atp-dependent rna helicase, snap_masked-scaffold1_size3401120-processed-gene-10.1 (gene) Tigriopus kingsejongensis

Overview
Nameatp-dependent rna helicase
Unique Namesnap_masked-scaffold1_size3401120-processed-gene-10.1
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000007141 (supercontig:LSalAtl2s:LSalAtl2s402:374905:376772:1 gene:EMLSAG00000007141 transcript:EMLSAT00000007141 description:"maker-LSalAtl2s402-augustus-gene-4.12")

HSP 1 Score: 230.335 bits (586), Expect = 6.899e-72
Identity = 128/362 (35.36%), Postives = 201/362 (55.52%), Query Frame = 0 
Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHD-KIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD 362
            +FDS+GL   LLR + + G+  PS IQ ++I  +L G D++A AQ+GTGKTA FS+ +LQ + T+ +       + LV++PTRELA Q+ + L   G  ++         GG  +   I +L  G  V+  TPGR+ D+ ++  +    I++LVLDEAD ML+ GF   I  + + +P   Q  L SAT   EI  +    + +P+ I V     T E   Q     E+ + K   L  L +     Q ++F  TK   + LTE++ +  F   ++HG+  Q  R   ++ F+SG+ R+L+ TDV ARGID+ Q+  V+NY+LP   E Y+HRIGR+GR G+ G+A++    + +    D++
Sbjct:   29 TFDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQSIDTTMRE-----TQCLVLSPTRELAVQIQKVLLALGDYMNVQ--CHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQIALISATLPHEILEMTSKFMADPIRILVKRDELTLEGXKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIE 383
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BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000002458 (supercontig:LSalAtl2s:LSalAtl2s1472:18624:24320:1 gene:EMLSAG00000002458 transcript:EMLSAT00000002458 description:"maker-LSalAtl2s1472-snap-gene-0.14")

HSP 1 Score: 237.269 bits (604), Expect = 2.000e-69
Identity = 128/355 (36.06%), Postives = 206/355 (58.03%), Query Frame = 0 
Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKR---KNATTPRALVVTPTRELAAQVGESLQKYGSELS----PAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            SF  +     +++A++  G   P+ IQ Q IPAVL+G D++  A TG+GK+  F LP++       KR        P  L+V P+RELA Q+ ES+  Y S L     P   + +  GG   +  +  +K+GV ++VATPGRL+DL  + +++L     L LDEADRM+DMGF  D++ +      +RQTLLFSAT  K+I+  A+  L+ P+++ V      +  I Q+V + +   K+  +  ++++     VL+F   K   + + E L   G +++++HG K Q+ R+KA+  F++    +LVATDVA++G+D   + +V+NY++P   E+YVHRIGRTGR    G A ++
Sbjct:  974 SFQDMKFPLPIIKALKEKGIERPTSIQMQGIPAVLSGRDLIGIAYTGSGKSLVFILPIVMFCLEQEKRLPFVQNEGPYGLIVVPSRELAKQIHESIYSYFSYLKKNSFPEIRSCLAIGGTSSSETMDVVKKGVHIVVATPGRLMDLLNKKMLNLEICRYLCLDEADRMIDMGFEEDVRTIFSYFKGQRQTLLFSATMPKKIQNFAQSALVKPITVNVGRAGAASMNIIQEVEYVKSEAKVVHIIEMLKKTP-PPVLIFAERKQDVDAIHEYLLLKGVSAVSVHGGKDQDDRSKAVTDFRNLRKDVLVATDVASKGLDFPCIQHVINYDMPDDIENYVHRIGRTGRGNFKGYATTM 1327
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BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000011452 (supercontig:LSalAtl2s:LSalAtl2s790:154718:161369:1 gene:EMLSAG00000011452 transcript:EMLSAT00000011452 description:"maker-LSalAtl2s790-augustus-gene-1.30")

HSP 1 Score: 232.261 bits (591), Expect = 3.032e-69
Identity = 131/350 (37.43%), Postives = 192/350 (54.86%), Query Frame = 0 
Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEK--HDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            SF   G D  LL+++  S +T P+PIQ+  IP  L+G D +  A+TG+GKTA F  P++  +       N   P AL++ PTRELA Q+    +K+G            +GG     Q    + G ++ +ATPGR++D+ +  V +L  +  LVLDEADRM DMGF   ++ +   +   RQTLLFSATF K++  LA  +L +P+ +        +E + Q V   EK  +    +L  L+E      VL+F T K     L + L    F    IHG+ +Q+ R + +  FK  +  ILVATDVAARG+DI  +  V+NY++ +  + + HRIGRTGRAG  G A +L
Sbjct:  277 SFGHFGFDEVLLKSIRKSEFTQPTPIQSIGIPVCLSGRDAIGIAKTGSGKTATFLWPIIIHIQHQRPLLNGEGPIALILVPTRELALQIYTEAKKFGKVYD--LNAVCAYGGGSKWEQSKCFESGAEIAIATPGRMIDMIKMKVTNLQRVTYLVLDEADRMFDMGFEAQVRSICDHVRPDRQTLLFSATFKKKVEKLARDVLTDPIKVVQGSIGEASEDVTQIVKVLEKGGYKWEWVLQNLVEFTSAGSVLIFVTKKLNCEELAQNLKLKEFECELIHGDLNQHVRNEIIYKFKKKQFPILVATDVAARGLDIPHIRTVLNYDIARDIDTHTHRIGRTGRAGIKGTAYTL 624
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BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000000249 (supercontig:LSalAtl2s:LSalAtl2s1036:82728:88820:1 gene:EMLSAG00000000249 transcript:EMLSAT00000000249 description:"maker-LSalAtl2s1036-augustus-gene-0.32")

HSP 1 Score: 218.779 bits (556), Expect = 4.960e-67
Identity = 115/349 (32.95%), Postives = 194/349 (55.59%), Query Frame = 0 
Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVF--GGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            F+   L    L  +   G+  PSPIQ  +IP  L+G DILA A+ GTGKT  +S+P+L+ +  S         + +++ PTRELA Q  +       ELS  +  +++   GG  +   I R+   V ++VATPGR+LDL ++GV  +   +++ LDEAD++L   F   + +L++ +P++RQ LL SATF   +    +  + +P  + +     T + I Q   F ++  K+  L  L  + + NQ ++F  +      L +++ ++G++   IH   +Q  R +    F++G  R LV +D+  RGIDI  +  V+N++ PK++E Y+HRIGR+GR G  G+A++L
Sbjct:   53 FEDFCLKRETLMGIFEKGWEKPSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPILEQIDPSND-----VIQGMIIVPTRELALQTSQ----ICIELSKHRNVKVMVTTGGTNLKEDIMRIYEKVHLVVATPGRILDLIEKGVAKVMNCKVICLDEADKLLGHDFKGMLDRLIEHLPERRQILLXSATFPLTVEYFMKRHMKSPYEVNLMD-ELTLKGITQYYAFVQERQKVHCLNTLFTKLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHAKMAQTHRNRVFHDFRAGLCRNLVCSDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINL 391
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BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000006912 (supercontig:LSalAtl2s:LSalAtl2s391:287461:291724:1 gene:EMLSAG00000006912 transcript:EMLSAT00000006912 description:"maker-LSalAtl2s391-augustus-gene-3.7")

