRVHGIAGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDA 536

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BLAST of choline dehydrogenase vs. nr
Match: gi|495506420|ref|WP_008231067.1| (choline dehydrogenase [Roseobacter sp. CCS2] >gi|126716516|gb|EBA13380.1| glucose-methanol-choline oxidoreductase [Roseobacter sp. CCS2])

HSP 1 Score: 233.417 bits (594), Expect = 1.139e-71
Identity = 124/198 (62.63%), Postives = 130/198 (65.66%), Query Frame = 0

Query:    1 MAASLATGFIKTRPTLETPDIQFHVQPLSAENPGKG----------------------------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDS 146
            MAASLATGF+KTR  +ETPDIQFHVQPLSAENPGKG                                                    VNIAR+IARH PL  KI +E RP   LPMDD   TLDWARNNTASIYHPTGTCKMGQG  +VVDERLRVHGI GLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILED+
Sbjct:  339 MAASLATGFLKTREDVETPDIQFHVQPLSAENPGKGADKFSAFTMSVCQLRPESKGEIRLQGHDPKAYPKIIPNYLSTETDCRTVVAGVNIARKIARHAPLTSKISEEFRPHASLPMDDYDATLDWARNNTASIYHPTGTCKMGQGKEAVVDERLRVHGIDGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDA 536

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BLAST of choline dehydrogenase vs. nr
Match: gi|1221907711|ref|WP_089992147.1| (choline dehydrogenase [Loktanella koreensis] >gi|1094442072|emb|SEW18467.1| choline dehydrogenase [Loktanella koreensis])

HSP 1 Score: 231.491 bits (589), Expect = 4.991e-71
Identity = 120/198 (60.61%), Postives = 134/198 (67.68%), Query Frame = 0

Query:    1 MAASLATGFIKTRPTLETPDIQFHVQPLSAENPGKG----------------------------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDS 146
            MAASLATGF+KTRP +ETPDIQFHVQPLSAENPGKG                                                    + IAR+IAR+ PL  KI +E+RP+P L +DDD  TLDWARNNTASIYHPTGTCKMGQG  +VVD+RLRVHGI+GLRVADCSIMPEIVSGNTNAPAIMIGEKASD+ILED+
Sbjct:  334 MAASLATGFLKTRPDVETPDIQFHVQPLSAENPGKGADPFSAFTMSVCQLRPESRGEIRLKSADGRAYPAIVPNYLSTTTDQQTIVEGIKIARRIARNAPLTSKISEEYRPNPSLDIDDDAGTLDWARNNTASIYHPTGTCKMGQGKDAVVDDRLRVHGIAGLRVADCSIMPEIVSGNTNAPAIMIGEKASDMILEDA 531

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BLAST of choline dehydrogenase vs. nr
Match: gi|1280215902|gb|PJI92842.1| (choline dehydrogenase [Loktanella maricola])

HSP 1 Score: 229.95 bits (585), Expect = 2.064e-70
Identity = 123/198 (62.12%), Postives = 128/198 (64.65%), Query Frame = 0

Query:    1 MAASLATGFIKTRPTLETPDIQFHVQPLSAENPGKG----------------------------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDS 146
            MAASLATGF+KTR  +ETPDIQFHVQPLSAENPGKG                                                    VNIAR+IARH PL  KI  E RP   LPMDD   TLDWARNNTASIYHPTGTCKMGQ  G+VVD RLRVHGI GLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILED+
Sbjct:  334 MAASLATGFLKTRDDIETPDIQFHVQPLSAENPGKGADKFSAFTMSVCQLRPESKGEIRLQSNDPKAYPRIIPNYLSTETDCRTVVAGVNIARKIARHAPLTSKISSEFRPHADLPMDDYEATLDWARNNTASIYHPTGTCKMGQNKGAVVDARLRVHGIDGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDA 531

[Close]

BLAST of choline dehydrogenase vs. nr
Match: gi|1282008741|ref|WP_100367617.1| (choline dehydrogenase [Loktanella maricola])

HSP 1 Score: 229.95 bits (585), Expect = 2.100e-70
Identity = 123/198 (62.12%), Postives = 128/198 (64.65%), Query Frame = 0

Query:    1 MAASLATGFIKTRPTLETPDIQFHVQPLSAENPGKG----------------------------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDS 146
            MAASLATGF+KTR  +ETPDIQFHVQPLSAENPGKG                                                    VNIAR+IARH PL  KI  E RP   LPMDD   TLDWARNNTASIYHPTGTCKMGQ  G+VVD RLRVHGI GLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILED+
Sbjct:  339 MAASLATGFLKTRDDIETPDIQFHVQPLSAENPGKGADKFSAFTMSVCQLRPESKGEIRLQSNDPKAYPRIIPNYLSTETDCRTVVAGVNIARKIARHAPLTSKISSEFRPHADLPMDDYEATLDWARNNTASIYHPTGTCKMGQNKGAVVDARLRVHGIDGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDA 536

