atp-dependent rna helicase, snap_masked-scaffold1_size3401120-processed-gene-10.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000004918 (supercontig:LSalAtl2s:LSalAtl2s259:1039310:1040989:-1 gene:EMLSAG00000004918 transcript:EMLSAT00000004918 description:"maker-LSalAtl2s259-augustus-gene-10.16") HSP 1 Score: 274.633 bits (701), Expect = 1.357e-87 Identity = 155/353 (43.91%), Postives = 220/353 (62.32%), Query Frame = 0 Query: 1 MSFDSLG-LDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNA---TTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTA-ERIDQKVYFAEKHDKIRLLGGLIEE--GEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLA 346 +SFD + L L+ +S + +P+PIQ+ P V +G D++ A+TG+GKT FS+P L +S +R + P L+V PTRELA Q L+ G E+ + V+GGV Q LK GV++LVATPGRLLDL ++G + L+ + +VLDEADRMLD GF DI+++L K+RQT LFSAT+ IR LA L +P+ + + + A + + Q V ++ + + GL+ + + N++L+F K A+RL L K +N IHG+KSQ+AR +A+E FKSG+I IL+ATDVAARG+DI + YV+NY P EDYVHRIGRTGRAGK+G+A Sbjct: 109 LSFDDMSSLGKKCLKCCKS--FKAPTPIQSMTWPVVASGRDVIGIAETGSGKTLAFSVPALAHISERKQRPVKGVNSMPIMLIVAPTRELAMQSQVVLESAGKEI--GFKSLCVYGGVNKYAQRQSLKSGVEILVATPGRLLDLAEEGCVDLSGVSYVVLDEADRMLDQGFEQDIRRILGQTHKERQTCLFSATWPDSIRKLAHEFLKSPIKVTIGSEDLAAGKTVTQIVEVVDERSRDGKIKGLLNKYHKKKNRILIFVLYKREADRLWNSL-KHEWNCTTIHGDKSQDARIQAVENFKSGKIPILIATDVAARGLDIPDVEYVLNYSFPLTIEDYVHRIGRTGRAGKSGIA 456
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000005110 (supercontig:LSalAtl2s:LSalAtl2s26:913218:916036:-1 gene:EMLSAG00000005110 transcript:EMLSAT00000005110 description:"maker-LSalAtl2s26-augustus-gene-8.40") HSP 1 Score: 274.633 bits (701), Expect = 2.624e-86 Identity = 161/383 (42.04%), Postives = 228/383 (59.53%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL---------QILSTSGKRKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MPK--KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEG----------EWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVS-LPDGNRVAAK 358 F + + + ++ + Y+ P+P+Q AIPA+ G D++A AQTG+GKTA F +P+L Q S +++ P AL++ PTRELA Q+ + +K Y S + P +V+GG + Q+ L RG +LVATPGRL+D+ +G ISL + + LVLDEADRMLDMGF I+K+++ MP +RQTL+FSATF KEI+ LA L N + + V +T+E I QK+ + ++ DK L L+E + + LVF T+ A++L E L K GF +IHG+++Q R AL F+SG ILVAT VAARG+DI + +V+N++LP E+YVHRIGRTGR G GLA S D NR K Sbjct: 181 DFMDINMAEIMANNIKLANYSKPTPVQKHAIPAITNGRDLMACAQTGSGKTAAFLVPILNRIFEGGPPQPAPHSKNKRSKQYPMALILAPTRELATQIFDEAKKFAYRSLVQPC----VVYGGANVFEQMMDLDRGCHLLVATPGRLVDMLDRGKISLEQCKYLVLDEADRMLDMGFEPQIRKIVENDNMPPAGQRQTLMFSATFPKEIQMLARDFLANYIFLAVGRVGSTSENITQKIVWVDELDKRSFLLDLLEAAGLAKGPAGNEDSSLTLVFVETRKGADQLDEYLYKEGFPVTSIHGDRTQREREDALRRFRSGNTPILVATAVAARGLDIPNVKHVINFDLPSDVEEYVHRIGRTGRMGNLGLATSFFNDRNRNLTK 559
