atp-dependent rna helicase, snap_masked-scaffold1_size3401120-processed-gene-10.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000007141 (supercontig:LSalAtl2s:LSalAtl2s402:374905:376772:1 gene:EMLSAG00000007141 transcript:EMLSAT00000007141 description:"maker-LSalAtl2s402-augustus-gene-4.12") HSP 1 Score: 230.335 bits (586), Expect = 6.899e-72 Identity = 128/362 (35.36%), Postives = 201/362 (55.52%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHD-KIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD 362 +FDS+GL LLR + + G+ PS IQ ++I +L G D++A AQ+GTGKTA FS+ +LQ + T+ + + LV++PTRELA Q+ + L G ++ GG + I +L G V+ TPGR+ D+ ++ + I++LVLDEAD ML+ GF I + + +P Q L SAT EI + + +P+ I V T E Q E+ + K L L + Q ++F TK + LTE++ + F ++HG+ Q R ++ F+SG+ R+L+ TDV ARGID+ Q+ V+NY+LP E Y+HRIGR+GR G+ G+A++ + + D++ Sbjct: 29 TFDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQSIDTTMRE-----TQCLVLSPTRELAVQIQKVLLALGDYMNVQ--CHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQIALISATLPHEILEMTSKFMADPIRILVKRDELTLEGXKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIE 383
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000002458 (supercontig:LSalAtl2s:LSalAtl2s1472:18624:24320:1 gene:EMLSAG00000002458 transcript:EMLSAT00000002458 description:"maker-LSalAtl2s1472-snap-gene-0.14") HSP 1 Score: 237.269 bits (604), Expect = 2.000e-69 Identity = 128/355 (36.06%), Postives = 206/355 (58.03%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKR---KNATTPRALVVTPTRELAAQVGESLQKYGSELS----PAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 SF + +++A++ G P+ IQ Q IPAVL+G D++ A TG+GK+ F LP++ KR P L+V P+RELA Q+ ES+ Y S L P + + GG + + +K+GV ++VATPGRL+DL + +++L L LDEADRM+DMGF D++ + +RQTLLFSAT K+I+ A+ L+ P+++ V + I Q+V + + K+ + ++++ VL+F K + + E L G +++++HG K Q+ R+KA+ F++ +LVATDVA++G+D + +V+NY++P E+YVHRIGRTGR G A ++ Sbjct: 974 SFQDMKFPLPIIKALKEKGIERPTSIQMQGIPAVLSGRDLIGIAYTGSGKSLVFILPIVMFCLEQEKRLPFVQNEGPYGLIVVPSRELAKQIHESIYSYFSYLKKNSFPEIRSCLAIGGTSSSETMDVVKKGVHIVVATPGRLMDLLNKKMLNLEICRYLCLDEADRMIDMGFEEDVRTIFSYFKGQRQTLLFSATMPKKIQNFAQSALVKPITVNVGRAGAASMNIIQEVEYVKSEAKVVHIIEMLKKTP-PPVLIFAERKQDVDAIHEYLLLKGVSAVSVHGGKDQDDRSKAVTDFRNLRKDVLVATDVASKGLDFPCIQHVINYDMPDDIENYVHRIGRTGRGNFKGYATTM 1327
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000011452 (supercontig:LSalAtl2s:LSalAtl2s790:154718:161369:1 gene:EMLSAG00000011452 transcript:EMLSAT00000011452 description:"maker-LSalAtl2s790-augustus-gene-1.30") HSP 1 Score: 232.261 bits (591), Expect = 3.032e-69 Identity = 131/350 (37.43%), Postives = 192/350 (54.86%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEK--HDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 SF G D LL+++ S +T P+PIQ+ IP L+G D + A+TG+GKTA F P++ + N P AL++ PTRELA Q+ +K+G +GG Q + G ++ +ATPGR++D+ + V +L + LVLDEADRM DMGF ++ + + RQTLLFSATF K++ LA +L +P+ + +E + Q V EK + +L L+E VL+F T K L + L F IHG+ +Q+ R + + FK + ILVATDVAARG+DI + V+NY++ + + + HRIGRTGRAG G A +L Sbjct: 277 SFGHFGFDEVLLKSIRKSEFTQPTPIQSIGIPVCLSGRDAIGIAKTGSGKTATFLWPIIIHIQHQRPLLNGEGPIALILVPTRELALQIYTEAKKFGKVYD--LNAVCAYGGGSKWEQSKCFESGAEIAIATPGRMIDMIKMKVTNLQRVTYLVLDEADRMFDMGFEAQVRSICDHVRPDRQTLLFSATFKKKVEKLARDVLTDPIKVVQGSIGEASEDVTQIVKVLEKGGYKWEWVLQNLVEFTSAGSVLIFVTKKLNCEELAQNLKLKEFECELIHGDLNQHVRNEIIYKFKKKQFPILVATDVAARGLDIPHIRTVLNYDIARDIDTHTHRIGRTGRAGIKGTAYTL 624