[Close]

BLAST of choline dehydrogenase vs. nr
Match: gi|640635825|ref|WP_025063816.1| (choline dehydrogenase [Sulfitobacter guttiformis] >gi|751953369|gb|KIN74282.1| Alcohol dehydrogenase [Sulfitobacter guttiformis KCTC 32187])

HSP 1 Score: 227.639 bits (579), Expect = 1.408e-69
Identity = 118/198 (59.60%), Postives = 134/198 (67.68%), Query Frame = 0

Query:    1 MAASLATGFIKTRPTLETPDIQFHVQPLSAENPGKG----------------------------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILEDS 146
            MAASLATGF+KTRP +ETPDIQFHVQPLSAENPG+G                                                    VNIAR+IARH+PLA KI +E+RP+P L ++D   TLDWARNNTASIYHPTGTCKMG  + +VVD RLRVHGISGLRVADCSIMPEI+SGNTNAPAIMIGEKAS+L+LED+
Sbjct:  334 MAASLATGFMKTRPDIETPDIQFHVQPLSAENPGQGADKFSAFTMSVCQLRPESKGEIRLTSSNGRDYPKIVPNYLSTETDCRTIVAGVNIARRIARHSPLASKISEEYRPNPSLDIEDYDATLDWARNNTASIYHPTGTCKMGNDSAAVVDARLRVHGISGLRVADCSIMPEIISGNTNAPAIMIGEKASELVLEDN 531

[Close]

BLAST of choline dehydrogenase vs. nr
Match: gi|1222154746|ref|WP_090210075.1| (choline dehydrogenase [Loktanella litorea] >gi|1097295747|emb|SFS21814.1| choline dehydrogenase [Loktanella litorea])

HSP 1 Score: 225.713 bits (574), Expect = 8.576e-69
Identity = 119/197 (60.41%), Postives = 128/197 (64.97%), Query Frame = 0

Query:    1 MAASLATGFIKTRPTLETPDIQFHVQPLSAENPGKG----------------------------------------------------VNIARQIARHTPLADKILKEHRPDPGLPMDDDTKTLDWARNNTASIYHPTGTCKMGQGTGSVVDERLRVHGISGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLILED 145
            MAASLATGF+KTR  + TPDIQFHVQPLSAENPGKG                                                    V IAR+IARH PL  KI +E+RPDP L MDDD  TLDW RNNTASIYHPTGTC+MG G  +VVD RLRVHGI+GLRVADCSIMPEIVSGNTNAPAIMIGEKASD+ILED
Sbjct:  334 MAASLATGFLKTREDVATPDIQFHVQPLSAENPGKGADKFSAFTMSVCQLRPESRGEIRLAGRDPKTYPKIIPNYLSTETDCRTIVEGVKIARRIARHAPLTSKISEEYRPDPSLGMDDDEGTLDWVRNNTASIYHPTGTCRMGNGKDAVVDARLRVHGITGLRVADCSIMPEIVSGNTNAPAIMIGEKASDMILED 530

The following BLAST results are available for this feature:

BLAST of choline dehydrogenase vs. L. salmonis genes
BLAST of choline dehydrogenase vs. SwissProt
BLAST of choline dehydrogenase vs. nr

BLAST of choline dehydrogenase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2


Match Name	E-value	Identity	Description
EMLSAG00000012767	1.918e-19	50.56	supercontig:LSalAtl2s:LSalAtl2s96:160426:167507:-1...	[more]
EMLSAG00000000122	3.097e-18	49.43	supercontig:LSalAtl2s:LSalAtl2s101:523216:528117:1...	[more]

