39s ribosomal protein mitochondrial, snap_masked-scaffold15_size728074-processed-gene-0.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Match: EMLSAG00000011569 (supercontig:LSalAtl2s:LSalAtl2s800:159706:160242:-1 gene:EMLSAG00000011569 transcript:EMLSAT00000011569 description:"augustus_masked-LSalAtl2s800-processed-gene-1.10") HSP 1 Score: 162.54 bits (410), Expect = 3.352e-51 Identity = 77/159 (48.43%), Postives = 109/159 (68.55%), Query Frame = 0 Query: 55 VRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLN----RFRKHSKPWEVLDD 209 +RN+NP NLE M+IGYKP GF ++KS YWN+L L+I+ HT A+V HWTG V AST EWAIRK LYN TDA AL + +I +R LQ G+ V LQ+ +++LQ+ERM+ FV +I++ G++ E +Y Q P +L+ + + + KPWEV+D+ Sbjct: 20 IRNKNPLNLEHMKIGYKPQGFLLDKKSVSYWNRLFLEISQNHTTAKVIHWTGRPVAQASTREWAIRKHLYNYTDATALHLLGTIIGERTLQTGVLEVNLQMTQEELQRERMSSFVESIRKTGLSTSESFQYTQRNPFRQLSLASQKPKNNFKPWEVIDE 178
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|41017797|sp|Q9H0U6.1|RM18_HUMAN (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; AltName: Full=Mitochondrial large ribosomal subunit protein uL18m; Flags: Precursor) HSP 1 Score: 105.916 bits (263), Expect = 1.321e-27 Identity = 54/137 (39.42%), Postives = 83/137 (60.58%), Query Frame = 0 Query: 48 DELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184 +E + NRNPRNLE++ + K G++ SRE+W++L + T H +A V H G V AST EWAI+K LY+T + VA E+I +V+AQRCL+AGI+ + Q + + M R +A+ E G+ + E ++ Sbjct: 41 NEAVAPEFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQR 177
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|41017793|sp|Q9CQL5.1|RM18_MOUSE (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; Flags: Precursor) HSP 1 Score: 104.76 bits (260), Expect = 3.578e-27 Identity = 60/173 (34.68%), Postives = 94/173 (54.34%), Query Frame = 0 Query: 12 RLLTRGMALGSGRSEVHTHLGPSPYIDESEKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184 + L+ L G + + T P+ D K +E + NRNPRNLE++ + K G+ +RE+W++L + T H +A V H G V AST EWAI+K LY+T + VA E+I +V+AQRCL+AGI+ + Q + + + R NA+ E G+ + E ++ Sbjct: 9 KCLSVCRKLECGFAALSTSSVPAVQPDVESK----ENEAVAPEFTNRNPRNLELLGVARKERGWATVWPNREFWHRLRVVKTQHHVEAFVEHLNGQVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEASSDSIKRLQNAMTESGVMLREPRR 177
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|115502821|sp|Q3ZBR7.1|RM18_BOVIN (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; Flags: Precursor) HSP 1 Score: 102.064 bits (253), Expect = 4.613e-26 Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 0 Query: 35 PYIDESEKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184 P + P+G +E + NRNPRNLE++ + K G+ SRE+W++L + + H +A V H G V AST EWAI+K LY+T VA E++ +V+AQRCL+AGI+ + Q + + M R + E G+ + E ++ Sbjct: 30 PVVKPEADPVG--NEAVAPEFTNRNPRNLELLAVARKERGWGTVWPSREFWHRLRVIRSQHHIEALVEHRNGQVVVSASTREWAIKKHLYSTKSVVACESVGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQIGMIEGGVVLQEPRR 177
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|465842|sp|P34378.1|RM18_CAEEL (RecName: Full=39S ribosomal protein L18, mitochondrial) HSP 1 Score: 77.7962 bits (190), Expect = 6.917e-17 Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWE--RKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQK-ERMTRFVNAIKEQGITIGE 181 NRNPRN E+M G+Q+E R +R Y K++L H + + H+ V AST E +I LY+ TD A I +V+A RCLQ+GI K+ ++K + T F A++E+G+T+ E Sbjct: 11 NRNPRNNELMGRQAPNTGYQFEKDRAARSYIYKVELVEGKSHREGRLVHYQDGVVISASTKEPSIASQLYSKTDTSAALNIGRVLALRCLQSGIHFAMPGATKEAIEKSQHQTHFFKALEEEGLTLKE 138
