39s ribosomal protein mitochondrial, snap_masked-scaffold15_size728074-processed-gene-0.1 (gene) Tigriopus kingsejongensis

Overview
Name39s ribosomal protein mitochondrial
Unique Namesnap_masked-scaffold15_size728074-processed-gene-0.1
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Match: EMLSAG00000011569 (supercontig:LSalAtl2s:LSalAtl2s800:159706:160242:-1 gene:EMLSAG00000011569 transcript:EMLSAT00000011569 description:"augustus_masked-LSalAtl2s800-processed-gene-1.10")

HSP 1 Score: 162.54 bits (410), Expect = 3.352e-51
Identity = 77/159 (48.43%), Postives = 109/159 (68.55%), Query Frame = 0
Query:   55 VRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLN----RFRKHSKPWEVLDD 209
            +RN+NP NLE M+IGYKP GF  ++KS  YWN+L L+I+  HT A+V HWTG  V  AST EWAIRK LYN TDA AL  +  +I +R LQ G+  V LQ+ +++LQ+ERM+ FV +I++ G++  E  +Y Q  P  +L+    + + + KPWEV+D+
Sbjct:   20 IRNKNPLNLEHMKIGYKPQGFLLDKKSVSYWNRLFLEISQNHTTAKVIHWTGRPVAQASTREWAIRKHLYNYTDATALHLLGTIIGERTLQTGVLEVNLQMTQEELQRERMSSFVESIRKTGLSTSESFQYTQRNPFRQLSLASQKPKNNFKPWEVIDE 178          
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|41017797|sp|Q9H0U6.1|RM18_HUMAN (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; AltName: Full=Mitochondrial large ribosomal subunit protein uL18m; Flags: Precursor)

HSP 1 Score: 105.916 bits (263), Expect = 1.321e-27
Identity = 54/137 (39.42%), Postives = 83/137 (60.58%), Query Frame = 0
Query:   48 DELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184
            +E +     NRNPRNLE++ +  K  G++    SRE+W++L +  T  H +A V H  G  V  AST EWAI+K LY+T + VA E+I +V+AQRCL+AGI+ +  Q    +   + M R  +A+ E G+ + E ++
Sbjct:   41 NEAVAPEFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQR 177          
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|41017793|sp|Q9CQL5.1|RM18_MOUSE (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; Flags: Precursor)

HSP 1 Score: 104.76 bits (260), Expect = 3.578e-27
Identity = 60/173 (34.68%), Postives = 94/173 (54.34%), Query Frame = 0
Query:   12 RLLTRGMALGSGRSEVHTHLGPSPYIDESEKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184
            + L+    L  G + + T   P+   D   K     +E +     NRNPRNLE++ +  K  G+     +RE+W++L +  T  H +A V H  G  V  AST EWAI+K LY+T + VA E+I +V+AQRCL+AGI+ +  Q    +   + + R  NA+ E G+ + E ++
Sbjct:    9 KCLSVCRKLECGFAALSTSSVPAVQPDVESK----ENEAVAPEFTNRNPRNLELLGVARKERGWATVWPNREFWHRLRVVKTQHHVEAFVEHLNGQVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEASSDSIKRLQNAMTESGVMLREPRR 177          
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|115502821|sp|Q3ZBR7.1|RM18_BOVIN (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; Flags: Precursor)

HSP 1 Score: 102.064 bits (253), Expect = 4.613e-26
Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 0
Query:   35 PYIDESEKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184
            P +     P+G  +E +     NRNPRNLE++ +  K  G+     SRE+W++L +  +  H +A V H  G  V  AST EWAI+K LY+T   VA E++ +V+AQRCL+AGI+ +  Q    +   + M R    + E G+ + E ++
Sbjct:   30 PVVKPEADPVG--NEAVAPEFTNRNPRNLELLAVARKERGWGTVWPSREFWHRLRVIRSQHHIEALVEHRNGQVVVSASTREWAIKKHLYSTKSVVACESVGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQIGMIEGGVVLQEPRR 177          
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|465842|sp|P34378.1|RM18_CAEEL (RecName: Full=39S ribosomal protein L18, mitochondrial)

HSP 1 Score: 77.7962 bits (190), Expect = 6.917e-17
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 0
Query:   57 NRNPRNLEMMRIGYKPNGFQWE--RKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQK-ERMTRFVNAIKEQGITIGE 181
            NRNPRN E+M       G+Q+E  R +R Y  K++L     H +  + H+    V  AST E +I   LY+ TD  A   I +V+A RCLQ+GI        K+ ++K +  T F  A++E+G+T+ E
Sbjct:   11 NRNPRNNELMGRQAPNTGYQFEKDRAARSYIYKVELVEGKSHREGRLVHYQDGVVISASTKEPSIASQLYSKTDTSAALNIGRVLALRCLQSGIHFAMPGATKEAIEKSQHQTHFFKALEEEGLTLKE 138          
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1228011065|ref|XP_021937461.1| (39S ribosomal protein L18, mitochondrial isoform X2 [Zootermopsis nevadensis])