HSP 1 Score: 204.527 bits (519), Expect = 8.360e-62
Identity = 131/359 (36.49%), Postives = 198/359 (55.15%), Query Frame = 0 
Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHD-KIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVS-LPDGNRVAAK 358
            SFD + L   LLR + S G+  PS IQ +AI   +   D +A AQ+GTGKTA FS+ +LQ +  S  R      +AL++ PTRELA Q+ + +   G  L    T     GG  I+  I  L+ G  ++V TPGR+ D+  +  +    I++ VLDEAD ML  GF   I  + + + +  Q +L SAT   ++  + +  + +P+ I V     T E I Q   F EK + K+  L  L E     Q ++F  T+     LTE++    F   ++HG  SQ  R   +  F+SG  R+L+ TD+ ARGID+ Q+  V+NY+LP   E+Y+HRIGR GR G+ G+A++ + +G+R+A +
Sbjct:   41 SFDDMNLKEDLLRGIYSFGFEKPSAIQQRAIVPCIKTRDAIAQAQSGTGKTATFSIAILQKIDISMNR-----TQALILAPTRELAQQIQKVVLSLGDFLKA--TCYACIGGRSISSDIRALEHGPHIVVGTPGRVFDMITREHLRTENIKMFVLDEADEMLSRGFKEQIYDVFRHLNQDIQVVLMSATMPDDVLDVTKRFMRDPIRILVRKEELTLEGILQFYVFVEKEEWKLSTLCDLYETLTITQAVIFCNTRRKVCWLTEKMGLKHFTVSSMHGEMSQEEREVIMREFRSGSSRVLITTDLLARGIDVQQISLVINYDLPVNKENYIHRIGRGGRFGRKGVAINFITEGDRMALQ 392
[Close]
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000012967 (supercontig:LSalAtl2s:LSalAtl2s98:1266421:1269115:1 gene:EMLSAG00000012967 transcript:EMLSAT00000012967 description:"maker-LSalAtl2s98-augustus-gene-12.20")

HSP 1 Score: 208.764 bits (530), Expect = 1.447e-60
Identity = 128/375 (34.13%), Postives = 200/375 (53.33%), Query Frame = 0 
Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQ--TTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDK------IRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD---GNSV 366
            F S+GL   + R ++  GY  P+PIQ + IP +L G D++  A+TG+GKT  F +PLL+ L +  + K    PRA++++PTREL+ Q      ++  EL+         + GG  +  Q A +    DVL+ATPGR + L  +  + L  I+ +V DEADR+ ++GF   +K++L  +   RQTLLFSAT  K +   A+  L +P  + +       E +   + F    D+      + +L  LI + E  Q +VF  T+H    +   L     ++  I+     +AR      F S +  +L+ TD+AARGIDI  L  V+NY  P  S+ ++HR+GR  RAG++GLA+S   G+ +A   D+    GNS 
Sbjct:   33 FQSMGLSREVFRGIQKKGYKVPTPIQRKTIPLILEGRDVVGMARTGSGKTGAFLIPLLEKLCSGNRGK----PRAMILSPTRELSLQT----LRFFKELAKFSGLKAMSILGGESMEKQFAGMHNNPDVLIATPGRFVHLCVEMNLRLDAIQYVVFDEADRLFELGFGEQLKEILGRLSDDRQTLLFSATLPKLLVEFAKAGLNDPTLVRLDVDTKIPETLS--LAFISCRDEGKPALLVHILQKLIAKEE--QTIVFLATRHHVEYIHLLLDSAEISNTYIYSQLDPSARKINTAKFTSNQCSVLLVTDLAARGIDIPLLDNVINYHFPAKSKLFIHRVGRVARAGRSGLAISFVAGDELAYMIDLQLFFGNSF 395
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BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000012588 (supercontig:LSalAtl2s:LSalAtl2s93:784098:785897:1 gene:EMLSAG00000012588 transcript:EMLSAT00000012588 description:"maker-LSalAtl2s93-augustus-gene-7.24")

HSP 1 Score: 201.83 bits (512), Expect = 2.016e-60
Identity = 136/371 (36.66%), Postives = 203/371 (54.72%), Query Frame = 0 
Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAG--NDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVD-VLVATPGRLLDLQQQ-GVISLAEIEILVLDEADRMLDM-GFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAE----KHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELP------KVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357
            SF+SL L PALL+ V   G+ +PS IQ  A+PA+LA    +++A +Q+GTGKTA F L +L  +  S        P+ L ++PT ELA Q GE   K  S+ SP  T +    G     +I R  +  D +++ TPG+ +D   +     + ++++ VLDEAD M+ M G      ++ K +    Q LLFSAT+ +++   AE ++ NPV I +     T + I Q     E    K   I  + G+I  G   Q ++F  T+  A+ L E+L K G +   + G  S + R + L+ F+ G  +IL+ T+V ARGID+ Q+  VVN++LP         E Y+HRIGRTGR GK GLA++L DG +  A
Sbjct:   61 SFESLNLKPALLKGVYGMGFNNPSKIQEMALPALLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDXS-----LNYPQVLCLSPTYELALQTGEVATKM-SQFSPELTVRYAVRG----EEIPRGSKITDHIIIGTPGKTMDWAIKFKFFDIKKVKVFVLDEADVMIAMQGHQDQSIRIQKSLSPDCQMLLFSATYDEDVMNFAENIISNPVLIRLRREEETLDNIKQYWVSCETLEAKXXAISNIYGVITIG---QAMIFCQTRKGASWLAEKLVKEGHSVGMLSGELSIDERIRMLDRFRDGMEKILITTNVMARGIDVEQVSIVVNFDLPVDVAGKADCETYLHRIGRTGRFGKKGLAINLVDGPKSMA 418
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BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000011335 (supercontig:LSalAtl2s:LSalAtl2s781:205091:212596:-1 gene:EMLSAG00000011335 transcript:EMLSAT00000011335 description:"maker-LSalAtl2s781-augustus-gene-2.34")