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|768411338|ref|XP_011563181.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Plutella xylostella]) HSP 1 Score: 124.79 bits (312), Expect = 1.565e-32 Identity = 65/152 (42.76%), Postives = 93/152 (61.18%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLD 208 NRNPRNLE MRI KP G+ ++ R YW+KL L + + KA++ H+ V A +TEWAIRK LY+T D A + +++AQRCL++GI+ V IE + K RM F+N +K+ GI + E ++YV+ P R + KPWEV + Sbjct: 27 NRNPRNLERMRIARKPAGYHLDKPGRSYWHKLVLTTSQRSVKAQIVHFLNGPVIEAKSTEWAIRKQLYSTIDTSAYINLGQILAQRCLESGITEVSCDIEGANAGKVRM--FLNEVKKSGIRLKEPEQYVKPNPWDRT----RPEKPWEVTE 172
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|939632328|ref|XP_014284550.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial isoform X1 [Halyomorpha halys]) HSP 1 Score: 124.405 bits (311), Expect = 2.849e-32 Identity = 58/160 (36.25%), Postives = 96/160 (60.00%), Query Frame = 0 Query: 47 NDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEV 206 N + +V NRNPRNLE + IGYKP+G+ E+ R YW+K+ L++T ++ A V H++G AST EWAI+K+LY+T D A + +++ +RCL+ GI+ ++ + K + F+N + + GI++ E +Y+ +P + + KPWEV Sbjct: 22 NYATVAGYVHNRNPRNLEKLTIGYKPDGWHLEKPGRSYWHKIILEVTGRNVTASVQHFSGTVPVTASTKEWAIKKYLYSTLDKAAYTNLGRILGRRCLETGITEMYCDLASPKGGKVEL--FLNELVKSGISLTEAPRYIHPKP----SDLERPEKPWEV 175
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1228011069|ref|XP_021937463.1| (39S ribosomal protein L18, mitochondrial isoform X4 [Zootermopsis nevadensis] >gi|646698746|gb|KDR09758.1| 39S ribosomal protein L18, mitochondrial [Zootermopsis nevadensis]) HSP 1 Score: 123.635 bits (309), Expect = 7.324e-32 Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLD 208 NRNPRNLE +RI ++P G+ E RE+W+KL L+ + H A++ H++GL V AST EWA++KFLY+T D A +A+V AQRCL++GIS V ++ ++ F+ ++E G+T+ E ++ +PH R + KPWEV + Sbjct: 44 NRNPRNLERLRIAWRPTGYHLEVPGREFWHKLLLEQSPHHVTAKIVHYSGLEVVTASTKEWAVKKFLYSTKDTSAFMNLARVFAQRCLESGISEVCCDLK--PYPGGKVESFLFCMEEGGMTLAEPPRF---KPH-RPWHVDRPEKPWEVTE 189
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1228011071|ref|XP_021937464.1| (39S ribosomal protein L18, mitochondrial isoform X5 [Zootermopsis nevadensis] >gi|1228011073|ref|XP_021937465.1| 39S ribosomal protein L18, mitochondrial isoform X5 [Zootermopsis nevadensis] >gi|1228011075|ref|XP_021937466.1| 39S ribosomal protein L18, mitochondrial isoform X5 [Zootermopsis nevadensis]) HSP 1 Score: 123.635 bits (309), Expect = 7.804e-32 Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLD 208 NRNPRNLE +RI ++P G+ E RE+W+KL L+ + H A++ H++GL V AST EWA++KFLY+T D A +A+V AQRCL++GIS V ++ ++ F+ ++E G+T+ E ++ +PH R + KPWEV + Sbjct: 42 NRNPRNLERLRIAWRPTGYHLEVPGREFWHKLLLEQSPHHVTAKIVHYSGLEVVTASTKEWAVKKFLYSTKDTSAFMNLARVFAQRCLESGISEVCCDLK--PYPGGKVESFLFCMEEGGMTLAEPPRF---KPH-RPWHVDRPEKPWEVTE 187
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|195119764|ref|XP_002004399.1| (uncharacterized protein Dmoj_GI19636 [Drosophila mojavensis] >gi|193909467|gb|EDW08334.1| uncharacterized protein Dmoj_GI19636 [Drosophila mojavensis]) HSP 1 Score: 123.635 bits (309), Expect = 7.851e-32 Identity = 60/157 (38.22%), Postives = 95/157 (60.51%), Query Frame = 0 Query: 54 HVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDDE 210 +V NRNPRNLE +RIGYKP G+ E+ R YW+ L++ + ++ A+V H+ + AST+EWAI++ LY T D A + +V+AQRCLQAGI+ + + + ++ + + A++E G++ E + T P + FR H KPWEV + + Sbjct: 29 YVVNRNPRNLERLRIGYKPTGYHLEKPGRSYWHTLEINTSGRYVSADVKHFENGTILSASTSEWAIKQQLYKTNDTPAFVNLGRVLAQRCLQAGITEMTCNV--TAVPGSKLEKLLKAVQENGVSFQEPARLPLTHP---WDAFR-HEKPWEVTEQQ 179