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000000249 (supercontig:LSalAtl2s:LSalAtl2s1036:82728:88820:1 gene:EMLSAG00000000249 transcript:EMLSAT00000000249 description:"maker-LSalAtl2s1036-augustus-gene-0.32") HSP 1 Score: 218.779 bits (556), Expect = 4.960e-67 Identity = 115/349 (32.95%), Postives = 194/349 (55.59%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVF--GGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 F+ L L + G+ PSPIQ +IP L+G DILA A+ GTGKT +S+P+L+ + S + +++ PTRELA Q + ELS + +++ GG + I R+ V ++VATPGR+LDL ++GV + +++ LDEAD++L F + +L++ +P++RQ LL SATF + + + +P + + T + I Q F ++ K+ L L + + NQ ++F + L +++ ++G++ IH +Q R + F++G R LV +D+ RGIDI + V+N++ PK++E Y+HRIGR+GR G G+A++L Sbjct: 53 FEDFCLKRETLMGIFEKGWEKPSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPILEQIDPSND-----VIQGMIIVPTRELALQTSQ----ICIELSKHRNVKVMVTTGGTNLKEDIMRIYEKVHLVVATPGRILDLIEKGVAKVMNCKVICLDEADKLLGHDFKGMLDRLIEHLPERRQILLXSATFPLTVEYFMKRHMKSPYEVNLMD-ELTLKGITQYYAFVQERQKVHCLNTLFTKLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHAKMAQTHRNRVFHDFRAGLCRNLVCSDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINL 391
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000006912 (supercontig:LSalAtl2s:LSalAtl2s391:287461:291724:1 gene:EMLSAG00000006912 transcript:EMLSAT00000006912 description:"maker-LSalAtl2s391-augustus-gene-3.7") HSP 1 Score: 204.527 bits (519), Expect = 8.360e-62 Identity = 131/359 (36.49%), Postives = 198/359 (55.15%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHD-KIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVS-LPDGNRVAAK 358 SFD + L LLR + S G+ PS IQ +AI + D +A AQ+GTGKTA FS+ +LQ + S R +AL++ PTRELA Q+ + + G L T GG I+ I L+ G ++V TPGR+ D+ + + I++ VLDEAD ML GF I + + + + Q +L SAT ++ + + + +P+ I V T E I Q F EK + K+ L L E Q ++F T+ LTE++ F ++HG SQ R + F+SG R+L+ TD+ ARGID+ Q+ V+NY+LP E+Y+HRIGR GR G+ G+A++ + +G+R+A + Sbjct: 41 SFDDMNLKEDLLRGIYSFGFEKPSAIQQRAIVPCIKTRDAIAQAQSGTGKTATFSIAILQKIDISMNR-----TQALILAPTRELAQQIQKVVLSLGDFLKA--TCYACIGGRSISSDIRALEHGPHIVVGTPGRVFDMITREHLRTENIKMFVLDEADEMLSRGFKEQIYDVFRHLNQDIQVVLMSATMPDDVLDVTKRFMRDPIRILVRKEELTLEGILQFYVFVEKEEWKLSTLCDLYETLTITQAVIFCNTRRKVCWLTEKMGLKHFTVSSMHGEMSQEEREVIMREFRSGSSRVLITTDLLARGIDVQQISLVINYDLPVNKENYIHRIGRGGRFGRKGVAINFITEGDRMALQ 392