HSP 1 Score: 200.29 bits (508), Expect = 1.199e-56
Identity = 128/360 (35.56%), Postives = 199/360 (55.28%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVIS--LAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLIN----PVSI---EVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEE--GEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            +  D LGL P LLR  E+ G  +P+P+Q   +  +L G + +  A+TG+GKTA F+LP+L  LS     ++     ALV+TPTRELA Q+G++ +  G  L+      I+ GG  +  Q + L     +L+ATPGRL D  Q    S  L +I  LV+DEADR+L+ GF   + ++   +P +RQTLLF+AT ++ ++ L E   +N    P      E    + T   ++Q         +   L G   E  G  +Q +++                + F+++++H  K Q  R ++L  F+S   +IL+ATDVA+RG+DI Q+ YV+N+ +P  ++DYVHR+GRT RAG+ G  +SL
Sbjct:   74 LPMDILGLKPWLLRQCETIGLKAPTPVQQATVSKILKGANGVGIAKTGSGKTAAFALPILDALS-----EDPYGVFALVLTPTRELAYQIGDTFKILGKPLNVK--VSIIVGGRDMVMQGSELSTSPHILIATPGRLADHLQSITSSKLLKKIRFLVIDEADRLLEGGFDEQLSQIFTAIPSERQTLLFTATHTEALKDLIE---VNSDKQPFFYREGEDDASSLTVNTLEQYYVLTPADFRDAYLVGXDHEMPGGVSQCILYN---------------ICFSNVSLHSMKPQRERLQSLSRFRSHLAKILIATDVASRGLDIQQVEYVINHNIPTDAKDYVHRVGRTARAGRXGXXISL 408
[Close]
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000009885 (supercontig:LSalAtl2s:LSalAtl2s643:195185:200626:1 gene:EMLSAG00000009885 transcript:EMLSAT00000009885 description:"maker-LSalAtl2s643-augustus-gene-2.22")

HSP 1 Score: 187.578 bits (475), Expect = 5.167e-55
Identity = 99/231 (42.86%), Postives = 143/231 (61.90%), Query Frame = 0 
Query:  127 VDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLK----LMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGN 353
            VD+L+ATPGRLLDL  +G +SL  ++  VLDEADRMLDMGF+ ++K+++          RQTL+FSATF  E+++ A   L + V + V         + Q  Y  EK  K + L  ++++    + LVF  TK   + L   L +    + +IHG++ Q+ R +AL  F+SG+  +LV+T VAARG+DI  + +VVNY+LPK  ++YVHR+GRTGR G  G A S  DGN
Sbjct:  166 VDILIATPGRLLDLVSKGAVSLDAVQFFVLDEADRMLDMGFLPEVKRIVSEGNMCCKTSRQTLMFSATFPYEVQSCAAEFLNDYVFVTVGIVGGVNTDVKQDFYQVEKFKKRQKLKDILDDVGTLKTLVFVETKKNTDFLASWLSENNVPTTSIHGDRLQSQREQALADFRSGKYPVLVSTAVAARGLDIKGVEHVVNYDLPKTVDEYVHRVGRTGRVGNKGKATSFYDGN 396
[Close]
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000007706 (supercontig:LSalAtl2s:LSalAtl2s449:21910:24507:-1 gene:EMLSAG00000007706 transcript:EMLSAT00000007706 description:"maker-LSalAtl2s449-snap-gene-0.33")

HSP 1 Score: 191.045 bits (484), Expect = 4.647e-54
Identity = 126/358 (35.20%), Postives = 193/358 (53.91%), Query Frame = 0 
Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPR---ALVVTPTRELAAQVGESLQKYGS--ELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINP--VSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKM--GFNSMAIHGNKSQNARTKALEGFKSGE-IRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            F  + L    L+ ++ + Y  P+ IQ ++I     G+D+L AA+TG GKT  F +P+L++L     R+  T      ALV+TPTRELA Q+ E+L+K G   E S      +V GG  +  +  RL    ++++ TPGRLL  + +        ++ILVLDEADR LD+GF   +  +L  +PK+RQTLLFSAT ++ I+ L    L NP  VSI    + +T E++ Q     E   K+ +L   I+    ++ LVF  +   A    E L K+  G + + ++G   Q  R    E F   E   +L ATD+AARG+D  ++ +V   + P+  + Y+HR+GRT R    G ++ L
Sbjct:  104 FRDMPLSAYTLKGLKENNYDEPTQIQKESIGLCFRGSDVLGAAKTGCGKTLAFVIPILELLH----REKWTKLDGLGALVITPTRELAYQIFETLRKVGKHHEFSAG----LVIGGKDLQYETKRLS-TCNIVICTPGRLLQHMDENPQFDPITLQILVLDEADRCLDLGFAETMNAILGNLPKERQTLLFSATQTRSIKDLGRLSLKNPVYVSIHEHSKFSTPEKLTQNYMVCELDKKMDMLLSFIKSHRKSKTLVFVQSCKQARYFQELLKKIRVGVSVLGLYGTLHQLRRMSIYEEFCQEENSMVLFATDIAARGLDFPKVDWVFQLDCPEDGKTYLHRVGRTARHASIGKSLML 452
[Close]
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|548730|sp|P25888.3|RHLE_ECOLI (RecName: Full=ATP-dependent RNA helicase RhlE)

HSP 1 Score: 444.121 bits (1141), Expect = 3.005e-153
Identity = 223/350 (63.71%), Postives = 269/350 (76.86%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            MSFDSLGL P +LRAV   GY  P+PIQ QAIPAVL G D++A+AQTGTGKTAGF+LPLLQ L T         P RAL++TPTRELAAQ+GE+++ Y   L+    + +VFGGV INPQ+ +L+ GVDVLVATPGRLLDL+ Q  + L ++EILVLDEADRMLDMGFIHDI+++L  +P KRQ LLFSATFS +I+ LAE LL NP+ IEVA RNT ++++ Q V+F +K  K  LL  +I +G W QVLVFT TKH AN L E+L K G  S AIHGNKSQ ART+AL  FKSG+IR+LVATD+AARG+DI +LP+VVNYELP V EDYVHRIGRTGRA   G A+SL
Sbjct:    1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNI--RSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSL 348
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BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|677995702|sp|B9XXL6.1|RHPA_HELP8 (RecName: Full=DEAD-box ATP-dependent RNA helicase RhpA)

