60s ribosomal protein l27a, snap_masked-scaffold127_size327531-processed-gene-2.17 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 60s ribosomal protein l27a vs. L. salmonis genes
Match: EMLSAG00000012539 (supercontig:LSalAtl2s:LSalAtl2s923:150712:153740:1 gene:EMLSAG00000012539 transcript:EMLSAT00000012539 description:"maker-LSalAtl2s923-augustus-gene-0.23") HSP 1 Score: 261.922 bits (668), Expect = 2.760e-87 Identity = 123/141 (87.23%), Postives = 130/141 (92.20%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIKKT 141 MSTNKKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHA+ NQYCP VNLDKLWSLVSEQTR KY K+ KKAPVIDV++AG+FKVLGKG LP QPVIVKAR FSR+AEEKIK Sbjct: 1 MSTNKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHAHTINQYCPSVNLDKLWSLVSEQTREKYAKDKKKAPVIDVTKAGYFKVLGKGLLPNQPVIVKARLFSRKAEEKIKSV 141
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|75060399|sp|Q56K03.3|RL27A_BOVIN (RecName: Full=60S ribosomal protein L27a) HSP 1 Score: 220.705 bits (561), Expect = 2.418e-73 Identity = 107/140 (76.43%), Postives = 122/140 (87.14%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKN-TKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M + +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMR++H+ NQ +CP VNLDKLW+LVSEQTR+ KN T AP+IDV R+G++KVLGKG LPKQPVIVKA+FFSR+AEEKIK Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQ--SFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|306526288|sp|P14115.5|RL27A_MOUSE (RecName: Full=60S ribosomal protein L27a; AltName: Full=L29) HSP 1 Score: 219.935 bits (559), Expect = 4.514e-73 Identity = 107/140 (76.43%), Postives = 122/140 (87.14%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKN-TKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M + +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMR++H+ NQ +CP VNLDKLW+LVSEQTR+ KN T AP+IDV R+G++KVLGKG LPKQPVIVKA+FFSR+AEEKIK Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQ--SFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|75076570|sp|Q4R723.1|RL27A_MACFA (RecName: Full=60S ribosomal protein L27a) HSP 1 Score: 219.935 bits (559), Expect = 4.563e-73 Identity = 107/140 (76.43%), Postives = 122/140 (87.14%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKN-TKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M + +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMR++H+ NQ +CP VNLDKLW+LVSEQTR+ KN T AP+IDV R+G++KVLGKG LPKQPVIVKA+FFSR+AEEKIK Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMRHYHLKRNQ--SFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|1173017|sp|P46776.2|RL27A_HUMAN (RecName: Full=60S ribosomal protein L27a; AltName: Full=Large ribosomal subunit protein uL15 >gi|60393659|sp|Q5REY2.3|RL27A_PONAB RecName: Full=60S ribosomal protein L27a) HSP 1 Score: 219.164 bits (557), Expect = 1.157e-72 Identity = 106/140 (75.71%), Postives = 122/140 (87.14%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKN-TKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M + +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGM+++H+ NQ +CP VNLDKLW+LVSEQTR+ KN T AP+IDV R+G++KVLGKG LPKQPVIVKA+FFSR+AEEKIK Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQ--SFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|59800187|sp|Q5R1X0.3|RL27A_PANTR (RecName: Full=60S ribosomal protein L27a) HSP 1 Score: 218.394 bits (555), Expect = 2.022e-72 Identity = 106/140 (75.71%), Postives = 122/140 (87.14%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKN-TKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M + +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGM+++H+ NQ +CP VNLDKLW+LVSEQTR+ KN T AP+IDV R+G++KVLGKG LPKQPVIVKA+FFSR+AEEKIK Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQ--SFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|1350712|sp|P47830.2|RL27A_XENLA (RecName: Full=60S ribosomal protein L27a; AltName: Full=L22) HSP 1 Score: 218.394 bits (555), Expect = 2.232e-72 Identity = 105/140 (75.00%), Postives = 121/140 (86.43%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTK-KAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M + +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMR++H+ NQ +CP +NLDKLW+LVSEQTRL + KN + AP+ID AG++KVLGKG LPKQPVIVKA+FFSR+AEEKIK Sbjct: 1 MPSKLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKKNQ--SFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIK 138
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|132846|sp|P18445.3|RL27A_RAT (RecName: Full=60S ribosomal protein L27a) HSP 1 Score: 218.009 bits (554), Expect = 2.659e-72 Identity = 106/140 (75.71%), Postives = 121/140 (86.43%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKK-APVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M + +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMR++H+ NQ +CP VNLDKLW+LVSEQTR+ KN AP+IDV R+G++KVLGKG LPKQPVIVKA+FFSR+AEEKIK Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQ--SFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|3122699|sp|O01358.1|RL27A_OSCTI (RecName: Full=60S ribosomal protein L27a; AltName: Full=Ribosomal protein RPL-27) HSP 1 Score: 202.601 bits (514), Expect = 3.083e-66 Identity = 99/139 (71.22%), Postives = 118/139 (84.89%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M+ + +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRIN DKYHPGYFGKVGMR FH+ N+ + YCP VN+D+LW+LV E+ + K + +KAPVID +AG+FKVLGKG LPKQP+IVKA+FFS +AE KIK Sbjct: 1 MAHSLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHL--NKNHHYCPTVNVDRLWALVPEEQKTKV--SAEKAPVIDCVKAGYFKVLGKGLLPKQPLIVKAKFFSHEAENKIK 135