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000012967 (supercontig:LSalAtl2s:LSalAtl2s98:1266421:1269115:1 gene:EMLSAG00000012967 transcript:EMLSAT00000012967 description:"maker-LSalAtl2s98-augustus-gene-12.20") HSP 1 Score: 208.764 bits (530), Expect = 1.447e-60 Identity = 128/375 (34.13%), Postives = 200/375 (53.33%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQ--TTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDK------IRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD---GNSV 366 F S+GL + R ++ GY P+PIQ + IP +L G D++ A+TG+GKT F +PLL+ L + + K PRA++++PTREL+ Q ++ EL+ + GG + Q A + DVL+ATPGR + L + + L I+ +V DEADR+ ++GF +K++L + RQTLLFSAT K + A+ L +P + + E + + F D+ + +L LI + E Q +VF T+H + L ++ I+ +AR F S + +L+ TD+AARGIDI L V+NY P S+ ++HR+GR RAG++GLA+S G+ +A D+ GNS Sbjct: 33 FQSMGLSREVFRGIQKKGYKVPTPIQRKTIPLILEGRDVVGMARTGSGKTGAFLIPLLEKLCSGNRGK----PRAMILSPTRELSLQT----LRFFKELAKFSGLKAMSILGGESMEKQFAGMHNNPDVLIATPGRFVHLCVEMNLRLDAIQYVVFDEADRLFELGFGEQLKEILGRLSDDRQTLLFSATLPKLLVEFAKAGLNDPTLVRLDVDTKIPETLS--LAFISCRDEGKPALLVHILQKLIAKEE--QTIVFLATRHHVEYIHLLLDSAEISNTYIYSQLDPSARKINTAKFTSNQCSVLLVTDLAARGIDIPLLDNVINYHFPAKSKLFIHRVGRVARAGRSGLAISFVAGDELAYMIDLQLFFGNSF 395
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000012588 (supercontig:LSalAtl2s:LSalAtl2s93:784098:785897:1 gene:EMLSAG00000012588 transcript:EMLSAT00000012588 description:"maker-LSalAtl2s93-augustus-gene-7.24") HSP 1 Score: 201.83 bits (512), Expect = 2.016e-60 Identity = 136/371 (36.66%), Postives = 203/371 (54.72%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAG--NDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVD-VLVATPGRLLDLQQQ-GVISLAEIEILVLDEADRMLDM-GFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAE----KHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELP------KVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 SF+SL L PALL+ V G+ +PS IQ A+PA+LA +++A +Q+GTGKTA F L +L + S P+ L ++PT ELA Q GE K S+ SP T + G +I R + D +++ TPG+ +D + + ++++ VLDEAD M+ M G ++ K + Q LLFSAT+ +++ AE ++ NPV I + T + I Q E K I + G+I G Q ++F T+ A+ L E+L K G + + G S + R + L+ F+ G +IL+ T+V ARGID+ Q+ VVN++LP E Y+HRIGRTGR GK GLA++L DG + A Sbjct: 61 SFESLNLKPALLKGVYGMGFNNPSKIQEMALPALLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDXS-----LNYPQVLCLSPTYELALQTGEVATKM-SQFSPELTVRYAVRG----EEIPRGSKITDHIIIGTPGKTMDWAIKFKFFDIKKVKVFVLDEADVMIAMQGHQDQSIRIQKSLSPDCQMLLFSATYDEDVMNFAENIISNPVLIRLRREEETLDNIKQYWVSCETLEAKXXAISNIYGVITIG---QAMIFCQTRKGASWLAEKLVKEGHSVGMLSGELSIDERIRMLDRFRDGMEKILITTNVMARGIDVEQVSIVVNFDLPVDVAGKADCETYLHRIGRTGRFGKKGLAINLVDGPKSMA 418
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000011335 (supercontig:LSalAtl2s:LSalAtl2s781:205091:212596:-1 gene:EMLSAG00000011335 transcript:EMLSAT00000011335 description:"maker-LSalAtl2s781-augustus-gene-2.34") HSP 1 Score: 200.29 bits (508), Expect = 1.199e-56 Identity = 128/360 (35.56%), Postives = 199/360 (55.28%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVIS--LAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLIN----PVSI---EVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEE--GEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 + D LGL P LLR E+ G +P+P+Q + +L G + + A+TG+GKTA F+LP+L