HSP 1 Score: 298.901 bits (764), Expect = 6.597e-96
Identity = 154/348 (44.25%), Postives = 222/348 (63.79%), Query Frame = 0 
Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            SF+ LGL  ++L++V  +G+TSPSPIQ +AIPAVL G D++A AQTGTGKTA F+LP++  L      KN  T  ALV+TPTRELA Q+ + + K G        T  V+GG  +  Q   +K+   V++ATPGRLLD  +   I     +++VLDE+D MLDMGF+ DI+++   +P + Q LLFSAT  + I+ LA+ +L NP+ I +AP N T   I Q+ Y   +H++   +  L++     + +VFT TK  A+ L + L    + S A+HG+  Q  R  ++  FK  +  +LVATDVA+RG+DI+ + +V NY LP  +E Y+HRIGRTGRAGK G+A++L
Sbjct:   21 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL------KNNHTIEALVITPTRELAMQISDEIFKLGKHTR--TKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL 360
[Close]
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|81815103|sp|O25029.1|RHPA_HELPY (RecName: Full=DEAD-box ATP-dependent RNA helicase RhpA)

HSP 1 Score: 298.901 bits (764), Expect = 7.671e-96
Identity = 154/348 (44.25%), Postives = 222/348 (63.79%), Query Frame = 0 
Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            SF+ LGL  ++L++V  +G+TSPSPIQ +AIPAVL G D++A AQTGTGKTA F+LP++  L      KN  T  ALV+TPTRELA Q+ + + K G        T  V+GG  +  Q   +K+   V++ATPGRLLD  +   I     +++VLDE+D MLDMGF+ DI+++   +P + Q LLFSAT  + I+ LA+ +L NP+ I +AP N T   I Q+ Y   +H++   +  L++     + +VFT TK  A+ L + L    + S A+HG+  Q  R  ++  FK  +  +LVATDVA+RG+DI+ + +V NY LP  +E Y+HRIGRTGRAGK G+A++L
Sbjct:   21 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL------KNNHTIEALVITPTRELAMQISDEIFKLGKHTR--TKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL 360
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BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363412|sp|Q9HXE5.1|RHLB_PSEAE (RecName: Full=ATP-dependent RNA helicase RhlB >gi|122261039|sp|Q02S21.1|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase RhlB >gi|226739542|sp|B7UUT0.1|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase RhlB)

HSP 1 Score: 294.664 bits (753), Expect = 1.783e-95
Identity = 154/368 (41.85%), Postives = 228/368 (61.96%), Query Frame = 0 
Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL-QILSTSG-KRKNATTPRALVVTPTRELAAQVGE---SLQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD 362
            F    L P+L+ A+   G+   +PIQAQ +   L G D +  AQTGTGKTA F + ++ Q+L T   K +    PRAL++ PTREL  Q+ +   +L KY              GG+  + Q+ +L+ R  D+LVATPGRLLD  Q+G + L  +E++VLDEADRMLDMGFI  ++++++  P K  RQTLLFSATF+ ++  LA+   ++P  +E+ P N  ++ ++Q VY     DK +LL  L+ +  W +V+VF   K    R+ ERL K G ++  + G+  Q+ R + LEGF+ G+IR+LVATDVA RGI I+ + +V+N+ LP+  +DYVHRIGRTGRAG +G ++S    +   A P ++
Sbjct:   11 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-----GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIE 373
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BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363284|sp|Q887N8.1|RHLB_PSESM (RecName: Full=ATP-dependent RNA helicase RhlB)

HSP 1 Score: 286.96 bits (733), Expect = 1.615e-92
Identity = 148/355 (41.69%), Postives = 221/355 (62.25%), Query Frame = 0 
Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSG--KRKNATTPRALVVTPTRELAAQVGES---LQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            F    L P L+ A++  G+   +PIQA  +   L G D +  AQTGTGKTA F + +++ L+ +     +    PRAL++ PTREL  Q+ +    L KY +            GG+  + Q+ +L+ R  D+LVATPGRLLD  Q+G + L  +E++VLDEADRMLDMGFI  ++++++  P K  RQTLLFSATF++++  LA+    +P  +E+   N  ++ ++Q +Y     DK +LL  L+ +  W +V+VF   K    R+ ERL + G N+  + G+  Q+ R K LEGF+ G+IR+LVATDVA RGI I+ + +V+N+ LP+V +DYVHRIGRTGRAG  G+++S 
Sbjct:   10 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTN-----LNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISF 359
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BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|74659403|sp|Q6BU54.1|DED1_DEBHA (RecName: Full=ATP-dependent RNA helicase DED1)

HSP 1 Score: 293.893 bits (751), Expect = 2.503e-92
Identity = 166/368 (45.11%), Postives = 232/368 (63.04%), Query Frame = 0 
Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL---------QILSTSGK-RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGN 353
            +F +  LDP L+  V+ S +T P+P+Q  ++P V AG D++A AQTG+GKT GF  P+L         ++  T+G    +   P ALV+ PTREL +Q+ +  +K  Y S + P+    +V+GG  I  QI  L+RG D+LVATPGRL DL ++G +SLA I+ LVLDEADRMLDMGF   I+ +++   MP  + RQTL+FSATF KEI+ LA   L   + + V    +T+E I QK+ + E  +K  +L  L+   +    ++FT TK  A+ L + L   GF + AIHG++SQ  R KAL  FK+G   ILVAT VAARG+DI  + ++VNY+LP   +DYVHRIGRTGRAG  G+A +  + N
Sbjct:  157 AFTAPPLDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAEVPETAGAFSSHKVYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPS----VVYGGADIGGQIRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVEDRQTLMFSATFPKEIQFLARDFLKEYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKTGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRTGRAGNIGIATAFFNRN 520
[Close]
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363346|sp|Q8PFZ3.1|RHLB_XANAC (RecName: Full=ATP-dependent RNA helicase RhlB)

HSP 1 Score: 291.197 bits (744), Expect = 6.214e-92
Identity = 167/412 (40.53%), Postives = 241/412 (58.50%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQ--ILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPTGNER---RPQRPRRPGQGGQGGGQRG 404
            ++F S  L PAL+  +ES+G+T  +PIQA  +P  L G D+   AQTGTGKT  F + ++   ++  +   +    PRAL++ PTRELA Q+ +   K+G++L       +V+GGV  + Q   L++GVDV++ATPGRL+D ++Q  V+SL   EI VLDEADRM D+GFI DI+ LL+ MP++  RQTLLFSAT S  +  LA   +  P  + V   + TA R+ Q++YF    +K  LL GL+   E  + +VF  TK F  R+   L + G+    + G+  Q  R   L  F+ G++ ILVATDVAARG+ I+ + YV NY+LP  +EDYVHRIGRT R G+ G A+S        + PD++       A +  +   EP  +E     P+ PR P +G +     G
Sbjct:    9 VTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL--GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIE-------AYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAG 411
[Close]
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363291|sp|Q88NB7.1|RHLB_PSEPK (RecName: Full=ATP-dependent RNA helicase RhlB)

