39s ribosomal protein mitochondrial, snap_masked-scaffold15_size728074-processed-gene-0.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Match: EMLSAG00000011569 (supercontig:LSalAtl2s:LSalAtl2s800:159706:160242:-1 gene:EMLSAG00000011569 transcript:EMLSAT00000011569 description:"augustus_masked-LSalAtl2s800-processed-gene-1.10") HSP 1 Score: 162.54 bits (410), Expect = 3.352e-51 Identity = 77/159 (48.43%), Postives = 109/159 (68.55%), Query Frame = 0 Query: 55 VRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLN----RFRKHSKPWEVLDD 209 +RN+NP NLE M+IGYKP GF ++KS YWN+L L+I+ HT A+V HWTG V AST EWAIRK LYN TDA AL + +I +R LQ G+ V LQ+ +++LQ+ERM+ FV +I++ G++ E +Y Q P +L+ + + + KPWEV+D+ Sbjct: 20 IRNKNPLNLEHMKIGYKPQGFLLDKKSVSYWNRLFLEISQNHTTAKVIHWTGRPVAQASTREWAIRKHLYNYTDATALHLLGTIIGERTLQTGVLEVNLQMTQEELQRERMSSFVESIRKTGLSTSESFQYTQRNPFRQLSLASQKPKNNFKPWEVIDE 178
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|41017797|sp|Q9H0U6.1|RM18_HUMAN (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; AltName: Full=Mitochondrial large ribosomal subunit protein uL18m; Flags: Precursor) HSP 1 Score: 105.916 bits (263), Expect = 1.321e-27 Identity = 54/137 (39.42%), Postives = 83/137 (60.58%), Query Frame = 0 Query: 48 DELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184 +E + NRNPRNLE++ + K G++ SRE+W++L + T H +A V H G V AST EWAI+K LY+T + VA E+I +V+AQRCL+AGI+ + Q + + M R +A+ E G+ + E ++ Sbjct: 41 NEAVAPEFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQR 177
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|41017793|sp|Q9CQL5.1|RM18_MOUSE (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; Flags: Precursor) HSP 1 Score: 104.76 bits (260), Expect = 3.578e-27 Identity = 60/173 (34.68%), Postives = 94/173 (54.34%), Query Frame = 0 Query: 12 RLLTRGMALGSGRSEVHTHLGPSPYIDESEKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184 + L+ L G + + T P+ D K +E + NRNPRNLE++ + K G+ +RE+W++L + T H +A V H G V AST EWAI+K LY+T + VA E+I +V+AQRCL+AGI+ + Q + + + R NA+ E G+ + E ++ Sbjct: 9 KCLSVCRKLECGFAALSTSSVPAVQPDVESK----ENEAVAPEFTNRNPRNLELLGVARKERGWATVWPNREFWHRLRVVKTQHHVEAFVEHLNGQVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEASSDSIKRLQNAMTESGVMLREPRR 177
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|115502821|sp|Q3ZBR7.1|RM18_BOVIN (RecName: Full=39S ribosomal protein L18, mitochondrial; Short=L18mt; Short=MRP-L18; Flags: Precursor) HSP 1 Score: 102.064 bits (253), Expect = 4.613e-26 Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 0 Query: 35 PYIDESEKPLGPNDELIQTHVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKK 184 P + P+G +E + NRNPRNLE++ + K G+ SRE+W++L + + H +A V H G V AST EWAI+K LY+T VA E++ +V+AQRCL+AGI+ + Q + + M R + E G+ + E ++ Sbjct: 30 PVVKPEADPVG--NEAVAPEFTNRNPRNLELLAVARKERGWGTVWPSREFWHRLRVIRSQHHIEALVEHRNGQVVVSASTREWAIKKHLYSTKSVVACESVGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQIGMIEGGVVLQEPRR 177
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|465842|sp|P34378.1|RM18_CAEEL (RecName: Full=39S ribosomal protein L18, mitochondrial) HSP 1 Score: 77.7962 bits (190), Expect = 6.917e-17 Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWE--RKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQK-ERMTRFVNAIKEQGITIGE 181 NRNPRN E+M G+Q+E R +R Y K++L H + + H+ V AST E +I LY+ TD A I +V+A RCLQ+GI K+ ++K + T F A++E+G+T+ E Sbjct: 11 NRNPRNNELMGRQAPNTGYQFEKDRAARSYIYKVELVEGKSHREGRLVHYQDGVVISASTKEPSIASQLYSKTDTSAALNIGRVLALRCLQSGIHFAMPGATKEAIEKSQHQTHFFKALEEEGLTLKE 138
