60s ribosomal protein l27a, snap_masked-scaffold127_size327531-processed-gene-2.17 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 60s ribosomal protein l27a vs. L. salmonis genes
Match: EMLSAG00000012539 (supercontig:LSalAtl2s:LSalAtl2s923:150712:153740:1 gene:EMLSAG00000012539 transcript:EMLSAT00000012539 description:"maker-LSalAtl2s923-augustus-gene-0.23") HSP 1 Score: 261.922 bits (668), Expect = 2.760e-87 Identity = 123/141 (87.23%), Postives = 130/141 (92.20%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIKKT 141 MSTNKKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHA+ NQYCP VNLDKLWSLVSEQTR KY K+ KKAPVIDV++AG+FKVLGKG LP QPVIVKAR FSR+AEEKIK Sbjct: 1 MSTNKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHAHTINQYCPSVNLDKLWSLVSEQTREKYAKDKKKAPVIDVTKAGYFKVLGKGLLPNQPVIVKARLFSRKAEEKIKSV 141
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|74940256|sp|Q9BI14.1|R27A3_ENTHI (RecName: Full=60S ribosomal protein L27a-3) HSP 1 Score: 156.762 bits (395), Expect = 4.343e-48 Identity = 82/141 (58.16%), Postives = 107/141 (75.89%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYE--KNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M+T ++TR+ RGHVS G+GR+GKHRK GGRGNAGGQHH + F +HP YFGK GMR FH+ AN+ YCP +N+D LWSLV + + +Y+ K ++ PVID + G+FKVLGKG LPKQPVIV+AR+FS +A++KIK Sbjct: 1 MATRFRQTRRRRGHVSMGYGRIGKHRKQRGGRGNAGGQHHRKTWFTTFHPDYFGKHGMRVFHLKANK--YYCPSINVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIK 139
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|74940240|sp|Q9BH80.1|R27A2_ENTHI (RecName: Full=60S ribosomal protein L27a-2/4) HSP 1 Score: 155.992 bits (393), Expect = 7.409e-48 Identity = 82/141 (58.16%), Postives = 107/141 (75.89%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYE--KNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M+T ++TR+ RGHVS G+GR+GKHRK GGRGNAGGQHH + F +HP YFGK GMR FH+ AN+ YCP +N+D LWSLV + + +Y+ K ++ PVID + G+FKVLGKG LPKQPVIV+AR+FS +A++KIK Sbjct: 1 MATRFRQTRRRRGHVSMGYGRIGKHRKQRGGRGNAGGQHHRKTWFTTFHPDYFGKHGMRVFHLKANK--YYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIK 139
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|74940253|sp|Q9BI06.1|R27A1_ENTHI (RecName: Full=60S ribosomal protein L27a-1) HSP 1 Score: 155.992 bits (393), Expect = 9.836e-48 Identity = 82/141 (58.16%), Postives = 107/141 (75.89%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYE--KNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 M+T ++TR+ RGHVS G+GR+GKHRK GGRGNAGGQHH + F +HP YFGK GMR FH+ AN+ YCP +N+D LWSLV + + +Y+ K ++ PVID + G+FKVLGKG LPKQPVIV+AR+FS +A++KIK Sbjct: 1 MATRFRQTRRRRGHVSMGYGRIGKHRKQRGGRGNAGGQHHRKTWFTTFHPDYFGKHGMRVFHLKANK--YYCPSINVDSLWSLVGKDIQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIK 139
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|6094046|sp|O15883.1|RL27A_TRYBB (RecName: Full=60S ribosomal protein L27a; AltName: Full=L29) HSP 1 Score: 135.961 bits (341), Expect = 4.789e-40 Identity = 75/141 (53.19%), Postives = 97/141 (68.79%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIKKT 141 M T KKTR RG G+GRVGKHRKHP GRGNAGG+HHHRINF KYHPGYFGK GM ++H N + P +NLD L L+++ +K +K + PVID+ G+ K+LG G+L + P IVKAR+ S+ A++KI+K Sbjct: 1 MPTRFKKTRHQRGSTFCGYGRVGKHRKHPSGRGNAGGEHHHRINFRKYHPGYFGKCGMNHYHKKKN--TTWKPTINLDNLTKLMAKDEAMKAKKG-EVLPVIDLLANGYSKLLGNGHL-QAPCIVKARWVSKLADKKIRKA 137
BLAST of 60s ribosomal protein l27a vs. SwissProt
Match: gi|7674267|sp|O62581.1|RL27A_ENCCU (RecName: Full=60S ribosomal protein L27a) HSP 1 Score: 128.642 bits (322), Expect = 4.237e-37 Identity = 66/141 (46.81%), Postives = 92/141 (65.25%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIKKT 141 M+ KKTRKLRGHVSHG+GRVGKHRKH GGRG AGG H + F ++HP Y GK GMR +H N + Y ++ +LW ++ ++ R + N +K PVIDV G+ V+G ++P++VKAR+F+ A+E+I K Sbjct: 1 MTDRVKKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRVYHRKEN--SDYARPISSARLWGMIPKEQRYDFLDNPEKVPVIDVREFGYHVVVGGKLSLERPIVVKARYFTPSAKEEITKV 139