HSP 1 Score: 284.648 bits (727), Expect = 1.412e-91
Identity = 148/355 (41.69%), Postives = 216/355 (60.85%), Query Frame = 0 
Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSG--KRKNATTPRALVVTPTRELAAQVGE---SLQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            F    L   L+ A+   G+   +PIQAQ +   L G D +  AQTGTGKTA F + ++  L  +   K +    PRAL++ PTREL  Q+ +   +L KY              GG+  + Q+  L+ R  D+LVATPGRLLD  Q+G + L  +E++VLDEADRMLDMGFI  ++++++  P K  RQTLLFSATF+ ++  LA+    NP  +E+ P N  +E ++Q VY     DK +LL  L+ + +W +V+VF   K    R+ E+L + G N+  + G+  Q+ R + LE F+ G I +LVATDVA RGI I+ + +V+N+ LP+  +DYVHRIGRTGRAG +G+++S 
Sbjct:   11 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-----GLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISF 360
[Close]
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|223590230|sp|A5DQS0.3|DED1_PICGU (RecName: Full=ATP-dependent RNA helicase DED1)

HSP 1 Score: 290.041 bits (741), Expect = 8.162e-91
Identity = 162/364 (44.51%), Postives = 226/364 (62.09%), Query Frame = 0 
Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGK----------RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            +F +  LDP ++  ++ S +T P+P+Q  ++P V +G D++A AQTG+GKT GF  P+L     +G             +   P ALV+ PTREL +Q+ E  +K  Y S + P     +V+GG  I  QI  L RG D+LVATPGRL DL ++G +SL+ I+ LVLDEADRMLDMGF   I+ +++   MP  + RQTL+FSATF ++I+ LA   L + + + V    +T+E I QKV + E  +K  +L  L+   +    ++FT TK  A+ L + L   GF + AIHG++SQ  R KAL  FKSG   ILVAT VAARG+DI  + +VVNY+LP   +DYVHRIGRTGRAG  G+A + 
Sbjct:  170 AFTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPC----VVYGGADIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDDEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAF 529
[Close]
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|122300890|sp|Q088J2.1|RHLB_SHEFN (RecName: Full=ATP-dependent RNA helicase RhlB)

HSP 1 Score: 283.878 bits (725), Expect = 8.245e-91
Identity = 165/418 (39.47%), Postives = 242/418 (57.89%), Query Frame = 0 
Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL-QILSTSG-KRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQT---TQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRPQRPRR--PGQGGQGGGQRGPGGQGRN 411
            F    L P +L A+  +G+   +PIQA ++P +L   DI   AQTGTGKT  F +     +L+ +  + + AT PRA+++ PTRELA Q+ +      ++L  A T     IV+GG     Q A L +GVD+L+ T GR++D  +QGVISL+ I+ +VLDEADRM D+GFI DI+ L + MP  K R  +LFSAT S +++ LA   + +P  +E+ P   T++ I +++++    DK+RLL  LIEE   ++ +VF+ TKH   +L   L   G     + G+  Q  R + LE F SGEI +LVATDVAARG+ I+ + +V NY+LP   EDYVHRIGRTGRAG+ G+++S          P+++   +N++  V N        +   P R  R  P    + GG +G    G N
Sbjct:   11 FADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKD-----AKLLAAHTGLKVGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLLSLIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFACEEYALNLPEIE-TYINHSIPVSNYDKDALLDDIPPPARIHRKPPTSRTRDGGSKGAHRSGGN 422
[Close]
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1198235011|ref|WP_086900249.1| (ATP-dependent RNA helicase RhlE [Kushneria marisflavi] >gi|1197437593|gb|ART63038.1| ATP-dependent RNA helicase RhlE [Kushneria marisflavi])

HSP 1 Score: 476.863 bits (1226), Expect = 1.410e-163
Identity = 237/355 (66.76%), Postives = 282/355 (79.44%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTS--GKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351
            MSF  LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS    G ++     RAL++TPTRELAAQ+GES++KYG  L P   + +V+GGVK+NPQIARL+ GVDVLVA PGRLLDL  Q  + L ++E LVLDEADRMLDMGFIHDIKK+L+L+PKKRQ LLFSATFSKEIR LA  LL NPVSI+VAPRNT AE +DQ +Y  EK  ++ LL  LI   +W+Q LVFT TKH ANR+T+ L K G  + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK   DYVHRIGRTGRAG +G AVSL  PD
Sbjct:    1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSREPQGHKRPV---RALILTPTRELAAQIGESVEKYGVHLKPRLKSDVVYGGVKVNPQIARLRDGVDVLVACPGRLLDLVNQKAVRLDQVETLVLDEADRMLDMGFIHDIKKILRLVPKKRQNLLFSATFSKEIRELAGTLLDNPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352
[Close]
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1343579608|gb|PPD49857.1| (ATP-dependent RNA helicase RhlE [Methylobacter sp.])

HSP 1 Score: 474.937 bits (1221), Expect = 1.708e-163
Identity = 239/362 (66.02%), Postives = 281/362 (77.62%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD 362
            M F +LGL   LLRA+  +GYT+PSPIQAQAIPAVL G+D+LAAAQTGTGKTAGF+LP+L  LS     KN    R L++TPTRELAAQVGES+ KYG+ L P   T+IVFGGVKINPQ+ RL+ GVD+LVATPGRLLDL  Q  + L ++E L+LDEADRMLDMGFI DI+K++ L PKKRQ LLFSATFS++IR L  GLL+NP+ IEVAPRNT AE ++Q  Y   K  K  LL  LI+  +W QVLVFTTTKH ANRLTE+L  +G  + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDI  LP+VVN+ELPKV EDYVHRIGRTGRAG+ G A+SL   + V A   V+
Sbjct:    1 MPFTTLGLSDPLLRAIADAGYTTPSPIQAQAIPAVLNGHDVLAAAQTGTGKTAGFTLPILHRLSQKSYDKNRPV-RCLILTPTRELAAQVGESVGKYGAHLHPRLKTEIVFGGVKINPQMMRLRGGVDILVATPGRLLDLLSQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIALCPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQIAYLTNKASKTGLLCHLIKTNDWQQVLVFTTTKHGANRLTEKLNNVGIKAAAIHGNKSQGARTSALAGFKAGEIRVLVATDVAARGIDIALLPHVVNFELPKVPEDYVHRIGRTGRAGEEGQAISLISHDEVNALRQVE 361
[Close]
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1348907824|ref|WP_104423713.1| (ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum] >gi|1346752325|gb|PPK71841.1| ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum])