HSP 1 Score: 123.25 bits (308), Expect = 1.186e-31
Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 0
Query:   57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLD 208
            NRNPRNLE +RI ++P G+  E   RE+W+KL L+ +  H  A++ H++GL V  AST EWA++KFLY+T D  A   +A+V AQRCL++GIS V   ++       ++  F+  ++E G+T+ E  ++   +PH R     +  KPWEV +
Sbjct:   55 NRNPRNLERLRIAWRPTGYHLEVPGREFWHKLLLEQSPHHVTAKIVHYSGLEVVTASTKEWAVKKFLYSTKDTSAFMNLARVFAQRCLESGISEVCCDLK--PYPGGKVESFLFCMEEGGMTLAEPPRF---KPH-RPWHVDRPEKPWEVTE 200          
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1062677994|ref|XP_017960929.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Drosophila navojoa])

HSP 1 Score: 122.094 bits (305), Expect = 3.187e-31
Identity = 59/157 (37.58%), Postives = 95/157 (60.51%), Query Frame = 0
Query:   54 HVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDDE 210
            +V NRNPRNLE +RIGYKP G+  E+  R YW+ L++  + ++  A+V H+    +  AST+EWAI++ LY T D  A   + +V+AQRCLQAGI+ +   +    +   ++ + + A++E G++  E  +   T P    + +R H KPWEV + +
Sbjct:   29 YVVNRNPRNLERLRIGYKPTGYHLEKPGRSYWHTLEVNTSGRYVSADVKHFENGTILSASTSEWAIKQQLYKTNDTPAFVNLGRVLAQRCLQAGITEMTCNVPA--VPGSKLEKLLKAVQENGVSFQEPARLPLTHP---WDAYR-HEKPWEVTEQQ 179          
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1279725050|ref|XP_022907131.1| (39S ribosomal protein L18, mitochondrial [Onthophagus taurus])

HSP 1 Score: 121.324 bits (303), Expect = 4.262e-31
Identity = 58/150 (38.67%), Postives = 93/150 (62.00%), Query Frame = 0
Query:   57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEV 206
            NRNPRNLE +RIGYKP+G+  ++K R +W+KL++ +  +H  A ++H+T   V  A+T EWA++K LY  TD  A   +A+V+AQRCL+ GI   +   E  D Q E++  F+  + + G+ + E  +Y  ++P  +     +  KPWE+
Sbjct:   33 NRNPRNLEKLRIGYKPDGYHVDKKGRNFWHKLEISVNRRHITATISHFTNGVVLKATTKEWALQKQLYGLTDYSAYVNLARVLAQRCLECGIIEFYCDYEPRDNQ-EKLAGFLKTLSDNGVVLKEPDQYKPSKPWDQ----HRPEKPWEI 177          
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|907725709|ref|XP_013113762.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Stomoxys calcitrans])

HSP 1 Score: 120.939 bits (302), Expect = 6.469e-31
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 0
Query:   54 HVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDDE 210
            ++ NRNPRNLE +RI YKP+G+  E+  R +W+KL++ ++ ++  AEV H+    V  AST+EWAI+K L+ T D  A   +A+V+A RC Q+GI+ +   IE   +   ++ +F+  ++E GIT+ E  +Y       +     +  KPWEVL+++
Sbjct:   29 YMTNRNPRNLEKLRIAYKPDGYHLEKPGRSFWHKLEVNVSGRYVTAEVKHFQNGPVVAASTSEWAIKKQLFKTKDTTAFINLARVLANRCQQSGITEMMCNIEA--VPGGKLDKFLKTVEENGITLKELPRYNNP----KAWDAERPEKPWEVLEED 179          
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1060219925|ref|XP_017839416.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Drosophila busckii] >gi|924556215|gb|ALC41488.1| mRpL18 [Drosophila busckii])

