hypothetical protein DAPPUDRAFT_215551, snap_masked-scaffold1912_size25034-processed-gene-0.4 (gene) Tigriopus kingsejongensis

Overview
Namehypothetical protein DAPPUDRAFT_215551
Unique Namesnap_masked-scaffold1912_size25034-processed-gene-0.4
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of hypothetical protein DAPPUDRAFT_215551 vs. L. salmonis genes
Match: EMLSAG00000001138 (supercontig:LSalAtl2s:LSalAtl2s118:399399:402184:1 gene:EMLSAG00000001138 transcript:EMLSAT00000001138 description:"maker-LSalAtl2s118-augustus-gene-4.15")

HSP 1 Score: 66.6254 bits (161), Expect = 9.489e-15
Identity = 38/64 (59.38%), Postives = 43/64 (67.19%), Query Frame = 0 
Query:   59 AVVNQVLDELGLQLNQDLAGMAVPNGSLAVATPGGKQAVPSGAVGGATDADADLQARLDDLRRE 122
            A+V+QVLDELGLQLN  L    VP G   +A PG K+   + A GG  DADADLQ RLD LRRE
Sbjct:  162 AIVSQVLDELGLQLNDQLKD--VPAGXSTLAAPGAKEK-KAVAAGGVEDADADLQERLDALRRE 222
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BLAST of hypothetical protein DAPPUDRAFT_215551 vs. SwissProt
Match: gi|73917738|sp|Q7ZW25.1|CHM2A_DANRE (RecName: Full=Charged multivesicular body protein 2a; AltName: Full=Chromatin-modifying protein 2a; Short=CHMP2a)

HSP 1 Score: 52.7582 bits (125), Expect = 2.975e-8
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 0 
Query:   51 EDDEEESDAVVNQVLDELGLQLNQDLAGMAVPNGSLAVATPGGKQAVPSGAVGGATDADADLQARLDDLRR 121
            EDDEEESDAVV+QVLDELGL L+ +L+ +    GSL+VA   GK+A P   +    DADADL+ RL++LRR
Sbjct:  154 EDDEEESDAVVSQVLDELGLTLSDELSNLPATGGSLSVA--AGKKAEPQPTLA---DADADLEERLNNLRR 219
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BLAST of hypothetical protein DAPPUDRAFT_215551 vs. SwissProt
Match: gi|75206464|sp|Q9SKI2.2|VPS2A_ARATH (RecName: Full=Vacuolar protein sorting-associated protein 2 homolog 1; Short=AtVPS2-1; AltName: Full=Charged multivesicular body protein 2 homolog 1; AltName: Full=ESCRT-III complex subunit VPS2 homolog 1; AltName: Full=SNF7-like protein)

HSP 1 Score: 52.7582 bits (125), Expect = 3.390e-8
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 0 
Query:   60 VVNQVLDELGLQLNQDLAGMAVPNGSLAVATPGGKQAVPSGAVGGATDA---DADLQARLDDLRR 121
            +V+QVLDE+G+ +NQ+L     P+G  AVA P  K  V      GA D+   D+DLQARLD+LR+
Sbjct:  164 LVSQVLDEIGIDINQELVN--APSG--AVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRK 224
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BLAST of hypothetical protein DAPPUDRAFT_215551 vs. nr
Match: gi|915272482|ref|XP_013302763.1| (SNF7 family protein [Necator americanus] >gi|568293385|gb|ETN80536.1| SNF7 family protein [Necator americanus])

HSP 1 Score: 73.559 bits (179), Expect = 1.799e-13
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 0 
Query:   45 DDAMGEEDDEEESDAVVNQVLDELGLQLNQDLAGMAVPNGSLAVATPGGKQAVPSGAVGGATDADADLQARLDDLRRE 122
            DDA+G+E D+ ES+ +VNQVLDELG+Q+ Q++AG+    G + V + G K   P  A GGA D D DLQARLD LRRE
Sbjct:  148 DDALGDETDDVESEQIVNQVLDELGIQMGQEMAGLPTAGGQIGV-SAGEKTRQPVAA-GGA-DIDDDLQARLDQLRRE 222
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BLAST of hypothetical protein DAPPUDRAFT_215551 vs. nr
Match: gi|512891995|ref|XP_004922821.1| (charged multivesicular body protein 2a [Bombyx mori])

