vitamin d3 receptor b-like, snap_masked-scaffold1268_size51707-processed-gene-0.2 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of vitamin d3 receptor b-like vs. L. salmonis genes
Match: EMLSAG00000012965 (supercontig:LSalAtl2s:LSalAtl2s98:1224628:1226761:1 gene:EMLSAG00000012965 transcript:EMLSAT00000012965 description:"snap_masked-LSalAtl2s98-processed-gene-12.8") HSP 1 Score: 206.453 bits (524), Expect = 4.901e-59 Identity = 101/243 (41.56%), Postives = 148/243 (60.91%), Query Frame = 0 Query: 336 FTSEEVFLVDNIMNTEIATTRSIPVNPEVLMVMIDAAKKGTAIPYPALVEGYTICMRRIIQFVSKLDFFQSFSLPDQRSLLLHNTDMIVNIRSARLLRPGINLQAQVNHATGGPSLEPACASMDLFKCQERLEYKQIFQSPWACDPHHEAQFASLMENLFHLEMDVTTTTLMSMIVLFSTSYTDLKDSARAVQNQEFFSQLLYRYLGSMIGRKNATQLLPKYMHMISQLEEMSQIMMTKRLTL 578 F+ E L+ NIM +E +++ IP+ E + MI+ + P +EGY +CMRRIIQ S LDFF FS+ DQ++LLL NTDMIVNIR+AR + G++ + + +P MD F QIFQSPWAC E ++ LM+ +F L++D +T L+SM+ LFS++ + D RA + QEFF+ L+ +Y+ +G+ A QLLPKY+ MI+ LEEM+Q+M+ KRL + Sbjct: 389 FSDYECNLISNIMISEEESSKLIPLRSETMAXMINCSYSNKTFPQDVCLEGYLVCMRRIIQLSSMLDFFTCFSMEDQKALLLTNTDMIVNIRTARFFQHGVHFKKHIFFVNNTDD-DPKYGRMDTF---------QIFQSPWACSDEDEKKYNDLMKKIFDLQLDEISTVLISMMSLFSSTNAKIHDELRANKTQEFFTNLMKKYIIHHVGKDAACQLLPKYIFMIAHLEEMAQVMVXKRLNI 621 HSP 2 Score: 70.0922 bits (170), Expect = 7.144e-13 Identity = 25/34 (73.53%), Postives = 32/34 (94.12%), Query Frame = 0 Query: 114 NKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMT 147 NK+C +TKHTRKHCQYCRF KC+++GM++SWVMT Sbjct: 27 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 60
BLAST of vitamin d3 receptor b-like vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 166.007 bits (419), Expect = 2.343e-45 Identity = 84/244 (34.43%), Postives = 143/244 (58.61%), Query Frame = 0 Query: 334 LPFTSEEVFLVDNIMNTEIATTRSIPVNPEVLMVMIDAAKKGTAIPYPALVEGYTICMRRIIQFVSKLDFFQSFSLPDQRSLLLHNTDMIVNIRSARLLRPGINLQAQVNHATGGPSLEPACASMDLFKCQERLEYKQIFQSPWACDPHHEAQFASLMENLFHLEMDVTTTTLMSMIVLFSTSY-TDLKDSARAVQNQEFFSQLLYRYLGSMIGRKNATQLLPKYMHMISQLEEMSQIMMTKRL 576 + F E+ LV ++ EI + + IP+N + ++ ++ IP+ + GY C++RI F++K++FF + S DQ+ LLL+N DM+VNI++AR L P N+ Q G + E +C + + Y++IF++PW + Q+ +LM+ +F LEMD T L+ + +FST+ DL + ++ Q+ FS LLY+YL S IG + L PKY+++++QLEEM++ ++ KRL Sbjct: 233 MSFNKMEIHLVQEMLYWEIESRKKIPLNSVNMKSFMEYSQLNEPIPFEISLSGYNTCVQRITMFMTKINFFAALSPEDQKKLLLNNVDMVVNIKTARYLHPNNNITEQFEIINGKNNSEKSCTTSP--ATSNNVYYQEIFKNPWCSSFEDKTQYKALMKAIFDLEMDEITIILLIGLTIFSTTNCVDLDNINLIMRFQDVFSHLLYKYLCSTIGNSSTFLLFPKYINILAQLEEMAKTILNKRL 474 HSP 2 Score: 146.747 bits (369), Expect = 1.980e-38 Identity = 92/235 (39.15%), Postives = 133/235 (56.60%), Query Frame = 0 Query: 63 RKRPKFIRKVECKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKARIKR------------VTKDSGS--------QSESAMGSEMEHSRPGEHSLFGAMHFLAESHSEH-----HPHSNPLLAGGHEDSSSHSYSHEEIPHT-----YGMTARHSVSSPTPSSSTYSDYTPLSQPSPFDCSTS 267 +KR KFIRKV C +CSD ANDHIHYGAIAC SCRAFFRR V NA Y+CS++K+C ITK TRKHCQ+CRF KC+ GM+ +WVM+E +KREKKEK R+K+ V K S + Q+ S M + + S+F + L E+ H ++ ++ + S S++ EI + + +R + + + ++ +Y+ L++P PF+ S S Sbjct: 52 KKRAKFIRKVTCHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVMSESEKREKKEKIRLKKLKAQQLLDPENGVKKSSFTPEWDKMLFQNNSNMHNMGNSTYDMSFSIFSKKNTLNTFSEEYRNCYGHYRTSHIIQDCFD--SGMSFNKMEIHLVQEMLYWEIESRKKIPLNSVNMKSFMEYSQLNEPIPFEISLS 284