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1228011065|ref|XP_021937461.1| (39S ribosomal protein L18, mitochondrial isoform X2 [Zootermopsis nevadensis]) HSP 1 Score: 123.25 bits (308), Expect = 1.186e-31 Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLD 208 NRNPRNLE +RI ++P G+ E RE+W+KL L+ + H A++ H++GL V AST EWA++KFLY+T D A +A+V AQRCL++GIS V ++ ++ F+ ++E G+T+ E ++ +PH R + KPWEV + Sbjct: 55 NRNPRNLERLRIAWRPTGYHLEVPGREFWHKLLLEQSPHHVTAKIVHYSGLEVVTASTKEWAVKKFLYSTKDTSAFMNLARVFAQRCLESGISEVCCDLK--PYPGGKVESFLFCMEEGGMTLAEPPRF---KPH-RPWHVDRPEKPWEVTE 200
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1062677994|ref|XP_017960929.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Drosophila navojoa]) HSP 1 Score: 122.094 bits (305), Expect = 3.187e-31 Identity = 59/157 (37.58%), Postives = 95/157 (60.51%), Query Frame = 0 Query: 54 HVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDDE 210 +V NRNPRNLE +RIGYKP G+ E+ R YW+ L++ + ++ A+V H+ + AST+EWAI++ LY T D A + +V+AQRCLQAGI+ + + + ++ + + A++E G++ E + T P + +R H KPWEV + + Sbjct: 29 YVVNRNPRNLERLRIGYKPTGYHLEKPGRSYWHTLEVNTSGRYVSADVKHFENGTILSASTSEWAIKQQLYKTNDTPAFVNLGRVLAQRCLQAGITEMTCNVPA--VPGSKLEKLLKAVQENGVSFQEPARLPLTHP---WDAYR-HEKPWEVTEQQ 179
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1279725050|ref|XP_022907131.1| (39S ribosomal protein L18, mitochondrial [Onthophagus taurus]) HSP 1 Score: 121.324 bits (303), Expect = 4.262e-31 Identity = 58/150 (38.67%), Postives = 93/150 (62.00%), Query Frame = 0 Query: 57 NRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEV 206 NRNPRNLE +RIGYKP+G+ ++K R +W+KL++ + +H A ++H+T V A+T EWA++K LY TD A +A+V+AQRCL+ GI + E D Q E++ F+ + + G+ + E +Y ++P + + KPWE+ Sbjct: 33 NRNPRNLEKLRIGYKPDGYHVDKKGRNFWHKLEISVNRRHITATISHFTNGVVLKATTKEWALQKQLYGLTDYSAYVNLARVLAQRCLECGIIEFYCDYEPRDNQ-EKLAGFLKTLSDNGVVLKEPDQYKPSKPWDQ----HRPEKPWEI 177
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|907725709|ref|XP_013113762.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Stomoxys calcitrans]) HSP 1 Score: 120.939 bits (302), Expect = 6.469e-31 Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 0 Query: 54 HVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLDDE 210 ++ NRNPRNLE +RI YKP+G+ E+ R +W+KL++ ++ ++ AEV H+ V AST+EWAI+K L+ T D A +A+V+A RC Q+GI+ + IE + ++ +F+ ++E GIT+ E +Y + + KPWEVL+++ Sbjct: 29 YMTNRNPRNLEKLRIAYKPDGYHLEKPGRSFWHKLEVNVSGRYVTAEVKHFQNGPVVAASTSEWAIKKQLFKTKDTTAFINLARVLANRCQQSGITEMMCNIEA--VPGGKLDKFLKTVEENGITLKELPRYNNP----KAWDAERPEKPWEVLEED 179
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1060219925|ref|XP_017839416.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Drosophila busckii] >gi|924556215|gb|ALC41488.1| mRpL18 [Drosophila busckii]) HSP 1 Score: 120.939 bits (302), Expect = 7.076e-31 Identity = 58/155 (37.42%), Postives = 94/155 (60.65%), Query Frame = 0 Query: 54 HVRNRNPRNLEMMRIGYKPNGFQWERKSREYWNKLDLQITNQHTKAEVAHWTGLRVCHASTTEWAIRKFLYNTTDAVALEAIAKVIAQRCLQAGISHVFLQIEKDDLQKERMTRFVNAIKEQGITIGEGKKYVQTEPHVRLNRFRKHSKPWEVLD 208 +V NRNPRNLE +RI YKP G+ E+ R YW+ L++ + ++ A+V H+ + AST+EWAI++ LY T D A + +V+AQRCLQAGI+ + I+ + ++ + + A++ G++ E + T+P + +R H KPWEV + Sbjct: 29 YVINRNPRNLERLRIAYKPGGYHLEKPGRSYWHTLEITTSGRYVSADVKHYENGNILSASTSEWAIKQQLYKTNDTSAFVNLGRVLAQRCLQAGITEMTCNIK--PVPGSKLEKLLQAVQTNGVSFEEPTRLPNTQP---WDAYR-HEKPWEVFE 177 The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 4
BLAST of 39s ribosomal protein mitochondrial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold15_size728074:3390..4762+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold15_size728074-processed-gene-0.1 ID=snap_masked-scaffold15_size728074-processed-gene-0.1|Name=39s ribosomal protein mitochondrial|organism=Tigriopus kingsejongensis|type=gene|length=1373bp|location=Sequence derived from alignment at scaffold15_size728074:3390..4762+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '39s ribosomal protein mitochondrial' has the following synonyms
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