HSP 1 Score: 72.7886 bits (177), Expect = 3.987e-13
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 0 
Query:   59 AVVNQVLDELGLQLNQDLAGMAVPNGSLAVA--TPGGKQAVPSGAVGGATDADADLQARLDDLRRE 122
            AVV+Q+LDELGLQLN  L+G+    GSL+VA  TP    AV  GA    +DADA+LQARLD+LRRE
Sbjct:  163 AVVSQILDELGLQLNDTLSGLPQATGSLSVAAKTPASPTAVAGGAGAPVSDADAELQARLDNLRRE 228
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BLAST of hypothetical protein DAPPUDRAFT_215551 vs. nr
Match: gi|669223711|emb|CDW54979.1| (charged multivesicular body protein 2a [Trichuris trichiura])

HSP 1 Score: 72.4034 bits (176), Expect = 4.082e-13
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 0 
Query:   45 DDAMGEEDDEEESDAVVNQVLDELGLQLNQDLAGMAVPNGSLAVATPGGKQAVPSGAVGGATDADADLQARLDDLRRE 122
            DDAM +E DEEE+DAVV+Q+LDELG+Q+N++L  +     S+A+A+   +   P+  V    D DADLQARL++LRR+
Sbjct:  148 DDAMADEGDEEETDAVVSQILDELGIQMNEELTRLPSTADSVALASSTKQ---PTAVV----DVDADLQARLENLRRQ 218
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BLAST of hypothetical protein DAPPUDRAFT_215551 vs. nr
Match: gi|685825678|emb|CEF60728.1| (Charged multivesicular body protein 2a [Strongyloides ratti])

HSP 1 Score: 71.633 bits (174), Expect = 1.106e-12
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 0 
Query:   45 DDAMGEEDDEEESDAVVNQVLDELGLQLNQDLAGMAVPNGSLAVATPGGKQAVPSGAVGGATDADADLQARLDDLRR 121
            DD+MGE DD+EES+ +VNQ+LDELG+Q+  +L    +P GS  +    G QA    A G  +DADADL ARL++LRR
Sbjct:  149 DDSMGEADDQEESEGIVNQILDELGIQMGNELN--TLPEGSQGIT--AGAQANKPVAEGVMSDADADLAARLENLRR 221
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BLAST of hypothetical protein DAPPUDRAFT_215551 vs. nr
Match: gi|669330388|gb|KFD70564.1| (hypothetical protein M514_17357 [Trichuris suis] >gi|730376401|gb|KHJ47405.1| SNF7 family protein [Trichuris suis])