BLAST of vitamin d3 receptor b-like vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 124.79 bits (312), Expect = 8.060e-31 Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 0 Query: 62 KRKRPKFIRKVECKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKARIKRVTKD 166 KR++PK V C VC D A DHIHYG IAC+SCRAFFRR V + Y+CS +++C IT TRK+CQ+CR++KC+ GM+ SWV++EE EK + IK V K+ Sbjct: 80 KRRKPKMTEMV-CNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEE---EKSSRNLIKYVRKN 180 HSP 2 Score: 67.0106 bits (162), Expect = 5.332e-12 Identity = 58/245 (23.67%), Postives = 118/245 (48.16%), Query Frame = 0 Query: 334 LPFTSEEVFLVDNIMNTEIATTRSIPVNPEVLMVMIDAAKKGTAIPYPA--LVEGYTICMRRIIQFVSKLDFFQSFSLPDQRSLLLHNTDMIVNIRSARLL-RPGI-NLQAQVNHATGGP---SLEPACASMDLFKCQERLEYKQIFQSPWACDPHHEAQFASLMENLFHLEMDVTTTTLMSMIVLFSTSYTDLKDSARAVQNQEFFSQLLYRYLGSMIGRKNATQLLPKYMHMISQLEEMSQIM 571 L FT+EE +DN++ + +T IP+ PE++M I +++ + + E Y + R+ +F + +D F+ + D++ LL N D + +R+ + G NL +Q+ + TG P ++ P S++ ++F+ PWA H F + L + L+ ++ LFS +++ + Q QE + L YRYL S + ++ ++ ++ ++S+L +S ++ Sbjct: 243 LCFTTEEXRHIDNLIFAQDSTRNLIPM-PELVMDEILEMTNISSLNMTSKGITEIYRVIYSRVAKFATYIDHFEELTSDDKKLLLSKNMDSMAILRTVVCFNKDGTGNLTSQLKN-TGSPIYGNVGPYYISVE-----------RVFRHPWAKSEEHRHLFKETFRKIASLGLGEKAAMLLQLVTLFSVLDLPVQERNKIEQFQEQMALLCYRYLKSQKIKFSSNDMIKVFV-LLSELRYLSNLL 473
BLAST of vitamin d3 receptor b-like vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 102.064 bits (253), Expect = 2.500e-23 Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAP---YYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKK 155 C++C +VA H++YG C SCRAFFRR V N+ CSQ K C I TRK CQ CRFQKC++ GMR SWV + ++R KK Sbjct: 107 CQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKK 191
BLAST of vitamin d3 receptor b-like vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 100.523 bits (249), Expect = 8.719e-23 Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYY---CSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKK 155 C++C +VA H++YG C SCRAFFRR V N+ CS+ + C I TRK CQ CRFQKC++ GMRASWV+ + ++R KK Sbjct: 106 CQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSKK 190
BLAST of vitamin d3 receptor b-like vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 91.6633 bits (226), Expect = 7.042e-20 Identity = 43/99 (43.43%), Postives = 64/99 (64.65%), Query Frame = 0 Query: 60 KPKRKRPKFIRKVECKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAP--YYC-----SQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDK 151 K +++RP+ + V C++C D+A H HYGAIAC+SCRAFF R V+ + C ++ C ITK TR HCQ+CR++ C++ GM S+V T E++ Sbjct: 124 KKRKRRPEPMTDV-CRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221