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|20455458|sp|P41092.2|RL27A_DROME (RecName: Full=60S ribosomal protein L27a) HSP 1 Score: 196.438 bits (498), Expect = 9.709e-64 Identity = 98/147 (66.67%), Postives = 123/147 (83.67%), Query Frame = 0 Query: 2 STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQ--TRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIKKTE--CL 144 + +KKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMRNFH+ + +++ P +NLDKLWSLV + L+ EK+T KAPVID+ + G++K+LG+G+LP +PVIVKA++FS++AE+KIKK CL Sbjct: 3 NIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHL--RRQHKFRPEINLDKLWSLVGAEKFAELEKEKST-KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCL 146
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|2500273|sp|Q27021.1|RL27A_TENMO (RecName: Full=60S ribosomal protein L27a) HSP 1 Score: 191.43 bits (485), Expect = 8.138e-62 Identity = 93/140 (66.43%), Postives = 115/140 (82.14%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTK-KAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGK+GMRN+H+ N +++ P +NLDKLW+LVSEQTR KY+ + + KAPVID+ +AG++K+LGKG ++K F + E+KIK Sbjct: 1 MSTHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNYHLRRN--SKWAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKAGYYKLLGKGACLTNLSLLKPSFSLNRLEDKIK 138
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|817057959|ref|XP_012269909.1| (60S ribosomal protein L27a [Athalia rosae]) HSP 1 Score: 228.794 bits (582), Expect = 4.727e-74 Identity = 109/140 (77.86%), Postives = 128/140 (91.43%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTK-KAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGK+GMRN+H+ N ++CP +NLDKLW+LVSEQTRLKY+ +T KAPVID+ +AG++K+LGKG LPKQPVIVKA+FFS+QAE+KIK Sbjct: 1 MSTHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNYHLRKN--TKWCPSLNLDKLWTLVSEQTRLKYKNSTDGKAPVIDLVKAGYYKLLGKGRLPKQPVIVKAKFFSKQAEDKIK 138
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|861640902|gb|KMQ93357.1| (60s ribosomal protein l27a [Lasius niger]) HSP 1 Score: 229.565 bits (584), Expect = 5.258e-74 Identity = 108/139 (77.70%), Postives = 126/139 (90.65%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MST+KKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGG HHHRINFDKYHPGYFGK+GMRN+H+ N ++CP +NLDK+W+LVSEQTRLKY+ KAPVID+ +AG++K+LGKG LPKQPVIVKA+FFS+QAE+KIK Sbjct: 20 MSTHKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNYHLRRN--TKWCPAINLDKIWTLVSEQTRLKYKDVEGKAPVIDLVKAGYYKLLGKGRLPKQPVIVKAKFFSKQAEDKIK 156
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|1153816152|ref|XP_020284002.1| (60S ribosomal protein L27a [Pseudomyrmex gracilis]) HSP 1 Score: 228.794 bits (582), Expect = 5.272e-74 Identity = 108/139 (77.70%), Postives = 127/139 (91.37%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MST+KKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGG HHHRINFDKYHPGYFGK+GMRN+H+ N ++CP +NLDKLW+LVSEQTRLKY+ KAPVID+++AG++K+LGKG LPKQPVIVKA+FFS++AE+KIK Sbjct: 1 MSTHKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKLGMRNYHLRRN--TKWCPTINLDKLWTLVSEQTRLKYKDVENKAPVIDLTKAGYYKLLGKGRLPKQPVIVKAKFFSKRAEDKIK 137
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|826411303|ref|XP_012542680.1| (PREDICTED: 60S ribosomal protein L27a [Monomorium pharaonis]) HSP 1 Score: 228.794 bits (582), Expect = 5.508e-74 Identity = 108/139 (77.70%), Postives = 126/139 (90.65%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MST++KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGG HHHRINFDKYHPGYFGK+GMRN+H+ N ++CP +NLDKLW+LVSEQTRLKY+ KAPVID+ +AG++K+LGKG LPKQPVIVKA+FFS+QAE+KIK Sbjct: 1 MSTHRKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNYHLRRN--TKWCPTINLDKLWTLVSEQTRLKYKDVEGKAPVIDLVKAGYYKLLGKGRLPKQPVIVKAKFFSKQAEDKIK 137
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|1205898794|gb|OWF47954.1| (60S ribosomal protein L27a [Mizuhopecten yessoensis]) HSP 1 Score: 228.409 bits (581), Expect = 7.243e-74 Identity = 112/139 (80.58%), Postives = 121/139 (87.05%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M+T KKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMR FH N+ +CP VN+DKLWSLVS+QTR Y N +KAPVIDV RAG+FKVLGKGNLPKQP+IVKARFFSR AE KIK Sbjct: 1 MTTKLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRYFHKTMNK--FFCPTVNVDKLWSLVSQQTRDNYANNKEKAPVIDVIRAGYFKVLGKGNLPKQPMIVKARFFSRSAELKIK 137 The following BLAST results are available for this feature:
BLAST of 60s ribosomal protein l27a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 60s ribosomal protein l27a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of 60s ribosomal protein l27a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold127_size327531:242568..248881- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold127_size327531-processed-gene-2.17 ID=snap_masked-scaffold127_size327531-processed-gene-2.17|Name=60s ribosomal protein l27a|organism=Tigriopus kingsejongensis|type=gene|length=6314bp|location=Sequence derived from alignment at scaffold127_size327531:242568..248881- (Tigriopus kingsejongensis)back to top Synonyms
The feature '60s ribosomal protein l27a' has the following synonyms
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