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000002581 (supercontig:LSalAtl2s:LSalAtl2s151:1305107:1306803:-1 gene:EMLSAG00000002581 transcript:EMLSAT00000002581 description:"maker-LSalAtl2s151-snap-gene-13.39") HSP 1 Score: 257.684 bits (657), Expect = 2.700e-81 Identity = 141/358 (39.39%), Postives = 207/358 (57.82%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLP-LLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLL--INPVSIEVAPRNTTAER-IDQKVYFAEKHDKIRLLGGLIE---EGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPD 351 SF G L+ ++S G+ +P+ IQAQ P G +I+A +TG+GKT GF LP L ++ +R P L++ PTRELA Q+ + + S++ T + GG QI L RG +++VATPGRL+DL + G + L +VLDEADRMLDMGF I+K+++ + RQ L++SAT+ E+++LA + + + A + I Q F E+ +K+ + ++E E E +VL+F TK ++L +L F IHG+K+Q RT+AL+ F+SG I ILVATDVA+RG+D+N + V+NY+ P EDYVHRIGRTGR K G + S D Sbjct: 78 FSFQETGFPLGLIERIKSHGFEAPTAIQAQGWPIATNGKNIIAIGETGSGKTLGFVLPGLCHLMRXPPRRNRGDGPVVLIIAPTRELAEQIHNVVDGFASKIP----TACLVGGNHKQGQIRDLNRGAEIVVATPGRLIDLMEDGDVDLKRCSYMVLDEADRMLDMGFEPQIRKIMRQVRPDRQLLMWSATWPSEVQSLAHDFFGGTDYAHVNIGSSELXANKLIMQDFKFCERFEKMDSIKEILESLSEVESKKVLIFAATKIRVDQLVRKLKYWNFVVDGIHGDKTQAMRTRALDKFRSGRINILVATDVASRGLDVNDIKVVINYDFPNNIEDYVHRIGRTGRCSKEGKSFSFFD 431
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000011390 (supercontig:LSalAtl2s:LSalAtl2s787:174367:180499:1 gene:EMLSAG00000011390 transcript:EMLSAT00000011390 description:"augustus_masked-LSalAtl2s787-processed-gene-0.30") HSP 1 Score: 265.388 bits (677), Expect = 7.825e-81 Identity = 138/357 (38.66%), Postives = 214/357 (59.94%), Query Frame = 0 Query: 7 GLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQG---VISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVY-FAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMA-IHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PDGNRVA 356 G+ +L ++ +GY P+PIQ QAIP +++G D++ A+TG+GKT F LPL + + + + P A+++TPTREL Q+G+ ++K+ + A++ V+GG I+ QIA LKRG +++V TPGR++D+ V + I +VLDEADRM DMGF + +++ +Q ++FSATF +++ LA +L PV + V R+ + IDQ VY E+H ++LL L + +++F + A+ L + L + S A +HG Q R + FK+G+++ILVAT VAARG+D+ +L VVNY+ P EDYVHR GRTGRAG +G A + P+ R A Sbjct: 228 GVSQRILDLLKRNGYEKPTPIQTQAIPIIMSGRDMIGIAKTGSGKTLAFLLPLFRHIMAQPELEEGDGPIAIIMTPTRELCMQIGKEIKKFSKAIKGARSV-CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNCRRITYVVLDEADRMFDMGFEPQVSRIIDNCRPDKQMVMFSATFPRQMEALARRILCKPVEVTVGGRSVVCKDIDQSVYVLEEEHKFLKLLELLGQRSSEGLIIIFVDKQEHADSLLKDLMSASYTSCASLHGGVDQYDRDSIITNFKNGKVKILVATSVAARGLDVKELVLVVNYDCPNHYEDYVHRCGRTGRAGNSGFAATFLTPEQGRYA 583
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000011189 (supercontig:LSalAtl2s:LSalAtl2s760:470421:474651:1 gene:EMLSAG00000011189 transcript:EMLSAT00000011189 description:"maker-LSalAtl2s760-augustus-gene-3.33") HSP 1 Score: 260.766 bits (665), Expect = 1.318e-79 Identity = 147/367 (40.05%), Postives = 212/367 (57.77%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAER-IDQKVYFAEKHDKIRLLGGLIEE---GEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL-PDGNRVAAKPDVD 362 + F G +L+ + G+ P+ IQ+Q P L+G++++ A TG+GKT G+ LP + ++ + P LV+ PTRELA Q+ E ++G T +FGG PQ+ L+RG ++++ATPGRL+D+ + G I++ LVLDEADRMLDMGF I+K+++ + RQ L++SAT+ KE+R LAE L + V I + A I Q V E K L L+EE N++L+F TK A+ LT + + G+ +M IHG+K Q R L FK G IL ATDVAARG+D++ + +V+NY+ P SEDY+HRIGRTGR + G A +L GN AK VD Sbjct: 115 LDFTEAGFPDYILKEFKRQGFERPTAIQSQGWPIALSGSNMVGIAMTGSGKTCGYLLPGIIHVNNQPYLEEGDGPIVLVLAPTRELAQQIQEVASEFGRTSRIKSTC--IFGGAPKGPQLRDLERGCEIVIATPGRLIDILEMGKINMRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVRRLAEDFLDDYVHINIGAATLHANHNILQIVDVCEDFQKEEKLARLLEEIGCEPHNKILIFVETKRKADELTRLMRRDGYPAMCIHGDKQQKERDWVLGEFKHGATTILXATDVAARGLDVDDVKFVINYDYPNNSEDYIHRIGRTGRKDRTGTAYTLFTSGNSAKAKDLVD 479