BLAST of vitamin d3 receptor b-like vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13") HSP 1 Score: 88.9669 bits (219), Expect = 5.931e-19 Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKARIKRVTKDSGSQSESAMGSEMEHSRPGEHSLFGAM 193 C VC D A HYGA +C C+ FFRR V Y C QN++C + K R +C+YCR + C+ GM+ S V E D+ R K KD S +E + + + + G+ SL ++ Sbjct: 151 CAVCGDRATGK-HYGAASCDGCKGFFRRSVRKERVYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRI----SCRKKTSAKDMNSANELTVTALLNADKVGQKSLLNSI 265
BLAST of vitamin d3 receptor b-like vs. L. salmonis genes
Match: EMLSAG00000012486 (supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1 gene:EMLSAG00000012486 transcript:EMLSAT00000012486 description:"maker-LSalAtl2s91-snap-gene-4.8") HSP 1 Score: 88.9669 bits (219), Expect = 1.027e-18 Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMR 141 C VC D A+ HYGAI+C C+ FF+R + Y C NK C +TKH R CQYCR QKC+A+GMR Sbjct: 220 CVVCGDRASGR-HYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 286
BLAST of vitamin d3 receptor b-like vs. L. salmonis genes
Match: EMLSAG00000000733 (supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 gene:EMLSAG00000000733 transcript:EMLSAT00000000733 description:"maker-LSalAtl2s1117-snap-gene-1.23") HSP 1 Score: 83.1889 bits (204), Expect = 6.735e-17 Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 0 Query: 47 RGGHSICGKASQGKPKRKRPKFIRKVECKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGM 140 R G+S CG + I + CKVC D ++ +HYG I C C+ FFRR ++ Y C + K+C + + R CQ+CR QKC+A+GM Sbjct: 22 RSGNSACGGSDSNNSVHNAQ--IEIIPCKVCGDKSSG-VHYGVITCEGCKGFFRRSQSSVVNYQCPRQKNCIVDRVNRNRCQFCRLQKCLALGM 112
BLAST of vitamin d3 receptor b-like vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0") HSP 1 Score: 82.4185 bits (202), Expect = 8.178e-17 Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKE 156 C VC D A+ + HY A+AC C+ FFRR + N+ Y C N C I + R+ CQ CR +KC A GMRA V+ E +K++ Sbjct: 173 CLVCGDRASGY-HYNALACEGCKGFFRRSITKNSNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQKRQ 254
BLAST of vitamin d3 receptor b-like vs. SwissProt
Match: gi|1351191|sp|P49117.1|NR2C2_MOUSE (RecName: Full=Nuclear receptor subfamily 2 group C member 2; AltName: Full=Orphan nuclear receptor TAK1; AltName: Full=Orphan nuclear receptor TR4; AltName: Full=Testicular receptor 4) HSP 1 Score: 88.1965 bits (217), Expect = 3.619e-17 Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 0 Query: 59 GKPKRKRPKFIRKVECKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTE----EDKREK 154 GK +RP+ + C VC D A+ HYGA++C C+ FF+R V N Y C ++ C I KH R CQ+CR +KC+ +GM+ V +E + +REK Sbjct: 104 GKADVQRPQVVEY--CVVCGDKASGR-HYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREK 200
BLAST of vitamin d3 receptor b-like vs. SwissProt
Match: gi|1730013|sp|P55094.1|NR2C2_RAT (RecName: Full=Nuclear receptor subfamily 2 group C member 2; AltName: Full=Orphan nuclear receptor TR4; AltName: Full=Testicular receptor 4) HSP 1 Score: 88.1965 bits (217), Expect = 3.651e-17 Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 0 Query: 59 GKPKRKRPKFIRKVECKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTE----EDKREK 154 GK +RP+ + C VC D A+ HYGA++C C+ FF+R V N Y C ++ C I KH R CQ+CR +KC+ +GM+ V +E + +REK Sbjct: 104 GKADVQRPQVVEY--CVVCGDKASGR-HYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREK 200
