39s ribosomal protein mitochondrial, snap_masked-scaffold15_size728074-processed-gene-0.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Match: EMLSAG00000011569 (supercontig:LSalAtl2s:LSalAtl2s800:159706:160242:-1 gene:EMLSAG00000011569 transcript:EMLSAT00000011569 description:"augustus_masked-LSalAtl2s800-processed-gene-1.10") HSP 1 Score: 162.54 bits (410), Expect = 3.352e-51 Identity = 77/159 (48.43%), Postives = 109/159 (68.55%), Query Frame = 0 Query: 55 VRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLN----RFRKHSKPWEVLDD 209 +RN+NP NLE M+IGYKP GF ++KS YWN+L L+I+ HT A+V HWTG V AST EWAIRK LYN TDA AL + +I +R LQ G+ V LQ+ +++LQ+ERM+ FV +I++ G++ E +Y Q P +L+ + + + KPWEV+D+ Sbjct: 20 IRNKNPLNLEHMKIGYKPQGFLLDKKSVSYWNRLFLEISQNHTTAKVIHWTGRPVAQASTREWAIRKHLYNYTDATALHLLGTIIGERTLQTGVLEVNLQMTQEELQRERMSSFVESIRKTGLSTSESFQYTQRNPFRQLSLASQKPKNNFKPWEVIDE 178
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|41017797|sp|Q9H0U6.1|RM18_HUMAN (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; AltName: Full=Mitochondrial large ribosomal subunit protein uL18m; Flags: Precursor) HSP 1 Score: 105.916 bits (263), Expect = 1.321e-27 Identity = 54/137 (39.42%), Postives = 83/137 (60.58%), Query Frame = 0 Query: 48 DELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184 +E + NRNPRNLE++ + K G++ SRE+W++L + T H +A V H G V AST EWAI+K LY+T + VA E+I +V+AQRCL+AGI+ + Q + + M R +A+ E G+ + E ++ Sbjct: 41 NEAVAPEFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQR 177
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|41017793|sp|Q9CQL5.1|RM18_MOUSE (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; Flags: Precursor) HSP 1 Score: 104.76 bits (260), Expect = 3.578e-27 Identity = 60/173 (34.68%), Postives = 94/173 (54.34%), Query Frame = 0 Query: 12 RLLTRGMALGSGRSEVHTHLGPSPYIDESEKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184 + L+ L G + + T P+ D K +E + NRNPRNLE++ + K G+ +RE+W++L + T H +A V H G V AST EWAI+K LY+T + VA E+I +V+AQRCL+AGI+ + Q + + + R NA+ E G+ + E ++ Sbjct: 9 KCLSVCRKLECGFAALSTSSVPAVQPDVESK----ENEAVAPEFTNRNPRNLELLGVARKERGWATVWPNREFWHRLRVVKTQHHVEAFVEHLNGQVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEASSDSIKRLQNAMTESGVMLREPRR 177
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|115502821|sp|Q3ZBR7.1|RM18_BOVIN (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; Flags: Precursor) HSP 1 Score: 102.064 bits (253), Expect = 4.613e-26 Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 0 Query: 35 PYIDESEKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184 P + P+G +E + NRNPRNLE++ + K G+ SRE+W++L + + H +A V H G V AST EWAI+K LY+T VA E++ +V+AQRCL+AGI+ + Q + + M R + E G+ + E ++ Sbjct: 30 PVVKPEADPVG--NEAVAPEFTNRNPRNLELLAVARKERGWGTVWPSREFWHRLRVIRSQHHIEALVEHRNGQVVVSASTREWAIKKHLYSTKSVVACESVGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQIGMIEGGVVLQEPRR 177
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|465842|sp|P34378.1|RM18_CAEEL (RecName: Full=39S ribosomal protein L18, mitochondrial) HSP 1 Score: 77.7962 bits (190), Expect = 6.917e-17 Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWE--RKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQK-ERMTRFVNAIKEQGITIGE 181 NRNPRN E+M G+Q+E R +R Y K++L H + + H+ V AST E +I LY+ TD A I +V+A RCLQ+GI K+ ++K + T F A++E+G+T+ E Sbjct: 11 NRNPRNNELMGRQAPNTGYQFEKDRAARSYIYKVELVEGKSHREGRLVHYQDGVVISASTKEPSIASQLYSKTDTSAALNIGRVLALRCLQSGIHFAMPGATKEAIEKSQHQTHFFKALEEEGLTLKE 138