HSP 1 Score: 71.2478 bits (173), Expect = 1.179e-12
Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 0 
Query:   45 DDAMGEEDDEEESDAVVNQVLDELGLQLNQDLAGMAVPNGSLAVATPGGKQAVPSGAVGGATDADADLQARLDDLRRE 122
            DDAM +E DEEE+DAVV+Q+LDELG+Q+N++L  +     S+++A+   +   P+  V    D DADLQARL++LRR+
Sbjct:  148 DDAMADEGDEEETDAVVSQILDELGIQMNEELTRLPSTADSVSLASSTKQ---PTAVV----DVDADLQARLENLRRQ 218
The following BLAST results are available for this feature:
BLAST of hypothetical protein DAPPUDRAFT_215551 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000011389.489e-1559.38supercontig:LSalAtl2s:LSalAtl2s118:399399:402184:1... [more]
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BLAST of hypothetical protein DAPPUDRAFT_215551 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
gi|73917738|sp|Q7ZW25.1|CHM2A_DANRE2.975e-857.75RecName: Full=Charged multivesicular body protein ... [more]
gi|75206464|sp|Q9SKI2.2|VPS2A_ARATH3.390e-847.69RecName: Full=Vacuolar protein sorting-associated ... [more]
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BLAST of hypothetical protein DAPPUDRAFT_215551 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|915272482|ref|XP_013302763.1|1.799e-1355.13SNF7 family protein [Necator americanus] >gi|56829... [more]
gi|512891995|ref|XP_004922821.1|3.987e-1360.61charged multivesicular body protein 2a [Bombyx mor... [more]
gi|669223711|emb|CDW54979.1|4.082e-1350.00charged multivesicular body protein 2a [Trichuris ... [more]
gi|685825678|emb|CEF60728.1|1.106e-1251.95Charged multivesicular body protein 2a [Strongyloi... [more]
gi|669330388|gb|KFD70564.1|1.179e-1248.72hypothetical protein M514_17357 [Trichuris suis] >... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1912_size25034supercontigscaffold1912_size25034:13034..17578 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:protein transport
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold1912_size25034-processed-gene-0.4-mRNA-1snap_masked-scaffold1912_size25034-processed-gene-0.4-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1912_size25034:13034..17578-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold1912_size25034-processed-gene-0.4 ID=snap_masked-scaffold1912_size25034-processed-gene-0.4|Name=hypothetical protein DAPPUDRAFT_215551|organism=Tigriopus kingsejongensis|type=gene|length=4545bp|location=Sequence derived from alignment at scaffold1912_size25034:13034..17578- (Tigriopus kingsejongensis)
ATGAGTGATGGGTGGGCTGCGTATCGCCAGACCTCGTCGATTGAAGGCGC
TAATTACAGCCACAGCGTCATCATTCATGAGCACAACTTTGTACATCCCG
AGGACCCCAATGTGCACACGCAACAAATTGAAGGTTGTTAGATGCTCCTA
AAGAAGAAGCTCAAGTATCAGAGCGGAACATCCAGCGAGCTCATGGGCTC
CCATTTGAGCGAGTTCCTATGGAGACGAAAGTTCAAGGACGTGAGGCCAT
TTCATGCGTTCCTCTATTGTGTGGCCAAGTCTTACCCCGTCTGATGCCAA
TTCTTCTTCAGGAGCATCCTGTTGCTCTCCATGTGGTCCTACCCGATCTC
CAACTACCAGCTCTCAAGTACAGACATCACCAGTTCACCCCGGACATTGG
AGGCACCTTTCCCACCTGATCGCCATTGAGCTTGGAACCCGCCCGATCTC
CCTTTGGACACTCCCGACCTCCAACGGGGACCTGCCCGACCTCCAACGGG
GACCTGCCCGACCACTAACGGGGACCTGCCCGACATCCCTTGGGACTTGC