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000010143 (supercontig:LSalAtl2s:LSalAtl2s66:712270:714003:-1 gene:EMLSAG00000010143 transcript:EMLSAT00000010143 description:"augustus_masked-LSalAtl2s66-processed-gene-7.1") HSP 1 Score: 252.677 bits (644), Expect = 2.225e-79 Identity = 136/341 (39.88%), Postives = 206/341 (60.41%), Query Frame = 0 Query: 13 LRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLP-LLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTA-ERIDQKVYFAEKHDKI--RLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 + A++ G+ +PSPIQ QA P +L G D++ AQTGTGKT F LP + I S S R+ P LV++PTRELA Q+ + ++KY + V+GG Q+ + +GV +++ATPGRL DL + G I++ I LVLDEADRMLDMGF I+K+L + RQT++ SAT+ +R LA + +P+++ + + A + QK++ E ++ RLL ++ ++F + K + + LC G + +IHG + Q R +AL FK G +RIL+ATDVA+RGID+ + +V+N++ P E+YVHRIGR+GRAGK G ++S Sbjct: 1 MTAIQKRGFKNPSPIQCQAWPYLLKGLDLIGIAQTGTGKTLAFLLPSFIHIDSQSIPREKRGGPNVLVLSPTRELALQIADEVKKYEYR---GIKSVCVYGGGDRKAQVKVVTQGVQIVIATPGRLNDLIESGCIAVESITYLVLDEADRMLDMGFEPQIRKILLDVRPDRQTVMTSATWPPGVRRLASNYMKDPITVSIGSLDLAAVHSVTQKIFVVESEEEKDDRLLDFFNNMTPEDKAIIFMSKKAKVDDYSSSLCLAGVDCQSIHGGRDQMDREQALLDFKLGHVRILIATDVASRGIDVEDISHVINFDFPNSMEEYVHRIGRSGRAGKKGSSISF 338
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000008048 (supercontig:LSalAtl2s:LSalAtl2s479:213954:217803:1 gene:EMLSAG00000008048 transcript:EMLSAT00000008048 description:"maker-LSalAtl2s479-augustus-gene-2.18") HSP 1 Score: 257.684 bits (657), Expect = 6.411e-79 Identity = 147/371 (39.62%), Postives = 208/371 (56.06%), Query Frame = 0 Query: 8 LDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL---QILSTSGKRKNATT-PRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMP-------------------------KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 L P +L +E GYT P+PIQ QAIP L DI+ A+TG+GKT F LPLL Q L + + ++ P A+++ PTRELA Q+ E +G L T V GG+ Q +L+ G ++++ATPGRL+D+ + + L+ +VLDEADRM+DMGF D++K+L MP K RQT++F+AT + LA L P + + ER++Q VY +++DK L ++ G +++F K A++L + L KMG+N+ +HG K Q R AL G K+G ILVATDVA RGIDI + V+NY++ K E Y HRIGRTGRAGK+G A+S Sbjct: 331 LSPEILEIIEKVGYTEPTPIQRQAIPIGLQNRDIIGVAETGSGKTCAFLLPLLVWIQSLPKTTRMEDQDQGPYAIIMAPTRELAQQIEEECNTFGGPL--GIXTVAVIGGLSREDQGFKLRLGCEIVIATPGRLIDVLENRYLVLSRCTYIVLDEADRMIDMGFEPDVQKILDHMPVTNAKPDNDEAENEAALLENIRSKNKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIGRPVERVEQVVYMMKENDKRNKLISILNNGIEPPIIIFVNQKKGADKLAQGLEKMGYNAATLHGGKGQEQREYALSGLKAGNKDILVATDVAGRGIDIKNVSLVINYDMAKSIEPYTHRIGRTGRAGKSGKAISF 699