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1228011067|ref|XP_021937462.1| (39S ribosomal protein L18, mitochondrial isoform X3 [Zootermopsis nevadensis]) HSP 1 Score: 123.635 bits (309), Expect = 9.009e-32 Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLD 208 NRNPRNLE +RI ++P G+ E RE+W+KL L+ + H A++ H++GL V AST EWA++KFLY+T D A +A+V AQRCL++GIS V ++ ++ F+ ++E G+T+ E ++ +PH R + KPWEV + Sbjct: 50 NRNPRNLERLRIAWRPTGYHLEVPGREFWHKLLLEQSPHHVTAKIVHYSGLEVVTASTKEWAVKKFLYSTKDTSAFMNLARVFAQRCLESGISEVCCDLK--PYPGGKVESFLFCMEEGGMTLAEPPRF---KPH-RPWHVDRPEKPWEVTE 195
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1060249631|ref|XP_017867000.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Drosophila arizonae]) HSP 1 Score: 123.25 bits (308), Expect = 9.130e-32 Identity = 60/157 (38.22%), Postives = 95/157 (60.51%), Query Frame = 0 Query: 54 HVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDDE 210 +V NRNPRNLE +RIGYKP G+ E+ R YW+ L++ + ++ A+V H+ + AST+EWAI++ LY T D A + +V+AQRCLQAGI+ + + + ++ + + A++E G++ E + T P + FR H KPWEV + + Sbjct: 29 YVVNRNPRNLERLRIGYKPTGYHLEKPGRSYWHTLEINTSGRYVSADVKHFENGTILSASTSEWAIKQQLYKTNDTPAFVNLGRVLAQRCLQAGITEMTCNV--TAVPGSKLEKLLKAVQENGVSFQEPARLPLTHP---WDAFR-HEKPWEVTEQQ 179
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1228011063|ref|XP_021937460.1| (39S ribosomal protein L18, mitochondrial isoform X1 [Zootermopsis nevadensis]) HSP 1 Score: 123.635 bits (309), Expect = 9.406e-32 Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLD 208 NRNPRNLE +RI ++P G+ E RE+W+KL L+ + H A++ H++GL V AST EWA++KFLY+T D A +A+V AQRCL++GIS V ++ ++ F+ ++E G+T+ E ++ +PH R + KPWEV + Sbjct: 50 NRNPRNLERLRIAWRPTGYHLEVPGREFWHKLLLEQSPHHVTAKIVHYSGLEVVTASTKEWAVKKFLYSTKDTSAFMNLARVFAQRCLESGISEVCCDLK--PYPGGKVESFLFCMEEGGMTLAEPPRF---KPH-RPWHVDRPEKPWEVTE 195
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1059424845|ref|XP_017785156.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Nicrophorus vespilloides]) HSP 1 Score: 122.479 bits (306), Expect = 1.019e-31 Identity = 58/139 (41.73%), Postives = 90/139 (64.75%), Query Frame = 0 Query: 47 NDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKY 185 +++ I+ + NRNPRNLE MRIGYKP+G+ E R YW+KL+L ++ ++ A V H+ V AST EWAI+K LY DA A + + +V+AQRC++ G++ + IE + ++ F+NA++E GIT+ E +Y Sbjct: 13 SNDAIKPMLTNRNPRNLERMRIGYKPDGYHLENDVRNYWHKLNLDVSARYVSASVHHFKNGEVLSASTKEWAIKKQLYRNNDAAAFKNLGRVLAQRCMETGLTELHSDIETKN-PDGKVALFLNALQESGITLKEPIQY 150
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|507925500|ref|XP_004674016.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Condylura cristata]) HSP 1 Score: 122.865 bits (307), Expect = 1.056e-31 Identity = 66/164 (40.24%), Postives = 98/164 (59.76%), Query Frame = 0 Query: 21 GSGRSEVHTHLGPSPYIDESEKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184 G G + V T P+P + S PLG +E + NRNPRNLE++ + K G+ SRE+W++L + T H +A V HW+G V AST EWAI+K LY+T + VA E+I +V+A+RCLQAGI+ + Q + + + RF NA+ E G+ + E ++ Sbjct: 18 GLGVAAVSTRAKPAPKPEAS--PLG--NEAVAPEFTNRNPRNLELLGVARKERGWGTVWPSREFWHRLRVTRTQHHVEAVVEHWSGQVVVSASTREWAIKKHLYSTKNVVACESIGRVLAERCLQAGINFMVYQPTPWEAASDSIKRFQNAMTEGGVVLQEPRR 177 The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 4
BLAST of 39s ribosomal protein mitochondrial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold15_size728074:3390..4762+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold15_size728074-processed-gene-0.1 ID=snap_masked-scaffold15_size728074-processed-gene-0.1|Name=39s ribosomal protein mitochondrial|organism=Tigriopus kingsejongensis|type=gene|length=1373bp|location=Sequence derived from alignment at scaffold15_size728074:3390..4762+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '39s ribosomal protein mitochondrial' has the following synonyms
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