BLAST of vitamin d3 receptor b-like vs. SwissProt
Match: gi|82201033|sp|Q6GN21.1|N2C1A_XENLA (RecName: Full=Nuclear receptor subfamily 2 group C member 1-A; AltName: Full=Developmental orphan receptor 2-A; Short=DOR2-A; Short=xDOR2-A; AltName: Full=Orphan nuclear receptor TR2-A; AltName: Full=Testicular receptor 2-A) HSP 1 Score: 88.1965 bits (217), Expect = 4.185e-17 Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTE----EDKREK 154 C VC D A+ HYGA+ C C+ FF+R + N Y C +K C I KH R CQYCR Q+CM++GM+ V E E REK Sbjct: 152 CVVCGDKASGR-HYGAVTCEGCKGFFKRSIRKNLVYTCRGSKDCVINKHYRNRCQYCRLQRCMSLGMKQDSVQCERKPIEVSREK 235
BLAST of vitamin d3 receptor b-like vs. SwissProt
Match: gi|123892381|sp|Q28CK1.1|NR2C1_XENTR (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Developmental orphan receptor 2; Short=DOR2; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2) HSP 1 Score: 87.8113 bits (216), Expect = 5.296e-17 Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTE----EDKREK 154 C VC D A+ HYGA+ C C+ FF+R + N Y C +K C I KH R CQYCR Q+C+A+GM+ V E E REK Sbjct: 152 CVVCGDKASGR-HYGAVTCEGCKGFFKRSIRKNLVYTCRGSKDCVINKHYRNRCQYCRLQRCIALGMKQDSVQCERKPIEVSREK 235
BLAST of vitamin d3 receptor b-like vs. SwissProt
Match: gi|399369|sp|P31396.1|HR3_DROME (RecName: Full=Probable nuclear hormone receptor HR3; Short=dHR3; AltName: Full=Nuclear receptor subfamily 1 group F member 4) HSP 1 Score: 87.4261 bits (215), Expect = 5.749e-17 Identity = 63/229 (27.51%), Postives = 106/229 (46.29%), Query Frame = 0 Query: 41 LDSSANRGGHS-ICGKASQGKPKRKRPKFIRKVECKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWV----MTEEDKREKKEKARIKRVTKDSGSQSESAMGSEMEHSRPGEHSLFGAMHFLAESHSEHHPHSNPLLAGGHEDS-----SSHSYSHEEIPHTYGMTARHSVSSPTPSSSTYSDYTPLSQP 259 L++ AN G S + A Q I + CKVC D ++ +HYG I C C+ FFRR ++ Y C +NK C + + R CQYCR QKC+ +GM V M+++ + + +++ R R +QS++A S + ++ + S HH + N +GG+ ++ S + YS P T ++ +S+ S+TY + + P Sbjct: 17 LEAHANNLGQSNVQSPAGQNNSSGSIKAQIEIIPCKVCGDKSSG-VHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRFHRAQM--RAQSDAAPDSSVYDTQTP-----------SSSDQLHHNNYNS-YSGGYSNNEVGYGSPYGYSASVTPQ---QTMQYDISADYVDSTTYEPRSTIIDP 227
BLAST of vitamin d3 receptor b-like vs. SwissProt
Match: gi|1706575|sp|P49882.1|ECR_CHITE (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; AltName: Full=Ecdysteroid receptor; AltName: Full=Nuclear receptor subfamily 1 group H member 1) HSP 1 Score: 87.0409 bits (214), Expect = 7.504e-17 Identity = 53/160 (33.12%), Postives = 80/160 (50.00%), Query Frame = 0 Query: 8 GYWKPKTEFSEDESNSPTGSLTESSLAAHMAGVLDSSANRGGHSICGKASQGKPKRKRPKFIRKVECKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTE-------EDKREKKEKARI 160 G+ P + E+ SP L + +++ HM LD GK S K K P+ ++ C VC D A+ + HY A+ C C+ FFRR V NA Y C C + + R+ CQ CR +KC+A+GMR V+ E ++K+ +KEK ++ Sbjct: 65 GFSSPDVNY---EAYSPNSKLDDGNMSVHMGDGLD-----------GKKSSSK-KGPVPRQQEEL-CLVCGDRASGY-HYNALTCEGCKGFFRRSVTKNAVYCCKFGHECEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKV 207