LS ++ ALV+TPTRELA Q+G++ + G L+ I+ GG + Q + L +L+ATPGRL D Q S L +I LV+DEADR+L+ GF + ++ +P +RQTLLF+AT ++ ++ L E +N P E + T ++Q + L G E G +Q +++ + F+++++H K Q R ++L F+S +IL+ATDVA+RG+DI Q+ YV+N+ +P ++DYVHR+GRT RAG+ G +SL Sbjct: 74 LPMDILGLKPWLLRQCETIGLKAPTPVQQATVSKILKGANGVGIAKTGSGKTAAFALPILDALS-----EDPYGVFALVLTPTRELAYQIGDTFKILGKPLNVK--VSIIVGGRDMVMQGSELSTSPHILIATPGRLADHLQSITSSKLLKKIRFLVIDEADRLLEGGFDEQLSQIFTAIPSERQTLLFTATHTEALKDLIE---VNSDKQPFFYREGEDDASSLTVNTLEQYYVLTPADFRDAYLVGXDHEMPGGVSQCILYN---------------ICFSNVSLHSMKPQRERLQSLSRFRSHLAKILIATDVASRGLDIQQVEYVINHNIPTDAKDYVHRVGRTARAGRXGXXISL 408
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000009885 (supercontig:LSalAtl2s:LSalAtl2s643:195185:200626:1 gene:EMLSAG00000009885 transcript:EMLSAT00000009885 description:"maker-LSalAtl2s643-augustus-gene-2.22") HSP 1 Score: 187.578 bits (475), Expect = 5.167e-55 Identity = 99/231 (42.86%), Postives = 143/231 (61.90%), Query Frame = 0 Query: 127 VDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLK----LMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGN 353 VD+L+ATPGRLLDL +G +SL ++ VLDEADRMLDMGF+ ++K+++ RQTL+FSATF E+++ A L + V + V + Q Y EK K + L ++++ + LVF TK + L L + + +IHG++ Q+ R +AL F+SG+ +LV+T VAARG+DI + +VVNY+LPK ++YVHR+GRTGR G G A S DGN Sbjct: 166 VDILIATPGRLLDLVSKGAVSLDAVQFFVLDEADRMLDMGFLPEVKRIVSEGNMCCKTSRQTLMFSATFPYEVQSCAAEFLNDYVFVTVGIVGGVNTDVKQDFYQVEKFKKRQKLKDILDDVGTLKTLVFVETKKNTDFLASWLSENNVPTTSIHGDRLQSQREQALADFRSGKYPVLVSTAVAARGLDIKGVEHVVNYDLPKTVDEYVHRVGRTGRVGNKGKATSFYDGN 396
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000007706 (supercontig:LSalAtl2s:LSalAtl2s449:21910:24507:-1 gene:EMLSAG00000007706 transcript:EMLSAT00000007706 description:"maker-LSalAtl2s449-snap-gene-0.33") HSP 1 Score: 191.045 bits (484), Expect = 4.647e-54 Identity = 126/358 (35.20%), Postives = 193/358 (53.91%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPR---ALVVTPTRELAAQVGESLQKYGS--ELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINP--VSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKM--GFNSMAIHGNKSQNARTKALEGFKSGE-IRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 F + L L+ ++ + Y P+ IQ ++I G+D+L AA+TG GKT F +P+L++L R+ T ALV+TPTRELA Q+ E+L+K G E S +V GG + + RL ++++ TPGRLL + + ++ILVLDEADR LD+GF + +L +PK+RQTLLFSAT ++ I+ L L NP VSI + +T E++ Q E K+ +L I+ ++ LVF + A E L K+ G + + ++G Q R E F E +L ATD+AARG+D ++ +V + P+ + Y+HR+GRT R G ++ L Sbjct: 104 FRDMPLSAYTLKGLKENNYDEPTQIQKESIGLCFRGSDVLGAAKTGCGKTLAFVIPILELLH----REKWTKLDGLGALVITPTRELAYQIFETLRKVGKHHEFSAG----LVIGGKDLQYETKRLS-TCNIVICTPGRLLQHMDENPQFDPITLQILVLDEADRCLDLGFAETMNAILGNLPKERQTLLFSATQTRSIKDLGRLSLKNPVYVSIHEHSKFSTPEKLTQNYMVCELDKKMDMLLSFIKSHRKSKTLVFVQSCKQARYFQELLKKIRVGVSVLGLYGTLHQLRRMSIYEEFCQEENSMVLFATDIAARGLDFPKVDWVFQLDCPEDGKTYLHRVGRTARHASIGKSLML 452