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000000846 (supercontig:LSalAtl2s:LSalAtl2s1142:195200:196664:-1 gene:EMLSAG00000000846 transcript:EMLSAT00000000846 description:"augustus_masked-LSalAtl2s1142-processed-gene-1.9") HSP 1 Score: 239.195 bits (609), Expect = 1.324e-74 Identity = 136/351 (38.75%), Postives = 210/351 (59.83%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 +F LGL L A ES G+ +PS IQ +AIP L G DI+ A+TG+GKTA F+LP+LQ L +R A LV+TPTRELA Q+ E +K G S ++ GG+ + Q L + +++ATPGRL+D ++ L ++ L++DEADR+L+M F ++ K+L +P+ R+ +LFSAT +K++ L L +PV +EV+ + T +++ Q F K L +I E N ++F++T +L L +GF ++ ++G SQN R +L FK+ IL+ATDVA+RG+DI + V+NY++P S+DY+HR+GRT RAG++G A++ Sbjct: 25 TFSDLGLTEVLCEACESLGWKTPSKIQKEAIPVALTGRDIIGLAETGSGKTAAFALPVLQSLLEKPQRFFA-----LVLTPTRELAYQISEQFEKLGK--SIGVKCVVLVGGMDMVSQALVLGKKPHIIIATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKILSALPRGEGRKNMLFSATMTKKVAKLQRASLRDPVRVEVSSKYQTVDKLLQYYLFIPLKYKEMYLVHIINELAGNSFIIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKNKSRSILIATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGRAITF 368
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000001805 (supercontig:LSalAtl2s:LSalAtl2s1306:97666:99668:-1 gene:EMLSAG00000001805 transcript:EMLSAT00000001805 description:"maker-LSalAtl2s1306-augustus-gene-0.42") HSP 1 Score: 242.662 bits (618), Expect = 1.797e-74 Identity = 136/342 (39.77%), Postives = 207/342 (60.53%), Query Frame = 0 Query: 19 SGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILS---TSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKI-NPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLK--LMP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWN---QVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 YT P+P+Q A+P +L +D+++ AQTG+GKTA F LP++ L S + TPR L++ PTREL Q+ + +KY ++++ ++++GG + + L VD+L ATPGRL+D+ + IS IE LV+DEADRML+MGF I +++ MP KRQTLLFSATF EI+ LA L + + ++V +E I+Q + + ++K+ L ++E E N ++L+F K + L RLC + +IHG++ Q R +AL FK G ILVAT+VA+RG+DI ++ V+NY+LP+ YVHRIGR+GR G +G ++S Sbjct: 182 CSYTRPTPVQKHAVPIILMKHDLISCAQTGSGKTAXFLLPIIHSLHKKRISSNSSDKATPRTLILGPTRELVVQINDEARKYCAKMN--IDCRVIYGGSSTESSKYILLNNRVDILSATPGRLIDMLGKEHISFENIEFLVIDEADRMLEMGFRESIDEVVNHFTMPGTTKRQTLLFSATFPPEIQILASEYLKDYLFLKVGVVGGASEDIEQVIVQVKDYEKMTKLLETLKENEVNPETKILIFARKKRGVDFLATRLCLDKHPATSIHGDRFQEQREEALRDFKRGSKPILVATEVASRGLDIPKVSLVINYDLPQDISTYVHRIGRSGRVGNSGKSISF 521
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000000395 (supercontig:LSalAtl2s:LSalAtl2s1063:103535:105763:1 gene:EMLSAG00000000395 transcript:EMLSAT00000000395 description:"augustus_masked-LSalAtl2s1063-processed-gene-0.12") HSP 1 Score: 240.35 bits (612), Expect = 1.650e-72 Identity = 144/360 (40.00%), Postives = 208/360 (57.78%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVF--GGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQ---KVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLP-DGNR 354 SF ++ L LL+A+E Y P+PIQA IP LAG D+ A TGTGKTA + LP+L+ L R N + R +V+ PTREL QV + +LS + I GG+ + Q L++ D+++ATPGRL+D ++ L IE+L+LDEADRMLD F+ +K+++K KRQTLLFSAT + ++ L+ L PV I V A + Q ++ + D+ +L L+ + +VF TK +RL L +G +HGN SQ R ++L+ FK EI +L+ TDVAARG+DI+ + V+NY LP E Y+HR+GRT RAG+AG +VS+ +G+R Sbjct: 183 SFYAMXLSRPLLKAIEXLRYVHPTPIQASTIPVALAGRDVCGCAATGTGKTAXYMLPILERLLF---RPNQSITRVIVLVPTRELGVQVYQ----VSKQLSQFTSIDIALSVGGLDLKAQELALRKNPDIVIATPGRLIDHIKNTPTFGLENIEVLILDEADRMLDECFLEQMKEIVKSCSPKRQTLLFSATMTDKVNDLSTMALRKPVKIFVDSNKVVAWNLRQEFVRIRANRESDREGILAALVCRTFRDHTIVFIQTKVQCHRLLILLSLLGVRVGELHGNLSQPQRLESLKKFKEEEIDVLITTDVAARGLDISGVKTVINYTLPTTLEHYIHRVGRTARAGRAGRSVSIAGEGDR 535
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|143455968|sp|Q5JKF2.2|RH40_ORYSJ (RecName: Full=DEAD-box ATP-dependent RNA helicase 40) HSP 1 Score: 288.5 bits (737), Expect = 9.901e-89 Identity = 156/352 (44.32%), Postives = 225/352 (63.92%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLP-LLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRN--TTAERIDQKVYFAEKHDKIRLLGGLI-EEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 SF++ G P +L+ ++ +G++SP+PIQAQ+ P L D++A A+TG+GKT G+ LP + I ++ P LV+ PTRELA Q+ E K+G S ++ ++GG PQ+ L RGVDV+VATPGRL D+ + ISL ++ LVLDEADRMLDMGF I+K++K +P +RQTL+++AT+ KE+R +AE LL++PV + + + I Q V +K+R L ++ + ++VL+F TTK ++L L + F + AIHG+KSQ+ R K L F+SG ILVATDVAARG+DI + V+NY+ P EDYVHRIGRTGRAG G+A + Sbjct: 151 SFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSG--PTVLVLAPTRELATQILEEAVKFGR--SSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTF 497
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|134034091|sp|A1CXK7.1|DED1_NEOFI (RecName: Full=ATP-dependent RNA helicase ded1) HSP 1 Score: 285.804 bits (730), Expect = 1.032e-88 Identity = 165/383 (43.08%), Postives = 240/383 (62.66%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL-QILST---------SGK----RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLK--LMPK--KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIE-EGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPD-GNRVAAKPDVD 362 +F + LD L+ ++ + Y +P+P+Q +IP V+ G D++A AQTG+GKT GF P+L Q T SG+ R+ P +L++ PTREL +Q+ + +K Y S + P +V+GG I Q+ +++RG D+LVATPGRL+DL ++G ISL I+ LVLDEADRMLDMGF I+++++ MP +RQTL+FSATF ++I+ LA L + V + V +T+E I QKV + E HDK +L ++ G L+F TK A+ L++ L F + AIHG+++Q R +ALE F+SG ILVAT VAARG+DI + +V+NY+LP +DYVHRIGRTGRAG G+A + + GNR + +D Sbjct: 191 AFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSAVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPC----VVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELID 569
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|108861885|sp|Q8H136.2|RH14_ARATH (RecName: Full=DEAD-box ATP-dependent RNA helicase 14) HSP 1 Score: 283.878 bits (725), Expect = 1.161e-88 Identity = 155/352 (44.03%), Postives = 221/352 (62.78%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRN--TTAERIDQKVYFAEKHDKIRLLGGLIEEGE-WNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 MSF++ G P LLR V S+G+++P+PIQAQ+ P + G DI+A A+TG+GKT G+ +P L + + P LV++PTRELA Q+ E K+G S + ++GG PQ+ L+RG D++VATPGRL D+ + ISL +I LVLDEADRMLDMGF I+K++K +P KRQTL+++AT+ K +R +A LL+NP + + + + I Q + +K R L ++ E ++V++F +TK ++LT L + F + AIHG+KSQ R L F+SG +LVATDVAARG+D+ + VVNY+ P EDYVHRIGRTGRAG G A + Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRI-RNDSRMGPTILVLSPTRELATQIQEEAVKFGR--SSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTF 505