BLAST of vitamin d3 receptor b-like vs. SwissProt
Match: gi|3041719|sp|P22448.2|RARB_CHICK (RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName: Full=Nuclear receptor subfamily 1 group B member 2) HSP 1 Score: 86.2705 bits (212), Expect = 9.584e-17 Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKK 155 C VC D ++ + HYG AC C+ FFRR + N Y C ++K+C I K TR CQYCR QKC +GM V + +K++K+ Sbjct: 88 CFVCQDKSSGY-HYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE 168
BLAST of vitamin d3 receptor b-like vs. SwissProt
Match: gi|17367843|sp|Q9W6B3.1|RARB_COTJA (RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName: Full=Nuclear receptor subfamily 1 group B member 2) HSP 1 Score: 86.2705 bits (212), Expect = 9.584e-17 Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKK 155 C VC D ++ + HYG AC C+ FFRR + N Y C ++K+C I K TR CQYCR QKC +GM V + +K++K+ Sbjct: 88 CFVCQDKSSGY-HYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE 168
BLAST of vitamin d3 receptor b-like vs. SwissProt
Match: gi|1708295|sp|P49868.1|HR3_GALME (RecName: Full=Probable nuclear hormone receptor HR3; Short=gHR3; AltName: Full=Nuclear receptor subfamily 1 group F member 4) HSP 1 Score: 86.6557 bits (213), Expect = 1.014e-16 Identity = 48/148 (32.43%), Postives = 69/148 (46.62%), Query Frame = 0 Query: 11 KPKTEFSEDESNSPTGSLTESSLAAHMAGVLDSSANRGGHSICGKASQGKPKRKRPKFIRKVECKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKA 158 +P T+ N +T S+A + SS G SI G K I + CKVC D ++ +HYG I C C+ FFRR + Y C +NK+C + + R CQYCR QKC+ +GM V ++++EK Sbjct: 45 EPHTDVQGVMHNQMGMDITSGSVADSTSPPPGSSEGMFGSSISGMFMDKKAANSIRAQIEIIPCKVCGDKSSG-VHYGVITCEGCKGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKV 191
BLAST of vitamin d3 receptor b-like vs. SwissProt
Match: gi|10720385|sp|Q20765.2|NHR7_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-7) HSP 1 Score: 86.6557 bits (213), Expect = 1.069e-16 Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGV-NANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKARIKRVTKDSGSQSES 173 C VC D IHYG +AC+ C+ FFRR V + Y C K+C +TK R C+YCRF+KC+ +GM +V + REK +K + K S S+S S Sbjct: 9 CAVCGDTPA-KIHYGVLACFGCKGFFRRAVKDGRNKYVCRFEKNCEVTKFERNACRYCRFRKCLLVGMNPDYVRPD---REKSKKGKTVLSKKKSVSRSLS 105
BLAST of vitamin d3 receptor b-like vs. nr
Match: gi|1067097359|ref|XP_018010669.1| (PREDICTED: uncharacterized protein LOC108668052 [Hyalella azteca]) HSP 1 Score: 103.219 bits (256), Expect = 3.761e-19 Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 0 Query: 73 ECKVCSDVANDHIHYGAIACYSCRAFFRRGVNANA--PYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKARIKRV 163 +C VC DVA + H+G +C SC+AFFRR V NA + C K C I K +RK CQYCRF KC+AIGM SWVM+E ++R+ E+ + +R+ Sbjct: 123 QCGVCGDVAKSN-HFGGRSCDSCKAFFRRSVQNNAYRGFNCPYEKKCVIAKTSRKACQYCRFHKCLAIGMEKSWVMSEAERRKMMEQRQERRI 214
BLAST of vitamin d3 receptor b-like vs. nr