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|548730|sp|P25888.3|RHLE_ECOLI (RecName: Full=ATP-dependent RNA helicase RhlE) HSP 1 Score: 444.121 bits (1141), Expect = 3.005e-153 Identity = 223/350 (63.71%), Postives = 269/350 (76.86%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 MSFDSLGL P +LRAV GY P+PIQ QAIPAVL G D++A+AQTGTGKTAGF+LPLLQ L T P RAL++TPTRELAAQ+GE+++ Y L+ + +VFGGV INPQ+ +L+ GVDVLVATPGRLLDL+ Q + L ++EILVLDEADRMLDMGFIHDI+++L +P KRQ LLFSATFS +I+ LAE LL NP+ IEVA RNT ++++ Q V+F +K K LL +I +G W QVLVFT TKH AN L E+L K G S AIHGNKSQ ART+AL FKSG+IR+LVATD+AARG+DI +LP+VVNYELP V EDYVHRIGRTGRA G A+SL Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNI--RSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSL 348
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|677995702|sp|B9XXL6.1|RHPA_HELP8 (RecName: Full=DEAD-box ATP-dependent RNA helicase RhpA) HSP 1 Score: 298.901 bits (764), Expect = 6.597e-96 Identity = 154/348 (44.25%), Postives = 222/348 (63.79%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 SF+ LGL ++L++V +G+TSPSPIQ +AIPAVL G D++A AQTGTGKTA F+LP++ L KN T ALV+TPTRELA Q+ + + K G T V+GG + Q +K+ V++ATPGRLLD + I +++VLDE+D MLDMGF+ DI+++ +P + Q LLFSAT + I+ LA+ +L NP+ I +AP N T I Q+ Y +H++ + L++ + +VFT TK A+ L + L + S A+HG+ Q R ++ FK + +LVATDVA+RG+DI+ + +V NY LP +E Y+HRIGRTGRAGK G+A++L Sbjct: 21 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL------KNNHTIEALVITPTRELAMQISDEIFKLGKHTR--TKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL 360
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|81815103|sp|O25029.1|RHPA_HELPY (RecName: Full=DEAD-box ATP-dependent RNA helicase RhpA) HSP 1 Score: 298.901 bits (764), Expect = 7.671e-96 Identity = 154/348 (44.25%), Postives = 222/348 (63.79%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 SF+ LGL ++L++V +G+TSPSPIQ +AIPAVL G D++A AQTGTGKTA F+LP++ L KN T ALV+TPTRELA Q+ + + K G T V+GG + Q +K+ V++ATPGRLLD + I +++VLDE+D MLDMGF+ DI+++ +P + Q LLFSAT + I+ LA+ +L NP+ I +AP N T I Q+ Y +H++ + L++ + +VFT TK A+ L + L + S A+HG+ Q R ++ FK + +LVATDVA+RG+DI+ + +V NY LP +E Y+HRIGRTGRAGK G+A++L Sbjct: 21 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL------KNNHTIEALVITPTRELAMQISDEIFKLGKHTR--TKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL 360
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363412|sp|Q9HXE5.1|RHLB_PSEAE (RecName: Full=ATP-dependent RNA helicase RhlB >gi|122261039|sp|Q02S21.1|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase RhlB >gi|226739542|sp|B7UUT0.1|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 294.664 bits (753), Expect = 1.783e-95 Identity = 154/368 (41.85%), Postives = 228/368 (61.96%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL-QILSTSG-KRKNATTPRALVVTPTRELAAQVGE---SLQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD 362 F L P+L+ A+ G+ +PIQAQ + L G D + AQTGTGKTA F + ++ Q+L T K + PRAL++ PTREL Q+ + +L KY GG+ + Q+ +L+ R D+LVATPGRLLD Q+G + L +E++VLDEADRMLDMGFI ++++++ P K RQTLLFSATF+ ++ LA+ ++P +E+ P N ++ ++Q VY DK +LL L+ + W +V+VF K R+ ERL K G ++ + G+ Q+ R + LEGF+ G+IR+LVATDVA RGI I+ + +V+N+ LP+ +DYVHRIGRTGRAG +G ++S + A P ++ Sbjct: 11 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-----GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIE 373