BLAST of choline dehydrogenase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|123048421\|sp\|Q0T7N0.1\|BETA_SHIF8	1.560e-23	32.80	RecName: Full=Oxygen-dependent choline dehydrogena...	[more]
gi\|114919\|sp\|P17444.1\|BETA_ECOLI	1.687e-23	32.80	RecName: Full=Oxygen-dependent choline dehydrogena...	[more]
gi\|54040065\|sp\|P64264.1\|Y1310_MYCBO	1.789e-23	47.66	RecName: Full=Uncharacterized GMC-type oxidoreduct...	[more]
gi\|118574768\|sp\|Q1RFM3.2\|BETA_ECOUT	2.670e-23	32.28	RecName: Full=Oxygen-dependent choline dehydrogena...	[more]
gi\|226698888\|sp\|B1LIJ7.1\|BETA_ECOSM	3.278e-23	34.22	RecName: Full=Oxygen-dependent choline dehydrogena...	[more]
gi\|42558874\|sp\|Q8X6C6.1\|BETA_ECO57	3.476e-23	32.80	RecName: Full=Oxygen-dependent choline dehydrogena...	[more]
gi\|166991271\|sp\|A7ZI50.1\|BETA_ECO24	3.616e-23	32.80	RecName: Full=Oxygen-dependent choline dehydrogena...	[more]
gi\|118574767\|sp\|Q0TKW1.2\|BETA_ECOL5	4.146e-23	41.18	RecName: Full=Oxygen-dependent choline dehydrogena...	[more]
gi\|42558866\|sp\|Q8FKI9.2\|BETA_ECOL6	4.527e-23	41.18	RecName: Full=Oxygen-dependent choline dehydrogena...	[more]
gi\|81695907\|sp\|Q6FDF9.1\|BETA_ACIAD	4.639e-23	40.58	RecName: Full=Oxygen-dependent choline dehydrogena...	[more]

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BLAST of choline dehydrogenase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1133994461\|emb\|SIT91440.1\|	1.885e-72	63.13	choline dehydrogenase [Loktanella rosea]	[more]
gi\|1140802160\|ref\|WP_076661018.1\|	2.233e-72	63.13	choline dehydrogenase [Loktanella rosea]	[more]
gi\|944381534\|ref\|WP_055687391.1\|	3.985e-72	62.63	choline dehydrogenase [Loktanella sp. 5RATIMAR09] ...	[more]
gi\|942094247\|ref\|WP_055296158.1\|	5.924e-72	62.63	choline dehydrogenase [Loktanella sp. 1ANDIMAR09] ...	[more]
gi\|495506420\|ref\|WP_008231067.1\|	1.139e-71	62.63	choline dehydrogenase [Roseobacter sp. CCS2] >gi\|1...	[more]
gi\|1221907711\|ref\|WP_089992147.1\|	4.991e-71	60.61	choline dehydrogenase [Loktanella koreensis] >gi\|1...	[more]
gi\|1280215902\|gb\|PJI92842.1\|	2.064e-70	62.12	choline dehydrogenase [Loktanella maricola]	[more]
gi\|1282008741\|ref\|WP_100367617.1\|	2.100e-70	62.12	choline dehydrogenase [Loktanella maricola]	[more]
gi\|640635825\|ref\|WP_025063816.1\|	1.408e-69	59.60	choline dehydrogenase [Sulfitobacter guttiformis] ...	[more]
gi\|1222154746\|ref\|WP_090210075.1\|	8.576e-69	60.41	choline dehydrogenase [Loktanella litorea] >gi\|109...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold1244_size53516	supercontig	scaffold1244_size53516:27751..28347 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	P:oxidation-reduction process

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold1244_size53516-processed-gene-0.7-mRNA-1	snap_masked-scaffold1244_size53516-processed-gene-0.7-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold1244_size53516:27751..28347+

gene from alignment at scaffold1244_size53516:27751..28347+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold1244_size53516-processed-gene-0.7 ID=snap_masked-scaffold1244_size53516-processed-gene-0.7|Name=choline dehydrogenase|organism=Tigriopus kingsejongensis|type=gene|length=597bp|location=Sequence derived from alignment at scaffold1244_size53516:27751..28347+ (Tigriopus kingsejongensis)
ATGGCGGCGTCCTTGGCGACCGGATTTATCAAAACACGTCCCACGCTTGA
GACCCCAGACATCCAGTTTCACGTCCAGCCTTTATCGGCTGAAAATCCGG
GCAAAGGTGCTGACCGGTTTTCGGCCTTCACAATGTCGGTTTGCCAATTG
CGCCCTGAATCGCGCGGCGAAATACGGCTGAAAGCTGCGGATCCAAGACG
CTATCCTGCGATTATTCCTCATTATCTTTCGACAAAAACCGATTGCGGCA
CCCTTGTTGCAGGCGTCAATATCGCCAGACAGATCGCACGCCACACGCCC
TTGGCCGATAAAATCCTGAAAGAACATCGCCCCGATCCTGGCCTGCCGAT
GGACGATGACACCAAGACGTTGGACTGGGCGCGCAACAACACCGCCTCGA
TCTACCATCCGACAGGAACCTGTAAGATGGGCCAAGGCACGGGATCTGTT
GTGGATGAACGGCTGCGGGTGCACGGGATCAGCGGGTTGCGAGTTGCAGA
TTGCTCTATCATGCCAGAAATCGTGTCAGGCAATACGAATGCGCCTGCAA
TTATGATCGGGGAAAAGGCGTCGGATTTGATTTTGGAAGACAGTTAA

Synonyms

The feature 'choline dehydrogenase' has the following synonyms


Synonym
Tk10404

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