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1061487240|gb|ODN04316.1| (39S ribosomal protein L18, mitochondrial [Orchesella cincta]) HSP 1 Score: 136.732 bits (343), Expect = 2.202e-36 Identity = 66/193 (34.20%), Postives = 114/193 (59.07%), Query Frame = 0 Query: 21 GSGRSEVHTHLGPSPYID----ESEKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDD 209 S + + + + SP+ S+ ND +I + NRNP+NLE +RIG KP G+ +E++ +++WN++ L I+++H A + H+ G AS+ EW I+K+LY+T DA A + + +V+AQRCLQAGI+ V D+ +KE+++ F+ AI++ G+ + E Q P +N + PW++ +D Sbjct: 21 NSSIAGLDSSIAASPFAQCRFFSSKNEFPSNDSIIPKFINNRNPKNLEKLRIGEKPKGWCFEKEDKKFWNRVTLDISSRHISASIIHYLGQSPVMASSKEWCIKKYLYSTNDACAAKLVGQVLAQRCLQAGITEVACFFTPDERKKEKVSLFIKAIEDFGVGLMEPP---QILPDWNVNHWEIPETPWDIHED 210
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1228360410|ref|XP_021957034.1| (39S ribosomal protein L18, mitochondrial-like [Folsomia candida] >gi|1215276065|gb|OXA62374.1| hypothetical protein Fcan01_03511 [Folsomia candida]) HSP 1 Score: 136.346 bits (342), Expect = 3.472e-36 Identity = 70/169 (41.42%), Postives = 104/169 (61.54%), Query Frame = 0 Query: 41 EKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDD 209 +K PN+ LI V NRNPRNLE +RI K +G+ E++ R YWNKL +++T +H A+V H G AST EW I+KFLYNT D+V+ + I +V+A RCLQ GI+ + + ++D +KE+++ + A+++ G+T+ E Q E LN K WEV +D Sbjct: 49 KKEFPPNNTLIMDKVSNRNPRNLEKLRIAEKISGWDLEKEGRSYWNKLTIELTGRHITAKVVHVLGQIPVSASTNEWCIKKFLYNTRDSVSAKTIGQVLAHRCLQVGITELSCYLSEEDRKKEKISLIIGALEDGGVTLEEPG---QIEIPWSLNYPTMPEKSWEVHED 214
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1132377466|ref|XP_019844489.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Bactrocera dorsalis]) HSP 1 Score: 129.798 bits (325), Expect = 2.810e-34 Identity = 62/153 (40.52%), Postives = 99/153 (64.71%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDD 209 NRNPRNLE +RI +KPNG+ E+ R +W+KL+L ++ ++ AEV H+ + AST+EWAI+K LY TTD A +A+V+A RCLQ+GI+ + + D + ++ +F+ ++E G+ + E ++YV P + +H KPW+VL+D Sbjct: 31 NRNPRNLERLRIAHKPNGYFLEKPGRSFWHKLELTVSGRYVTAEVRHFQNGPIVGASTSEWAIKKHLYKTTDTPAFVNLARVLAMRCLQSGITEMACNV--DAVAGGKVEKFLKTLEENGVKLQEPERYVAPLPWDAV----RHEKPWDVLED 177
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1048047592|ref|XP_017478809.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Rhagoletis zephyria]) HSP 1 Score: 129.413 bits (324), Expect = 4.038e-34 Identity = 68/173 (39.31%), Postives = 106/173 (61.27%), Query Frame = 0 Query: 37 IDESEKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDD 209 I E KP G + V NRNPRNLE +RI +KPNG+ E+ R +W+KL+L I+ ++ AEV H+ + AST+EWAI+K LY T+D A +A+V+A RCLQ+GI+ + I + + ++ +F+ ++E G+ + E +++V P + +H KPWEVL+D Sbjct: 17 IKEISKPTG------EPVVINRNPRNLERLRIAHKPNGYFLEKPGRSFWHKLELSISGRYVTAEVRHFENGPIIGASTSEWAIKKHLYKTSDTPAFVNLARVLAMRCLQSGITEMACNI--NAVAGGKVDKFLKTLEENGVKLQEPERFVAPLPWDAV----RHEKPWEVLED 177
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|929371356|ref|XP_014095591.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Bactrocera oleae]) HSP 1 Score: 129.028 bits (323), Expect = 5.607e-34 Identity = 63/153 (41.18%), Postives = 98/153 (64.05%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDD 209 NRNPRNLE +RI +KPNG+ E+ R +W+KL+L ++ ++ AEV H+ + AST+EWAI+K LY TTD A +A+V+A RCLQ+GI+ + I D + ++ +F+ ++E G+ + E ++Y P + +H KPWEVL+D Sbjct: 31 NRNPRNLERLRIAHKPNGYFLEKPGRSFWHKLELTVSGRYVTAEVRHFQNGPIVGASTSEWAIKKHLYKTTDTPAFVNLARVLAMRCLQSGITEMACNI--DAVAGGKVDKFLKTLEENGVKLQEPERYDAPLPWDAV----RHEKPWEVLED 177