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363284|sp|Q887N8.1|RHLB_PSESM (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 286.96 bits (733), Expect = 1.615e-92 Identity = 148/355 (41.69%), Postives = 221/355 (62.25%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSG--KRKNATTPRALVVTPTRELAAQVGES---LQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 F L P L+ A++ G+ +PIQA + L G D + AQTGTGKTA F + +++ L+ + + PRAL++ PTREL Q+ + L KY + GG+ + Q+ +L+ R D+LVATPGRLLD Q+G + L +E++VLDEADRMLDMGFI ++++++ P K RQTLLFSATF++++ LA+ +P +E+ N ++ ++Q +Y DK +LL L+ + W +V+VF K R+ ERL + G N+ + G+ Q+ R K LEGF+ G+IR+LVATDVA RGI I+ + +V+N+ LP+V +DYVHRIGRTGRAG G+++S Sbjct: 10 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTN-----LNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISF 359
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|74659403|sp|Q6BU54.1|DED1_DEBHA (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 293.893 bits (751), Expect = 2.503e-92 Identity = 166/368 (45.11%), Postives = 232/368 (63.04%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL---------QILSTSGK-RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGN 353 +F + LDP L+ V+ S +T P+P+Q ++P V AG D++A AQTG+GKT GF P+L ++ T+G + P ALV+ PTREL +Q+ + +K Y S + P+ +V+GG I QI L+RG D+LVATPGRL DL ++G +SLA I+ LVLDEADRMLDMGF I+ +++ MP + RQTL+FSATF KEI+ LA L + + V +T+E I QK+ + E +K +L L+ + ++FT TK A+ L + L GF + AIHG++SQ R KAL FK+G ILVAT VAARG+DI + ++VNY+LP +DYVHRIGRTGRAG G+A + + N Sbjct: 157 AFTAPPLDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAEVPETAGAFSSHKVYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPS----VVYGGADIGGQIRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVEDRQTLMFSATFPKEIQFLARDFLKEYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKTGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRTGRAGNIGIATAFFNRN 520
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363346|sp|Q8PFZ3.1|RHLB_XANAC (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 291.197 bits (744), Expect = 6.214e-92 Identity = 167/412 (40.53%), Postives = 241/412 (58.50%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQ--ILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPTGNER---RPQRPRRPGQGGQGGGQRG 404 ++F S L PAL+ +ES+G+T +PIQA +P L G D+ AQTGTGKT F + ++ ++ + + PRAL++ PTRELA Q+ + K+G++L +V+GGV + Q L++GVDV++ATPGRL+D ++Q V+SL EI VLDEADRM D+GFI DI+ LL+ MP++ RQTLLFSAT S + LA + P + V + TA R+ Q++YF +K LL GL+ E + +VF TK F R+ L + G+ + G+ Q R L F+ G++ ILVATDVAARG+ I+ + YV NY+LP +EDYVHRIGRT R G+ G A+S + PD++ A + + EP +E P+ PR P +G + G Sbjct: 9 VTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL--GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIE-------AYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAG 411