Match: gi|1228381880|ref|XP_021952465.1| (steroid hormone receptor family member cnr14-like isoform X1 [Folsomia candida]) HSP 1 Score: 102.449 bits (254), Expect = 6.143e-19 Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANA--PYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKARIKRVTK 165 C+VC D+A +H+G ++C SC+AFFRR V+ +A + C + SC I+K TRK CQ CRF+KC+ IGM WVM+EE+++ + +K++ K Sbjct: 182 CEVCGDIAKS-LHFGGLSCDSCKAFFRRSVHKDAHLQFSCGYDNSCHISKQTRKSCQKCRFEKCIRIGMEKKWVMSEEERKLLNYQREVKKINK 274
BLAST of vitamin d3 receptor b-like vs. nr
Match: gi|1228381882|ref|XP_021952466.1| (retinoic acid receptor beta-like isoform X2 [Folsomia candida]) HSP 1 Score: 102.064 bits (253), Expect = 6.866e-19 Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANA--PYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKARIKRVTK 165 C+VC D+A +H+G ++C SC+AFFRR V+ +A + C + SC I+K TRK CQ CRF+KC+ IGM WVM+EE+++ + +K++ K Sbjct: 170 CEVCGDIAKS-LHFGGLSCDSCKAFFRRSVHKDAHLQFSCGYDNSCHISKQTRKSCQKCRFEKCIRIGMEKKWVMSEEERKLLNYQREVKKINK 262
BLAST of vitamin d3 receptor b-like vs. nr
Match: gi|308511821|ref|XP_003118093.1| (CRE-NHR-35 protein [Caenorhabditis remanei] >gi|308238739|gb|EFO82691.1| CRE-NHR-35 protein [Caenorhabditis remanei] >gi|1233654203|gb|OZG06848.1| hypothetical protein FL82_01044, partial [Caenorhabditis remanei] >gi|1338207896|gb|POM48825.1| hypothetical protein FL81_02243 [Caenorhabditis remanei]) HSP 1 Score: 99.7525 bits (247), Expect = 1.677e-18 Identity = 47/89 (52.81%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEED---KREKKEKAR 159 C +CSDVA HYGAIAC C+ FFRR V N Y+C C I KH R C+YCRF KC+A GMR V +E D KREKK+ R Sbjct: 21 CHICSDVATGR-HYGAIACNGCKGFFRRTVRRNYDYHCRFESKCEIDKHNRAVCRYCRFMKCIASGMRDDQVQSERDVIGKREKKDNVR 108
BLAST of vitamin d3 receptor b-like vs. nr
Match: gi|1069783916|ref|XP_018335653.1| (PREDICTED: nuclear hormone receptor HR96 isoform X1 [Agrilus planipennis] >gi|1069783918|ref|XP_018335654.1| PREDICTED: nuclear hormone receptor HR96 isoform X1 [Agrilus planipennis]) HSP 1 Score: 99.7525 bits (247), Expect = 2.079e-18 Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 0 Query: 71 KVE---CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKARIKRVTK 165 KVE C VC D A H ++ A+ C SC+AFFRR AN + C N SC IT TR+ CQ CR KC AIGMR S +M+EEDK +K++K R+ K Sbjct: 7 KVEIKICGVCGDKAFGH-NFNAVTCESCKAFFRRNALANKTFKCPFNDSCEITTVTRRFCQKCRLDKCFAIGMRKSLIMSEEDKIQKRQKIEENRINK 103
BLAST of vitamin d3 receptor b-like vs. nr
Match: gi|1325302227|ref|XP_023332665.1| (uncharacterized protein LOC111704608, partial [Eurytemora affinis]) HSP 1 Score: 100.908 bits (250), Expect = 2.440e-18 Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 0 Query: 62 KRKRPKFIRKVE-------CKVCSDVANDHIHYGAIACYSCRAFFRRGVNA--NAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKARIKR 162 KR++ I K E C VC D A H+HYG I CYSC+AFFRR V + + Y C C ++ H R+ CQ CRF+KC IGM ++WV+++E ++ K+++KR Sbjct: 855 KRRKKSEIDKNEDRRPISDCNVCGDKAIAHMHYGGICCYSCKAFFRRAVQSGKDKKYLCKGEGHCPVSVHNRRGCQKCRFEKCQEIGMVSTWVLSDEQCEQRFGKSKLKR 964
BLAST of vitamin d3 receptor b-like vs. nr