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|225712762|gb|ACO12227.1| (60S ribosomal protein L27a [Lepeophtheirus salmonis] >gi|225713762|gb|ACO12727.1| 60S ribosomal protein L27a [Lepeophtheirus salmonis] >gi|290462325|gb|ADD24210.1| 60S ribosomal protein L27a [Lepeophtheirus salmonis] >gi|290562277|gb|ADD38535.1| 60S ribosomal protein L27a [Lepeophtheirus salmonis]) HSP 1 Score: 257.299 bits (656), Expect = 2.505e-85 Identity = 123/139 (88.49%), Postives = 130/139 (93.53%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MSTNKKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHA+ NQYCP VNLDKLWSLVSEQTR KY K+ KKAPVIDV++AG+FKVLGKG LP QPVIVKAR FSR+AEEKIK Sbjct: 1 MSTNKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHAHTINQYCPSVNLDKLWSLVSEQTREKYAKDKKKAPVIDVTKAGYFKVLGKGLLPNQPVIVKARLFSRKAEEKIK 139
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|961374964|gb|ALS04226.1| (60S ribosomal protein L27a [Acartia pacifica]) HSP 1 Score: 251.521 bits (641), Expect = 4.988e-83 Identity = 119/139 (85.61%), Postives = 128/139 (92.09%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MSTNKKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVH N NQ+CP +NLDKLW+LV E+TR+K K+TK APVID S AG+FKVLGKG LPKQPVIVKARFFSR+AEEKIK Sbjct: 1 MSTNKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHPNVSNQFCPAINLDKLWTLVPEETRVKAAKDTKTAPVIDCSGAGYFKVLGKGILPKQPVIVKARFFSRRAEEKIK 139
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|1325300846|ref|XP_023332015.1| (60S ribosomal protein L27a-like [Eurytemora affinis]) HSP 1 Score: 250.751 bits (639), Expect = 1.017e-82 Identity = 121/139 (87.05%), Postives = 124/139 (89.21%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MST KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVH N N YCP +NLDKLWSLVSEQTR KY KAPVID SRAG+FKVLGKG LPKQPVIVKARFFSR AEEKIK Sbjct: 1 MSTCKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHPNISNNYCPAINLDKLWSLVSEQTRTKYADVKDKAPVIDCSRAGYFKVLGKGVLPKQPVIVKARFFSRVAEEKIK 139
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|961376548|gb|ALS05018.1| (60S ribosomal protein L27a [Centropages dorsispinatus]) HSP 1 Score: 249.21 bits (635), Expect = 4.609e-82 Identity = 118/139 (84.89%), Postives = 125/139 (89.93%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MST KKKTRKLRGHVSHGHGR+GKHRKHPGGRGN+GGQHHHRINFDKYHPGYFGKVGMRNFHVH N N +CP +NLDKLW+LVSEQTR KY T KAPVID +RAG FKVLGKG LPKQPVIVKARFFSR+AEEKIK Sbjct: 1 MSTCKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNSGGQHHHRINFDKYHPGYFGKVGMRNFHVHPNISNNFCPAINLDKLWTLVSEQTRTKYASVTDKAPVIDCNRAGIFKVLGKGALPKQPVIVKARFFSRRAEEKIK 139
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|961375786|gb|ALS04637.1| (60S ribosomal protein L27a [Pseudodiaptomus poplesia] >gi|961376096|gb|ALS04792.1| 60S ribosomal protein L27a [Pseudodiaptomus poplesia] >gi|1148369128|gb|AQS22800.1| 60S ribosomal protein l27a [Pseudodiaptomus poplesia]) HSP 1 Score: 248.44 bits (633), Expect = 9.932e-82 Identity = 119/139 (85.61%), Postives = 125/139 (89.93%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MST KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVH N +CP +NLDKLW+LVSEQTR KY + KAPVID SRAGFFKVLGKG LPKQPVIVKARFFSR+AEEKIK Sbjct: 1 MSTQKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHPNMSIHHCPAINLDKLWTLVSEQTRKKYADSKDKAPVIDCSRAGFFKVLGKGVLPKQPVIVKARFFSRRAEEKIK 139