HSP 1 Score: 474.937 bits (1221), Expect = 1.946e-163
Identity = 231/349 (66.19%), Postives = 278/349 (79.66%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            M F +LGL   LLRA+  +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L  LS      N    R L++TPTRELAAQ+GES+ KYG+ L P   +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL  Q  + L ++E L+LDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS++IR L  GLL+NP+ IEVAPRNT AE ++Q  Y   K +K  LL  LI+E +W QVLVFTTTKH ANRLTE+L K+   + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+  EDYVHRIGRTGRAG+ G A+SL
Sbjct:    1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYTNNRPV-RVLILTPTRELAAQIGESVSKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIALLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWRQVLVFTTTKHGANRLTEKLNKINIKAAAIHGNKSQGARTSALAGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348
[Close]
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1093981390|ref|WP_070979946.1| (ATP-dependent RNA helicase RhlE [Kushneria sp. YCWA18] >gi|1092294756|gb|OHV08775.1| ATP-dependent RNA helicase RhlE [Kushneria sp. YCWA18])

HSP 1 Score: 476.093 bits (1224), Expect = 2.264e-163
Identity = 257/428 (60.05%), Postives = 304/428 (71.03%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILS---TSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PDG-------NRVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRP-----QRPRRPGQGGQGGGQRGPGGQGRN 411
            MSF  LGL P LLRAVE++GY +PSPIQA+AIPA L G D+LAAAQTGTGKTAGF+LP+LQ LS    +G+R      RAL++TPTRELAAQV ES++KYG+ LSP   + +V+GGVKINPQI RL+ GVD+LVA PGRLLDL  Q  + L ++E LVLDEADRMLDMGFIHDI+K+LKL+P++RQTLLFSATFS EIR LA+ LL  PVSI+VAPRNT AE +DQ VY  +K  K  LL  LI + +  Q LVFT TKH ANR+T+ L K G  + AIHGNKSQNART AL GFKSGE+RILVATDVAARGIDI  LP+V+N+ELP V  DYVHRIGRTGRAG +G A+SL  PD         R+  KP     S N+ A           G    P     +R  RP  G +    RG GG+ RN
Sbjct:    1 MSFSELGLAPELLRAVEAAGYHTPSPIQAKAIPACLEGRDVLAAAQTGTGKTAGFTLPILQRLSRQPVTGRR----AVRALILTPTRELAAQVHESVEKYGAALSPRLESDVVYGGVKINPQINRLREGVDILVACPGRLLDLVSQKAVRLDQVETLVLDEADRMLDMGFIHDIRKILKLVPQQRQTLLFSATFSSEIRQLADKLLDQPVSIDVAPRNTAAETVDQSVYKIDKPSKTALLVHLIRQQQLEQALVFTATKHMANRVTKNLQKAGITAAAIHGNKSQNARTSALNGFKSGEVRILVATDVAARGIDIAHLPHVINFELPNVPADYVHRIGRTGRAGASGSAMSLVAPDERDQLKGIERLIGKPVPVHESKNFDARAVQEELSSAGGQTEDPGPPGQRRNARPAGGQRQQRSRGQGGRERN 424
[Close]
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1197586166|ref|WP_086621375.1| (ATP-dependent RNA helicase RhlE [Kushneria konosiri] >gi|1196021791|gb|ARS52618.1| ATP-dependent RNA helicase RhlE [Kushneria konosiri])

HSP 1 Score: 475.322 bits (1222), Expect = 5.707e-163
Identity = 237/354 (66.95%), Postives = 282/354 (79.66%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351
            MSF  LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS   K +    P RAL++TPTRELAAQ+GES++KYG  L P   + +V+GGVK+NPQIARL+ GVDVLVA PGRLLDL  Q  + L ++E LVLDEADRMLDMGFIHDIKK+L+L+PK+RQ LLFSATFSKEIR LA  LL NPVSI+VAPRNT AE +DQ +Y  EK  ++ LL  LI   +W+Q LVFT TKH ANR+T+ L K G  + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK   DYVHRIGRTGRAG +G AVSL  PD
Sbjct:    1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSR--KPQGHKRPVRALILTPTRELAAQIGESVEKYGVHLKPRLKSDVVYGGVKVNPQIARLRDGVDVLVACPGRLLDLVNQKAVRLDQVETLVLDEADRMLDMGFIHDIKKILRLVPKQRQNLLFSATFSKEIRELAGTLLNNPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352
[Close]
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1222075770|ref|WP_090132494.1| (ATP-dependent RNA helicase RhlE [Kushneria avicenniae] >gi|1097387640|emb|SFC47209.1| ATP-dependent RNA helicase RhlE [Kushneria avicenniae])

HSP 1 Score: 473.781 bits (1218), Expect = 2.043e-162
Identity = 238/356 (66.85%), Postives = 282/356 (79.21%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILST---SGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351
            MSF  LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS    SGKR      RAL++TPTRELAAQ+GES++KYG  LSP   + +V+GGVK+NPQI RL+ GVD+LVA PGRLLDL  Q  + L E+E LVLDEADRMLDMGFIHDIKK+L+L+P KRQ LLFSATFSKEIR LA  LL +PVSI+VAPRNT AE +DQ +Y  EK  ++ LL  LI   +W+Q LVFT TKH ANR+T+ L K G  + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK   DYVHRIGRTGRAG +G AVSL  PD
Sbjct:    1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSRQPRSGKRPV----RALILTPTRELAAQIGESVEKYGVHLSPRLKSDVVYGGVKVNPQITRLRDGVDILVACPGRLLDLVGQKAVRLDEVETLVLDEADRMLDMGFIHDIKKILRLVPGKRQNLLFSATFSKEIRELAGTLLNDPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352
[Close]
BLAST of atp-dependent rna helicase vs. nr
Match: gi|652888017|ref|WP_027148013.1| (ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum])

HSP 1 Score: 472.241 bits (1214), Expect = 2.346e-162
Identity = 230/349 (65.90%), Postives = 277/349 (79.37%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            M F +LGL   LLRA+  +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L  LS      N    R L++TPTRELAAQ+GES+ KYG+ L P   +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL  Q  + L ++E L+LDEADRMLDMGFI DI+K++  +PKKRQ LLFSATFS++IR L  GLL+NP+ IEVAPRNT AE ++Q  Y   K +K  LL  LI+E +W QVLVFTTTKH ANRLTE+L K+   + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+  EDYVHRIGRTGRAG+ G A+SL
Sbjct:    1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYGNNRPV-RVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348
[Close]
BLAST of atp-dependent rna helicase vs. nr
Match: gi|493946465|ref|WP_006890407.1| (RNA helicase [Methylobacter tundripaludum] >gi|344262165|gb|EGW22436.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] >gi|1346757703|gb|PPK77119.1| ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum])