Match: gi|240978500|ref|XP_002402961.1| (retinoid X receptor, putative [Ixodes scapularis] >gi|215491252|gb|EEC00893.1| retinoid X receptor, putative, partial [Ixodes scapularis]) HSP 1 Score: 97.8265 bits (242), Expect = 3.036e-18 Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 0 Query: 59 GKPKRKRPKFIRKVECKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEK 157 G+P ++ P +V C VC D A + H+G I+C SC+AFFRR V A + C C IT +RK CQ CRF KC++IGM ASWVM+E+++R + ++ Sbjct: 76 GEPSQRLPCPAARV-CGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEARFTCPYQGRCHITLTSRKSCQACRFAKCLSIGMEASWVMSEQERRARMQQ 172
BLAST of vitamin d3 receptor b-like vs. nr
Match: gi|1273514091|gb|PIC18115.1| (hypothetical protein B9Z55_024126 [Caenorhabditis nigoni]) HSP 1 Score: 98.2117 bits (243), Expect = 3.657e-18 Identity = 46/89 (51.69%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEED---KREKKEKAR 159 C +CSDVA HYGAIAC C+ FFRR V N Y+C C I KH R C+YCRF KC+A GMR V +E D KREKK+ + Sbjct: 22 CHICSDVATGR-HYGAIACNGCKGFFRRTVRRNYEYHCRFESKCDIDKHNRAVCRYCRFMKCIASGMRDDQVQSERDVIGKREKKDNVK 109
BLAST of vitamin d3 receptor b-like vs. nr
Match: gi|268579139|ref|XP_002644552.1| (C. briggsae CBR-NHR-35 protein [Caenorhabditis briggsae] >gi|187027920|emb|CAP32991.1| Protein CBR-NHR-35 [Caenorhabditis briggsae]) HSP 1 Score: 98.2117 bits (243), Expect = 4.669e-18 Identity = 46/89 (51.69%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEED---KREKKEKAR 159 C +CSDVA HYGAIAC C+ FFRR V N Y+C C I KH R C+YCRF KC+A GMR V +E D KREKK+ + Sbjct: 22 CHICSDVATGR-HYGAIACNGCKGFFRRTVRRNYDYHCRFESKCDIDKHNRAVCRYCRFMKCIASGMRDDQVQSERDVIGKREKKDNVK 109
BLAST of vitamin d3 receptor b-like vs. nr
Match: gi|1273514092|gb|PIC18116.1| (hypothetical protein B9Z55_024126 [Caenorhabditis nigoni]) HSP 1 Score: 98.2117 bits (243), Expect = 4.943e-18 Identity = 46/89 (51.69%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 74 CKVCSDVANDHIHYGAIACYSCRAFFRRGVNANAPYYCSQNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEED---KREKKEKAR 159 C +CSDVA HYGAIAC C+ FFRR V N Y+C C I KH R C+YCRF KC+A GMR V +E D KREKK+ + Sbjct: 22 CHICSDVATGR-HYGAIACNGCKGFFRRTVRRNYEYHCRFESKCDIDKHNRAVCRYCRFMKCIASGMRDDQVQSERDVIGKREKKDNVK 109 The following BLAST results are available for this feature:
BLAST of vitamin d3 receptor b-like vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of vitamin d3 receptor b-like vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of vitamin d3 receptor b-like vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1268_size51707:23108..24844+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold1268_size51707-processed-gene-0.2 ID=snap_masked-scaffold1268_size51707-processed-gene-0.2|Name=vitamin d3 receptor b-like|organism=Tigriopus kingsejongensis|type=gene|length=1737bp|location=Sequence derived from alignment at scaffold1268_size51707:23108..24844+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'vitamin d3 receptor b-like' has the following synonyms
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