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|1706311|sp|P24784.2|DBP1_YEAST (RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD box protein 1; AltName: Full=Helicase CA1) HSP 1 Score: 283.878 bits (725), Expect = 1.218e-88 Identity = 163/371 (43.94%), Postives = 223/371 (60.11%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSG------------KRKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGN 353 + F S LD L+ ++ + +T P+P+Q +IP V G D++A AQTG+GKT GF PL L SG RK P ALV+ PTRELA Q+ E +K Y S + P +V+GG I Q+ + RG D+LVATPGRL DL ++G +SLA I+ LVLDEADRMLDMGF I+ +++ MP + RQTL+FSATF +I+ LA L N + + V +T+E I Q++ + + DK L L+ L+F TK A++LT+ L F + AIHG+++Q R +AL FK+ ILVAT VAARG+DI + +V+NY+LP +DYVHRIGRTGRAG G+A S + N Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGY--PSALVLAPTRELATQIFEEARKFTYRSWVRPC----VVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSN 518
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|108861890|sp|Q84W89.2|RH37_ARATH (RecName: Full=DEAD-box ATP-dependent RNA helicase 37) HSP 1 Score: 284.263 bits (726), Expect = 1.383e-88 Identity = 166/378 (43.92%), Postives = 229/378 (60.58%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPR--------ALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLM--PKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIE-------EGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVS-LPDGNRVAAKP 359 +F + L AL + Y P+P+Q AIP +L G D++A AQTG+GKTA F P I+S K ++ PR A++++PTRELA+Q+ + +K+ + + +GG IN Q+ L+RGVD+LVATPGRL DL ++ +S+ I L LDEADRMLDMGF I+K+++ M P + RQTLLFSATF +EI+ LA L N + + V ++ + I Q+V F DK L L+ +G+ LVF TK A+ L LC GF + +IHG+++Q R AL+ FKSG ILVATDVAARG+DI + +VVN++LP +DYVHRIGRTGRAGK+GLA + DGN A+P Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFP---IISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQT--GVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARP 532
BLAST of atp-dependent rna helicase vs. nr
Match: gi|738295302|ref|WP_036248925.1| (ATP-dependent RNA helicase RhlE [Methylobacter sp. BBA5.1]) HSP 1 Score: 466.463 bits (1199), Expect = 4.389e-160 Identity = 237/358 (66.20%), Postives = 279/358 (77.93%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 MSF +LGL LLRA+ +GYT PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS K A P R L++TPTRELAAQVGES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL Q + L ++E LVLDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS +IR L GLL+NPV IEVAPRNT AE ++Q VY K K LL LI+E +W QVLVFT+TKH ANRLTE+L K + AIHGNKSQ ART AL GFK+GE+R+LVATDVAARGIDI LP+VVN+ELP+ DYVHRIGRTGRAG+ G AVSL + +A Sbjct: 1 MSFSTLGLSDPLLRAIAEAGYTRPSPIQSQAIPAVLKGHDLLAAAQTGTGKTAGFTLPILHRLSE--KSYGANRPIRVLILTPTRELAAQVGESVAKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVNQNAVKLDKVETLVLDEADRMLDMGFIRDIRKIIALLPKKRQNLLFSATFSDDIRKLTTGLLVNPVKIEVAPRNTAAELVEQIVYTVNKPQKAELLCRLIKENDWRQVLVFTSTKHGANRLTEKLNKTDIKAAAIHGNKSQGARTSALAGFKAGELRVLVATDVAARGIDIALLPHVVNFELPRAPADYVHRIGRTGRAGEEGQAVSLVSHDEYSA 356