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1098645878|ref|XP_018788620.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Bactrocera latifrons]) HSP 1 Score: 128.642 bits (322), Expect = 1.083e-33 Identity = 63/153 (41.18%), Postives = 97/153 (63.40%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDD 209 NRNPRNLE +RI +KPNG+ E+ R +W+KL+L ++ ++ AEV H+ + AST+EWAI+K LY T D A +A+V+A RCLQ+GI + I D + ++ +F+ ++E G+ + E ++YV P + +H KPWEVL+D Sbjct: 31 NRNPRNLERLRIAHKPNGYFLEKPGRSFWHKLELTVSGRYVTAEVRHFQNGPIVGASTSEWAIKKHLYKTKDTPAFVNLARVLAMRCLQSGIVEMTCNI--DAVAGGKVEKFLKTLEENGVKLQEPERYVAPLPWDAV----RHEKPWEVLED 177
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1321308743|ref|XP_023296413.1| (39S ribosomal protein L18, mitochondrial [Lucilia cuprina]) HSP 1 Score: 127.487 bits (319), Expect = 1.896e-33 Identity = 59/158 (37.34%), Postives = 98/158 (62.03%), Query Frame = 0 Query: 53 THVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDDE 210 ++ NRNPRNLE +RIGYKP+G+ E+ R +W+KL++ I+ ++ AEV H+ V AST EWAI+K L+ T D A +A+V+A RC Q+GI+ + IE + ++ +F+ ++E G+ + E +Y+ +P + KPWE+L+++ Sbjct: 28 VYMTNRNPRNLEKLRIGYKPDGYHLEKPGRSFWHKLEVNISGRYVSAEVKHFENGPVISASTAEWAIKKQLFKTKDTAAFVNLARVLANRCQQSGITEMLCTIEA--VPGGKLHKFLKTVEENGVVLKEAPRYIHPKPW----DAERPEKPWEILEED 179
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1325333197|ref|XP_023348450.1| (39S ribosomal protein L18, mitochondrial-like [Eurytemora affinis]) HSP 1 Score: 125.561 bits (314), Expect = 2.283e-33 Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 0 Query: 47 NDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQR 142 N+++I VRNRNP NLEMM IG KP GFQ + R+YWN L LQI+NQHT AEV HWTG V AST EW IRK LYN TD+ A++ +AK+I+QR Sbjct: 38 NNDIIAPRVRNRNPMNLEMMCIGRKPEGFQLDSAPRKYWNGLTLQISNQHTTAEVRHWTGRVVAKASTREWPIRKQLYNLTDSAAVQTVAKIISQR 133
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|751469761|ref|XP_011190081.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Zeugodacus cucurbitae]) HSP 1 Score: 127.487 bits (319), Expect = 2.540e-33 Identity = 62/154 (40.26%), Postives = 99/154 (64.29%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDDE 210 NRNPRNLE +RI +KP G+ E+ R +W+KL+L ++ ++ AEV H+ + AST+EWAI+K LY TTD A +A+V+A RCLQ+GI+ + I D + ++ +F+ ++E G+ + E ++YV P + ++ KPWEVL+D+ Sbjct: 31 NRNPRNLERLRIAHKPKGYFLEKPGRSFWHKLELTVSGRYVTAEVRHFQNGPIVGASTSEWAIKKHLYKTTDTPAFVNLARVLAMRCLQSGITEMACNI--DAVAGGKVEKFLKTLEENGVRLQEPERYVAPLPWDAV----RNEKPWEVLEDQ 178
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|939632330|ref|XP_014284559.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial isoform X2 [Halyomorpha halys]) HSP 1 Score: 124.79 bits (312), Expect = 1.310e-32 Identity = 58/160 (36.25%), Postives = 96/160 (60.00%), Query Frame = 0 Query: 47 NDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEV 206 N + +V NRNPRNLE + IGYKP+G+ E+ R YW+K+ L++T ++ A V H++G AST EWAI+K+LY+T D A + +++ +RCL+ GI+ ++ + K + F+N + + GI++ E +Y+ +P + + KPWEV Sbjct: 11 NYATVAGYVHNRNPRNLEKLTIGYKPDGWHLEKPGRSYWHKIILEVTGRNVTASVQHFSGTVPVTASTKEWAIKKYLYSTLDKAAYTNLGRILGRRCLETGITEMYCDLASPKGGKVEL--FLNELVKSGISLTEAPRYIHPKP----SDLERPEKPWEV 164 The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 4
BLAST of 39s ribosomal protein mitochondrial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold15_size728074:3390..4762+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold15_size728074-processed-gene-0.1 ID=snap_masked-scaffold15_size728074-processed-gene-0.1|Name=39s ribosomal protein mitochondrial|organism=Tigriopus kingsejongensis|type=gene|length=1373bp|location=Sequence derived from alignment at scaffold15_size728074:3390..4762+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '39s ribosomal protein mitochondrial' has the following synonyms
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