HSP 1 Score: 120.939 bits (302), Expect = 7.076e-31
Identity = 58/155 (37.42%), Postives = 94/155 (60.65%), Query Frame = 0
Query:   54 HVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLD 208
            +V NRNPRNLE +RI YKP G+  E+  R YW+ L++  + ++  A+V H+    +  AST+EWAI++ LY T D  A   + +V+AQRCLQAGI+ +   I+   +   ++ + + A++  G++  E  +   T+P    + +R H KPWEV +
Sbjct:   29 YVINRNPRNLERLRIAYKPGGYHLEKPGRSYWHTLEITTSGRYVSADVKHYENGNILSASTSEWAIKQQLYKTNDTSAFVNLGRVLAQRCLQAGITEMTCNIK--PVPGSKLEKLLQAVQTNGVSFEEPTRLPNTQP---WDAYR-HEKPWEVFE 177          
The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000115693.352e-5148.43supercontig:LSalAtl2s:LSalAtl2s800:159706:160242:-... [more]
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
gi|41017797|sp|Q9H0U6.1|RM18_HUMAN1.321e-2739.42RecName: Full=39S ribosomal protein L18, mitochond... [more]
gi|41017793|sp|Q9CQL5.1|RM18_MOUSE3.578e-2734.68RecName: Full=39S ribosomal protein L18, mitochond... [more]
gi|115502821|sp|Q3ZBR7.1|RM18_BOVIN4.613e-2636.00RecName: Full=39S ribosomal protein L18, mitochond... [more]
gi|465842|sp|P34378.1|RM18_CAEEL6.917e-1736.72RecName: Full=39S ribosomal protein L18, mitochond... [more]
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BLAST of 39s ribosomal protein mitochondrial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1228011065|ref|XP_021937461.1|1.186e-3140.7939S ribosomal protein L18, mitochondrial isoform X... [more]
gi|1062677994|ref|XP_017960929.1|3.187e-3137.58PREDICTED: 39S ribosomal protein L18, mitochondria... [more]
gi|1279725050|ref|XP_022907131.1|4.262e-3138.6739S ribosomal protein L18, mitochondrial [Onthopha... [more]
gi|907725709|ref|XP_013113762.1|6.469e-3137.58PREDICTED: 39S ribosomal protein L18, mitochondria... [more]
gi|1060219925|ref|XP_017839416.1|7.076e-3137.42PREDICTED: 39S ribosomal protein L18, mitochondria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold15_size728074supercontigscaffold15_size728074:3390..4762 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold15_size728074-processed-gene-0.1-mRNA-1snap_masked-scaffold15_size728074-processed-gene-0.1-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold15_size728074:3390..4762+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold15_size728074-processed-gene-0.1 ID=snap_masked-scaffold15_size728074-processed-gene-0.1|Name=39s ribosomal protein mitochondrial|organism=Tigriopus kingsejongensis|type=gene|length=1373bp|location=Sequence derived from alignment at scaffold15_size728074:3390..4762+ (Tigriopus kingsejongensis)
GTTTGTGGAGGATCTTGGCCCCATTTCCCCAATCCCCAGCATGTTCGCCG TCGGACCCGTTCGGGCGTGTCCCCGCCTGTTGACCCGAGGTATGGCCCTT GGGAGTGGTCGATCAGAGGTCCACACCCACCTGGGCCCCTCCCCTTACAT TGATGAGTCGGAGAAGCCTTTGGGTGAGATGAGTTTATGGTTCCACCAGG CGTGGGACGAGGTGTTAATCTGAGTGGGCGCAGTACTTATCCCCCAATCT TGCTCCAGGACCCAACGACGAACTGATCCAGACCCACGTGAGGAATCGCA ATCCTCGGAACCTGGAGATGATGCGCATCGGGTACAAGCCGAATGGCTTC CAATGGGAGAGAAAATCGCGCGAATACTGGAACAAACTGGATCTTCAGAT CACCAACCAGCACACCAAAGCCGAGGTGGCTCACTGGACGGGCTTGAGAG TGTGCCACGCATCCACCACGGAATGGGCCATACGGAAATTCTTGTACAAC ACCACCGATGCCGTCGCCCTGGAGGCCATTGCCAAGGTGAGCAGTCAAAC CAATGTCCTTGATTCAAACCGCCAAATACTGGCCCAGCTCTTCATGCCAT CGATGACCATGCAGAGCTCTATCGCCCTGTGAAACTCGCTCGATCACGGC CAAGTCACCCAGAATGGAATCAAAGGCCTCGATAACACTCTGACCTGAGT GAACCTTGTTAGCAACTCGCCGTTTCCTGGCGTGAGCCAAGGTTTGAATT TGTACCCATTGCGTCTTATACATTTCGTCCTCATGTTGTGTTACTAGAAG CAAATTCTTTCGCTTATTACAACTGCTTACATGCACCTGAACACATATAC ATCTCTGACCGGTTCAAAGTCGCTTGGACCATTTTTTAACCGATATTCAA AAGCAGCCCCGTGCTCAAATTGGTCTTTTGGCTGCCATTTTTTATAATGG TTTGGCTGAAGCCAGATCAACATCTCTTCACGGGATATGGTCAGCACCTT CGGTTTTATTAAAAAAAACCTGTCCAAGGGCGCCATGAATGCATGTCTTT TTTTTGGGGGGGGAGGGTCCGAGCTATTTCTAATCGTTCTCATTGCCATA TATTGTAGGTGATTGCCCAGCGATGTCTCCAGGCCGGGATTAGTCATGTG TTCCTCCAAATCGAGAAGGATGACCTGCAGAAGGAACGCATGACCCGATT TGTGAATGCCATCAAAGAGCAAGGCATCACCATTGGAGAGGGGAAAAAGT ACGTTCAAACCGAGCCCCACGTGAGGCTCAACCGATTTAGGAAACACTCC AAGCCTTGGGAAGTGTTGGATGACGAGTAATTTGGGTTGCCTTGTGCTAA ATGTAATAAAATATTCACTTTGC
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Synonyms
The feature '39s ribosomal protein mitochondrial' has the following synonyms
Synonym
Tk08837
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