BLAST of atp-dependent rna helicase vs. nr
Match: gi|496588293|ref|WP_009286911.1| (MULTISPECIES: DEAD-like helicase [Halomonas] >gi|445565565|gb|ELY21674.1| DEAD-like helicase [Halomonas titanicae BH1] >gi|532588911|emb|CDG55047.1| ATP-dependent RNA helicase RhlE [Halomonas sp. A3H3] >gi|751766565|gb|KIN14394.1| ATP-dependent RNA helicase RhlE [Halomonas sp. KHS3] >gi|1087014153|emb|SDI61871.1| ATP-dependent RNA helicase RhlE [Halomonas sp. DSM 26667] >gi|1305099611|gb|PKH61256.1| ATP-dependent RNA helicase RhlE [Halomonas sp. Choline-3u-9]) HSP 1 Score: 466.463 bits (1199), Expect = 4.518e-160 Identity = 249/416 (59.86%), Postives = 301/416 (72.36%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPT------------GNERRPQRPRRP-GQGGQGGGQR 403 MSF LGL LLRAV + GYT P+PIQ QAIP VL G D+LA+AQTGTGKTAGF+LP+LQ L+T GKR RALV+TPTRELAAQVGES+ YG L A + I+FGGV PQI LK G+DVLVATPGRLLDL QQG + L+ +EILVLDEADRMLDMGFIHDIK+LL+L+PKKRQ LLFSATFS EI+TLA+ LL NP IEVAPRN TA++I+Q +Y ++ K LL LI++ W QVLVFT TKH ANRL E+L K SMAIHGNKSQ ART+AL FKSG++++LVATD+AARG+DIN+LP+VVN++LP V+EDYVHRIGRTGRAG G AVSL + A +++ + P +EP N+R+P+ R+P GQ GG+R Sbjct: 1 MSFSELGLHADLLRAVTAQGYTEPTPIQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQRLNT-GKRPTKRQVRALVLTPTRELAAQVGESVSTYGQHL--ALRSHIIFGGVGQQPQIDALKAGLDVLVATPGRLLDLHQQGHVDLSCVEILVLDEADRMLDMGFIHDIKRLLRLVPKKRQNLLFSATFSNEIQTLAQQLLDNPAMIEVAPRNATADKIEQAIYRVDREKKRELLAHLIQQNGWFQVLVFTRTKHGANRLAEQLSKQDIPSMAIHGNKSQGARTRALTAFKSGDLQVLVATDIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGEAVSLVCVDEDALLGNIE-RLIKQKLTKHIEPGFEPDPSIKPEPIENGRRNQRQPRAKRKPEGQSANTGGER 412
BLAST of atp-dependent rna helicase vs. nr
Match: gi|519002079|ref|WP_020157954.1| (MULTISPECIES: RNA helicase [Methylobacter]) HSP 1 Score: 466.463 bits (1199), Expect = 4.686e-160 Identity = 237/358 (66.20%), Postives = 279/358 (77.93%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 MSF +LGL LLRA+ +GYT PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS K A P R L++TPTRELAAQVGES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL Q + L ++E LVLDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS +IR L GLL+NPV IEVAPRNT AE ++Q VY K K LL LI+E +W QVLVFT+TKH ANRLTE+L K + AIHGNKSQ ART AL GFK+GE+R+LVATDVAARGIDI LP+VVN+ELP+ DYVHRIGRTGRAG+ G AVSL + +A Sbjct: 1 MSFSTLGLSDPLLRAIAEAGYTRPSPIQSQAIPAVLKGHDLLAAAQTGTGKTAGFTLPILHRLSE--KSYGANRPIRVLILTPTRELAAQVGESVAKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVNQNAVKLDKVETLVLDEADRMLDMGFIRDIRKIIALLPKKRQNLLFSATFSDDIRKLTTGLLVNPVKIEVAPRNTAAELVEQIVYTVNKPQKAELLCRLIKENDWRQVLVFTSTKHGANRLTEKLNKTDIKAAAIHGNKSQGARTSALAGFKAGELRVLVATDVAARGIDIALLPHVVNFELPRAPADYVHRIGRTGRAGEEGQAVSLVSHDEYSA 356
BLAST of atp-dependent rna helicase vs. nr