HSP 1 Score: 472.241 bits (1214), Expect = 2.734e-162
Identity = 230/349 (65.90%), Postives = 277/349 (79.37%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            M F +LGL   LLRA+  +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L  LS      N    R L++TPTRELAAQ+GES+ KYG+ L P   +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL  Q  + L ++E L+LDEADRMLDMGFI DI+K++  +PKKRQ LLFSATFS++IR L  GLL+NP+ IEVAPRNT AE ++Q  Y   K +K  LL  LI+E +W QVLVFTTTKH ANRLTE+L K+   + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+  EDYVHRIGRTGRAG+ G A+SL
Sbjct:    1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYGNNRPV-RVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348
[Close]
BLAST of atp-dependent rna helicase vs. nr
Match: gi|647287549|ref|WP_025732497.1| (hypothetical protein [Carnimonas nigrificans])

HSP 1 Score: 473.396 bits (1217), Expect = 5.568e-162
Identity = 238/349 (68.19%), Postives = 279/349 (79.94%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            MSF SLGL PAL RAV+ +GYT+PSPIQA+AIP  L G D+LAAAQTGTGKTAGF+LP+LQ L+ + +R+   +PRAL++TPTRELAAQ+ ESL  Y   LSP   + +VFGGVKINPQI RL+RGVDVLVA PGRLLDL  Q  +SL  IE LVLDEADRMLDMGF+HDIK++LKL+P KRQ LLFSATFS EIRTL E +L NPVSI+VAPRN+ AE ++Q VY  +K  K  LL  LI++    QVLVFT TKH ANR+T+RL + G ++ AIHGNKSQNART+AL GFKSG I +LVATDVAARGIDI QLP V+N+ELPK + DYVHRIGRTGRAG  G AVSL
Sbjct:    1 MSFASLGLLPALKRAVDDAGYTTPSPIQAKAIPVALEGRDVLAAAQTGTGKTAGFALPILQRLALTPERQ-GKSPRALILTPTRELAAQIHESLVAYSEHLSPRLRSDVVFGGVKINPQIERLQRGVDVLVACPGRLLDLVSQKAVSLNHIETLVLDEADRMLDMGFVHDIKRILKLLPAKRQNLLFSATFSAEIRTLTESILHNPVSIDVAPRNSAAETVEQAVYKIDKPLKSALLIHLIKQQSLTQVLVFTATKHMANRVTQRLERAGISAAAIHGNKSQNARTQALAGFKSGTINVLVATDVAARGIDIAQLPNVINFELPKAAPDYVHRIGRTGRAGAEGKAVSL 348
[Close]
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1191468117|gb|OTE97297.1| (ATP-dependent RNA helicase RhlE [Crenothrix sp. D3])

HSP 1 Score: 469.544 bits (1207), Expect = 3.086e-161
Identity = 235/358 (65.64%), Postives = 278/358 (77.65%), Query Frame = 0 
Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357
            M F  LGL   LLRA+  +GYT+PSPIQ QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L  LS   K  ++  P R L++TPTRELAAQVGES+ KYG  L P   T++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL  Q  + L ++E LVLDEADRMLDMGFI DI+K++  +PKKRQ LLFSATFS++IR L  GLL+NP+ IEVA RNT AE ++Q  Y   K +K  LL  LI+  +W QVLVFT+TKH ANRLT++L K+   + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVNYELP+   DYVHRIGRTGRAG+ G AVSL   + VAA
Sbjct:    1 MPFTKLGLSDPLLRAIAEAGYTTPSPIQLQAIPAVLNGHDLLAAAQTGTGKTAGFALPILHRLSQ--KHYSSNRPIRVLILTPTRELAAQVGESVSKYGEHLHPRLKTEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVNQNAVKLDQVETLVLDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRQLTTGLLVNPIKIEVAARNTAAETVEQIAYLCNKANKAELLCHLIKTNDWQQVLVFTSTKHGANRLTDKLNKLDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNYELPRAPADYVHRIGRTGRAGEEGQAVSLVSHDEVAA 356
The following BLAST results are available for this feature:
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25
Match NameE-valueIdentityDescription
EMLSAG000000071416.899e-7235.36supercontig:LSalAtl2s:LSalAtl2s402:374905:376772:1... [more]
EMLSAG000000024582.000e-6936.06supercontig:LSalAtl2s:LSalAtl2s1472:18624:24320:1 ... [more]
EMLSAG000000114523.032e-6937.43supercontig:LSalAtl2s:LSalAtl2s790:154718:161369:1... [more]
EMLSAG000000002494.960e-6732.95supercontig:LSalAtl2s:LSalAtl2s1036:82728:88820:1 ... [more]
EMLSAG000000069128.360e-6236.49supercontig:LSalAtl2s:LSalAtl2s391:287461:291724:1... [more]
EMLSAG000000129671.447e-6034.13supercontig:LSalAtl2s:LSalAtl2s98:1266421:1269115:... [more]
EMLSAG000000125882.016e-6036.66supercontig:LSalAtl2s:LSalAtl2s93:784098:785897:1 ... [more]
EMLSAG000000113351.199e-5635.56supercontig:LSalAtl2s:LSalAtl2s781:205091:212596:-... [more]
EMLSAG000000098855.167e-5542.86supercontig:LSalAtl2s:LSalAtl2s643:195185:200626:1... [more]
EMLSAG000000077064.647e-5435.20supercontig:LSalAtl2s:LSalAtl2s449:21910:24507:-1 ... [more]

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BLAST of atp-dependent rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|548730|sp|P25888.3|RHLE_ECOLI3.005e-15363.71RecName: Full=ATP-dependent RNA helicase RhlE[more]
gi|677995702|sp|B9XXL6.1|RHPA_HELP86.597e-9644.25RecName: Full=DEAD-box ATP-dependent RNA helicase ... [more]
gi|81815103|sp|O25029.1|RHPA_HELPY7.671e-9644.25RecName: Full=DEAD-box ATP-dependent RNA helicase ... [more]
gi|32363412|sp|Q9HXE5.1|RHLB_PSEAE1.783e-9541.85RecName: Full=ATP-dependent RNA helicase RhlB >gi|... [more]
gi|32363284|sp|Q887N8.1|RHLB_PSESM1.615e-9241.69RecName: Full=ATP-dependent RNA helicase RhlB[more]
gi|74659403|sp|Q6BU54.1|DED1_DEBHA2.503e-9245.11RecName: Full=ATP-dependent RNA helicase DED1[more]
gi|32363346|sp|Q8PFZ3.1|RHLB_XANAC6.214e-9240.53RecName: Full=ATP-dependent RNA helicase RhlB[more]
gi|32363291|sp|Q88NB7.1|RHLB_PSEPK1.412e-9141.69RecName: Full=ATP-dependent RNA helicase RhlB[more]
gi|223590230|sp|A5DQS0.3|DED1_PICGU8.162e-9144.51RecName: Full=ATP-dependent RNA helicase DED1[more]
gi|122300890|sp|Q088J2.1|RHLB_SHEFN8.245e-9139.47RecName: Full=ATP-dependent RNA helicase RhlB[more]