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|961374966|gb|ALS04227.1| (60S ribosomal protein L27a [Acartia pacifica]) HSP 1 Score: 246.514 bits (628), Expect = 5.309e-81 Identity = 118/139 (84.89%), Postives = 127/139 (91.37%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MSTNKKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVH N NQ+ P +NLDKLW+LV E+TR+K K+TK APVID S AG+FKVLGKG LPKQPVIVKARFFSR+AEEKIK Sbjct: 1 MSTNKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHPNVSNQFRPAINLDKLWTLVPEETRVKAAKDTKTAPVIDCSGAGYFKVLGKGILPKQPVIVKARFFSRRAEEKIK 139
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|225718318|gb|ACO15005.1| (60S ribosomal protein L27a [Caligus clemensi]) HSP 1 Score: 243.817 bits (621), Expect = 6.964e-80 Identity = 122/141 (86.52%), Postives = 130/141 (92.20%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIKKT 141 MSTNKKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHA+ NQYCP VNLDKLWSLVS+QTR KY K+ KKAPVIDV++AG+FKVLGKG LP QPVIVKAR FSR+AEEKIK Sbjct: 1 MSTNKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHAHTANQYCPSVNLDKLWSLVSDQTRDKYAKDKKKAPVIDVTKAGYFKVLGKGLLPDQPVIVKARLFSRKAEEKIKSV 141
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|961375782|gb|ALS04635.1| (60S ribosomal protein L27a [Pseudodiaptomus poplesia] >gi|961375784|gb|ALS04636.1| 60S ribosomal protein L27a [Pseudodiaptomus poplesia]) HSP 1 Score: 240.35 bits (612), Expect = 1.481e-78 Identity = 116/139 (83.45%), Postives = 123/139 (88.49%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MST KKKTRKLRGHVSHGHGR+GKHRKH GGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFH H+N Y P +NLDKLW+LVSEQTR KY + KAPVID SRAG FKVLGKG+LPKQPVIVKARFFSR+AEEKIK Sbjct: 1 MSTCKKKTRKLRGHVSHGHGRIGKHRKHSGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHKHSNLAVYYSPTINLDKLWTLVSEQTRKKYADSKDKAPVIDCSRAGIFKVLGKGSLPKQPVIVKARFFSRRAEEKIK 139
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|961376440|gb|ALS04964.1| (60S ribosomal protein L27a [Pseudodiaptomus poplesia]) HSP 1 Score: 237.654 bits (605), Expect = 1.494e-77 Identity = 115/139 (82.73%), Postives = 120/139 (86.33%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MST KKTRKL GHVSHGHGR+GKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVH N +CP +NLDKLW+LVSEQT KY KAPVID S AGFFKVLGKG LPKQPVIVKARFFSR+AEEKIK Sbjct: 1 MSTQNKKTRKLPGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHPNMSIHHCPAINLDKLWTLVSEQTMKKYADRKDKAPVIDCSIAGFFKVLGKGVLPKQPVIVKARFFSRRAEEKIK 139
BLAST of 60s ribosomal protein l27a vs. nr
Match: gi|559373032|gb|AHB12474.1| (60S Ribosomal Protein L27A [Pantala flavescens]) HSP 1 Score: 237.654 bits (605), Expect = 1.796e-77 Identity = 113/139 (81.29%), Postives = 128/139 (92.09%), Query Frame = 0 Query: 1 MSTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANQPNQYCPGVNLDKLWSLVSEQTRLKYEKNTKKAPVIDVSRAGFFKVLGKGNLPKQPVIVKARFFSRQAEEKIK 139 MST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMRNFH+ N+ +CP +NLDKLW+LVSEQTRLKY++N +KAPVIDV +AG++KVLGKG LPKQPVIV+A+FFSR AEEKIK Sbjct: 1 MSTHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRKNK--LWCPSINLDKLWTLVSEQTRLKYKENKEKAPVIDVVKAGYYKVLGKGRLPKQPVIVRAKFFSRSAEEKIK 137 The following BLAST results are available for this feature:
BLAST of 60s ribosomal protein l27a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 60s ribosomal protein l27a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of 60s ribosomal protein l27a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold127_size327531:242568..248881- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold127_size327531-processed-gene-2.17 ID=snap_masked-scaffold127_size327531-processed-gene-2.17|Name=60s ribosomal protein l27a|organism=Tigriopus kingsejongensis|type=gene|length=6314bp|location=Sequence derived from alignment at scaffold127_size327531:242568..248881- (Tigriopus kingsejongensis)back to top Synonyms
The feature '60s ribosomal protein l27a' has the following synonyms
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