Match: gi|759736345|ref|WP_043447071.1| (ATP-dependent RNA helicase RhlE [Halotalea alkalilenta]) HSP 1 Score: 467.233 bits (1201), Expect = 4.925e-160 Identity = 252/418 (60.29%), Postives = 301/418 (72.01%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PDGN-------RVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRPQR-PRRP-GQGGQGGGQRGPGG 407 MSF SLGL P L RAV+ +GYT PSPIQA+AIPA L G D+LAAAQTGTGKTAGF+LP+LQ LS +N RAL++ PTRELAAQV S+++YG L+P +++VFGGVKINPQI RL+ GVD+LVA PGRLLDL Q + L ++E LVLDEADRMLDMGF+ DIK++L L+P KRQ LLFSATFSKEIRTL + +L +PV+IEVAPRN AE + Q VY K K LL LI++ EW QVLVFT TKH ANR+T+RL K G ++ AIHGNKSQNART AL GFKSG + +LVATDVAARGIDI+QLP V+N+ELP V DYVHRIGRTGRAG +G AVSL PD R+ +KP + A G P+ ER P+R PR+P GQG +G Q G Sbjct: 1 MSFSSLGLTPELQRAVDDAGYTEPSPIQAKAIPACLEGRDVLAAAQTGTGKTAGFTLPILQRLSARAYTRNRPV-RALILAPTRELAAQVHASVEQYGQYLNPRLKSEVVFGGVKINPQIERLRDGVDILVACPGRLLDLVGQRAVRLDQVETLVLDEADRMLDMGFLRDIKRVLALLPAKRQNLLFSATFSKEIRTLTQSILKDPVTIEVAPRNAAAESVSQAVYKVPKPAKSALLIHLIKQHEWKQVLVFTATKHMANRVTQRLEKAGISAAAIHGNKSQNARTNALAGFKSGTVEVLVATDVAARGIDISQLPNVINFELPNVPADYVHRIGRTGRAGASGQAVSLVSPDEQDQLRQIERLISKP------IEVIAPEGFDPST--VVVEREPERPPRQPRGQGRRGAPQSARSG 409
BLAST of atp-dependent rna helicase vs. nr
Match: gi|652905290|ref|WP_027159297.1| (ATP-dependent RNA helicase RhlE [Methylobacter luteus]) HSP 1 Score: 466.463 bits (1199), Expect = 5.654e-160 Identity = 232/357 (64.99%), Postives = 277/357 (77.59%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 M F +LGL LLRA+ +GYT PSPIQ+QAIPAVL G D+LAAAQTGTGKTAGF+LP+L LS N R L++TPTRELAAQVGES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL Q + L ++E LVLDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS +IR L GLL+NPV IEVAPRNT AE ++Q VY K K LL L++E +W QVLVFT+TKH ANRLTE+L K+ + AIHGNKSQ ART AL GFK+GE+R+LVATDVAARGIDI QLP+V+N+ELP+ DYVHRIGRTGRAG+ G A+SL + +A Sbjct: 1 MPFSTLGLSDPLLRAIADAGYTKPSPIQSQAIPAVLEGRDLLAAAQTGTGKTAGFTLPILHRLSQKSYSTNRPI-RVLILTPTRELAAQVGESVTKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVSQNAVKLDKVETLVLDEADRMLDMGFIRDIRKVIALLPKKRQNLLFSATFSDDIRKLTTGLLVNPVKIEVAPRNTAAELVEQIVYTVNKTQKAELLCHLVKENDWRQVLVFTSTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALAGFKAGELRVLVATDVAARGIDIAQLPHVINFELPRSPADYVHRIGRTGRAGEEGQAISLVSHDEYSA 356 The following BLAST results are available for this feature:
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
Pagesback to top
BLAST of atp-dependent rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of atp-dependent rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1_size3401120:989238..990893- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold1_size3401120-processed-gene-10.1 ID=snap_masked-scaffold1_size3401120-processed-gene-10.1|Name=atp-dependent rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=1656bp|location=Sequence derived from alignment at scaffold1_size3401120:989238..990893- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'atp-dependent rna helicase' has the following synonyms
Add to Basket
|