CCGAAATCCCGTGGGACTTGCCCGACATCCCTTGGGACTTGCCCGAAATC
CCGTGGGACTTGCCCGACCTCCAACGGGGACCTGCCCGACCACTAACGGG
GACCTGCCCGAAATCCCGTGGGACTTGCCCGAAATCCCGTGGGACATGCC
CGAAATCCCTTGGGACTTGCCCGAAATCCCGTGGGACTTGCCCGAAATCC
CGTGGAACTTGCCGGAAATCCCGTGGGACCCAAAGAATTCCCGTGGGACT
TGTCCGAAATCCCGGGGGACTTGCCCGACTTCCCGTGGGACCCAAAGAAT
TCCCGTGCGACACGCCTAAAGTACCAAACCAAATCCAAATCCAATCTAAA
CCAAATTTCCCAAAAGTTCCCAAAGCCAATTAAAATACTGTGCAATAAAA
ACTGTTGCAATAACACATTTCTTTCATTGACGTTTTACTGGTCAACTAAG
ATAGCGAAGTCGGTATGCCAAATTATGAACAATATTCCATTCCTTGAATG
TCACAATATTAATGCAATTGCAATCATTTCTTCAAAACGAAGGATTTTCT
TTCTAATCAAAAGAACTTGGTTGCATAGTCGAACTGGTTTTTTTCCTGTG
CATTTTGTCTGTTTCGAGTTGAATCATTCACAAATCCAAGTCATTTATCT
GGCCAAGGATTGGATGGTCAATGGGAAGGGGGGTCCGGGCCCCCCTTCCC
ATTGACCATTGATATTCTAAACATTTTAAAGAAACCCCATTGTCCCAGAA
AGCCATCTAAAATTAGAAATCGTTCGATACAACAAACAAACGCAATTCGT
TTGTCAAATATCACGCAACCTCGGCACTACACACAGTTTACACCCACACG
ACAAAAGAATTATGTTCCTCACGCCACAAGGAACCGTTTGAGTGTTCCTC
GACTTCATTTGACAATCTTATATTTGTCATTGTTTAATGCAGTGAGCCAT
GATGCCCAGTTACAAAAGCCAGGAGAACATTAGTTATCAAAAAACACTAA
GATAGATTTGTTGTGTATACATCTTTGAAGGTAATCGTCCCACGGGATTT
CGGGCAAGTCCCACGGGATTTCGGGCAAGTCCCACGGGATTTCGGGCAAG
TCCCACGGGATTTCGGGTAAGTCCCACGGGAGGTTGGGCAAGTCCCATAG
GATGTCGGGCAGGTCCCCGTTAGTGGTCGGGCAGGTGCCAGATGGAGGTT
GGGAGTGTCCAAAGGGAGATCGGGCGGGTTCCAAGCTCTATGGCGATCAG
GTGGGAAAGGTGCGGGGTGAACAACTGGTGATGTCCGTACTTGAGAGCTG
GTAGTTGGAGATCGGGTAAGACCACAGGGAGAGCAACAGGATGCTCCTGA
AGAAGAATTGGCATCAAACGCGGTAAGACTTGGCCACACAATAGAGGAAC
GCATGAAATGGCCTCACGTCCTTGAACTTTCGTCTCCAAAGGAACTCGCT
CAAATGGGATCCCATGAGCTCGCTGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGGCCTTGACTT
CATCCAGTTGCGGAGATCCTTAGCTCTTGTGAACCTCTTGTTCACCGTGG
CAGCACTGAGTAACTGGCGCTTCTGCAGACAATAAGTCTTCATCTTCAGG
TCCTCCCTGACGATTTTTCTCAAGGACTCCCGTCCTACTCCCGGCCTCCA
AGGCCATTTTCCGGATGGACCTCCTGGGGTTTCTTCGGATTTTCTTCCAA
GTGGCCTCAATGACCCCGCGCGTCCGAACTGACTTTGATCTTCCACTTTT
GGGACGGTTTTGGAGTTGCCCAGTCTCCTTGAACCGCTTGACCGTGTTCC
ATACAGTGGTCTTGGACACTTTGAGGGCCGAGAGCTCCTTGACAATGGAG
CCATAGCTATTTCCTGCTTGGTATAGCATGATGATGGCCTCGCGCTGATC
CATGTAACTAGTTGTGAAGTGGATGATTTGGAAAATGTTTGTAACAAAGA
GTGACAACTACATTTGTGCGCATCATACGTCCTAAGAGTTTTTGGCCCTA
AATTCAAAGACTAAGATTCTATAACGTCCTAAACCTAGCGTTCCAAAACA
TACTGGTCACCCTGTATATCAGAATTTAACATTGCTCGCCTGTATTTTTT
TACAAATAAAACAACTTTCTTGTTGTAATAGATCTGTACTCATACATATT
AGCCTTGATTTCATCATTATAATATTCTTTTAGCCCTCCCGGTCTCGAAA
TGAGTTAAGATCATAACTTGGTGCGGGCCGGCAAGGATTTATGTGTCCTT
CCCGCCTCGGGCACAGAAAGCGCTGCCACTGCTCCTTCCAGGCGTCCATA
GGCTTGAGCTTTCCACTTTTTTCGCGCCCTTTTTACCATTTCAAGTACCA
CTCTCCACAACTTTTCTTGCTTATCTATTTGATTGATCGGTCTGGCTGGT
GTATTTCGCAAATAAGATCGAACTGAAGAAAGACGTTAATAAACTTTCTT
TGTCCGCAGATGATGCCATGGGCGAAGAAGATGATGAAGAGGAGTCGGAC
GCCGTTGTCAACCAAGTCTTGGATGAGCTTGGCCTCCAGTTGAACCAGGA
TCTGGCTGGCATGGCCGTGCCCAACGGATCCCTGGCCGTAGCCACGCCCG
GGGGTAAACAGGCCGTACCCTCTGGAGCGGTTGGAGGAGCGACGGATGCT
GATGCCGATCTCCAAGCCCGACTGGACGACTTGAGGCGAGAATAA
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Synonyms
The feature 'hypothetical protein DAPPUDRAFT_215551' has the following synonyms
Synonym
Tk11193
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