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BLAST of atp-dependent rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1198235011|ref|WP_086900249.1|1.410e-16366.76ATP-dependent RNA helicase RhlE [Kushneria marisfl... [more]
gi|1343579608|gb|PPD49857.1|1.708e-16366.02ATP-dependent RNA helicase RhlE [Methylobacter sp.... [more]
gi|1348907824|ref|WP_104423713.1|1.946e-16366.19ATP-dependent RNA helicase RhlE [Methylobacter tun... [more]
gi|1093981390|ref|WP_070979946.1|2.264e-16360.05ATP-dependent RNA helicase RhlE [Kushneria sp. YCW... [more]
gi|1197586166|ref|WP_086621375.1|5.707e-16366.95ATP-dependent RNA helicase RhlE [Kushneria konosir... [more]
gi|1222075770|ref|WP_090132494.1|2.043e-16266.85ATP-dependent RNA helicase RhlE [Kushneria avicenn... [more]
gi|652888017|ref|WP_027148013.1|2.346e-16265.90ATP-dependent RNA helicase RhlE [Methylobacter tun... [more]
gi|493946465|ref|WP_006890407.1|2.734e-16265.90RNA helicase [Methylobacter tundripaludum] >gi|344... [more]
gi|647287549|ref|WP_025732497.1|5.568e-16268.19hypothetical protein [Carnimonas nigrificans][more]
gi|1191468117|gb|OTE97297.1|3.086e-16165.64ATP-dependent RNA helicase RhlE [Crenothrix sp. D3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1_size3401120supercontigscaffold1_size3401120:989238..990893 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold1_size3401120-processed-gene-10.1-mRNA-1snap_masked-scaffold1_size3401120-processed-gene-10.1-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1_size3401120:989238..990893-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold1_size3401120-processed-gene-10.1 ID=snap_masked-scaffold1_size3401120-processed-gene-10.1|Name=atp-dependent rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=1656bp|location=Sequence derived from alignment at scaffold1_size3401120:989238..990893- (Tigriopus kingsejongensis)
ATGTCATTTGATTCTCTGGGCCTCGACCCAGCTTTGCTCCGTGCTGTTGA
GAGCTCGGGCTACACTTCGCCTTCGCCCATACAGGCGCAAGCCATACCGG
CGGTGCTCGCCGGAAACGACATCCTCGCTGCCGCACAGACTGGCACTGGG
AAAACTGCTGGATTCAGCCTGCCCTTACTGCAGATACTGTCCACCAGCGG
TAAACGCAAAAATGCGACTACTCCACGAGCACTGGTAGTCACCCCCACAC
GCGAGCTAGCCGCACAAGTGGGCGAGTCTCTGCAGAAGTACGGCAGCGAA
CTCAGCCCAGCCCAGACAACTCAAATTGTCTTCGGTGGCGTCAAGATCAA
CCCACAGATTGCCCGCCTCAAACGCGGCGTGGATGTCCTGGTTGCCACAC
CGGGTCGCCTTCTGGACTTGCAGCAACAGGGCGTGATCTCTTTAGCTGAG
ATCGAGATACTGGTTCTGGATGAAGCGGATCGCATGCTGGACATGGGTTT
TATCCATGACATCAAGAAGCTGCTCAAGCTAATGCCTAAAAAGCGCCAGA
CTTTGCTGTTCTCTGCGACCTTCTCAAAAGAAATTCGCACACTAGCTGAG
GGGCTGTTGATCAACCCCGTATCTATCGAAGTCGCGCCGCGTAACACCAC
GGCTGAGCGTATCGATCAGAAAGTCTACTTCGCCGAAAAGCACGACAAAA
TTCGCCTGTTAGGCGGGTTAATCGAGGAAGGTGAATGGAACCAGGTGCTG
GTCTTCACCACCACCAAACATTTTGCCAATCGCCTCACTGAGCGCCTGTG
CAAGATGGGCTTCAACAGCATGGCGATTCACGGCAACAAGAGCCAAAACG
CACGCACGAAAGCGCTGGAAGGCTTCAAGAGCGGTGAGATTCGCATACTG
GTTGCAACCGATGTCGCTGCGCGCGGTATCGACATCAACCAACTGCCTTA
CGTAGTCAACTACGAACTGCCGAAAGTCTCAGAAGACTATGTGCACCGTA
TTGGTCGTACCGGACGTGCCGGCAAAGCGGGCTTAGCCGTATCACTGGTG
AGTCGCGAAGAGCAAAATCTGCTGCGCTCAGTACAACGCGTCATCAAAAC
TGAAATCCCTGTCGGCACGTTGGATGGCTTTGAGCCTAGCGATGCGCCAC
CCAAGTCAGAGCAAGCTGAGCGCCCTCGCGGGCAACGCAATGCACAAGGC
AGCGGCCGAGGCAGAAATGCCAACGCGAGTGGTCGAAGCAACAGCAGCAG
TGGAAGCAGCAACAGCAATAGCCGTGGCAAATCCAACAGCTCTGGCCGCT
CTGCACAGACCGCTGAGAAGAGCGCTTCAGCCGAAGGTTCGTCGTCTAAT
CGTCGCAACAACGGCCCAAAACCAGCCCGCAAACCTCGGCCGGCCAATAG
CGAAGCCAAACCGCGTAGCGCCCCTCGCCCCACTAACCCTAACTCCGCTG
AGCCCGACGGCAATCGCGTCGCCGCCAAGCCAGATGTAGATGGCAACAGC
GTGAACTACACAGCTGATGTGGGTAATCGCCCCGCTTACGAGCCTACCGG
TAACGAGCGACGCCCGCAGCGTCCTCGTCGCCCTGGCCAAGGCGGACAAG
GCGGTGGCCAGCGTGGCCCAGGTGGTCAGGGCAGGAATCGTAACCGCTCT
GCCTAA
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Synonyms
The feature 'atp-dependent rna helicase' has the following synonyms
Synonym
Tk04876
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