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363291|sp|Q88NB7.1|RHLB_PSEPK (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 284.648 bits (727), Expect = 1.412e-91 Identity = 148/355 (41.69%), Postives = 216/355 (60.85%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSG--KRKNATTPRALVVTPTRELAAQVGE---SLQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 F L L+ A+ G+ +PIQAQ + L G D + AQTGTGKTA F + ++ L + K + PRAL++ PTREL Q+ + +L KY GG+ + Q+ L+ R D+LVATPGRLLD Q+G + L +E++VLDEADRMLDMGFI ++++++ P K RQTLLFSATF+ ++ LA+ NP +E+ P N +E ++Q VY DK +LL L+ + +W +V+VF K R+ E+L + G N+ + G+ Q+ R + LE F+ G I +LVATDVA RGI I+ + +V+N+ LP+ +DYVHRIGRTGRAG +G+++S Sbjct: 11 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-----GLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISF 360
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|223590230|sp|A5DQS0.3|DED1_PICGU (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 290.041 bits (741), Expect = 8.162e-91 Identity = 162/364 (44.51%), Postives = 226/364 (62.09%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGK----------RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 +F + LDP ++ ++ S +T P+P+Q ++P V +G D++A AQTG+GKT GF P+L +G + P ALV+ PTREL +Q+ E +K Y S + P +V+GG I QI L RG D+LVATPGRL DL ++G +SL+ I+ LVLDEADRMLDMGF I+ +++ MP + RQTL+FSATF ++I+ LA L + + + V +T+E I QKV + E +K +L L+ + ++FT TK A+ L + L GF + AIHG++SQ R KAL FKSG ILVAT VAARG+DI + +VVNY+LP +DYVHRIGRTGRAG G+A + Sbjct: 170 AFTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPC----VVYGGADIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDDEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAF 529
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|122300890|sp|Q088J2.1|RHLB_SHEFN (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 283.878 bits (725), Expect = 8.245e-91 Identity = 165/418 (39.47%), Postives = 242/418 (57.89%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL-QILSTSG-KRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQT---TQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRPQRPRR--PGQGGQGGGQRGPGGQGRN 411 F L P +L A+ +G+ +PIQA ++P +L DI AQTGTGKT F + +L+ + + + AT PRA+++ PTRELA Q+ + ++L A T IV+GG Q A L +GVD+L+ T GR++D +QGVISL+ I+ +VLDEADRM D+GFI DI+ L + MP K R +LFSAT S +++ LA + +P +E+ P T++ I +++++ DK+RLL LIEE ++ +VF+ TKH +L L G + G+ Q R + LE F SGEI +LVATDVAARG+ I+ + +V NY+LP EDYVHRIGRTGRAG+ G+++S P+++ +N++ V N + P R R P + GG +G G N Sbjct: 11 FADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKD-----AKLLAAHTGLKVGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLLSLIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFACEEYALNLPEIE-TYINHSIPVSNYDKDALLDDIPPPARIHRKPPTSRTRDGGSKGAHRSGGN 422
BLAST of atp-dependent rna helicase vs. nr
Match: gi|738295302|ref|WP_036248925.1| (ATP-dependent RNA helicase RhlE [Methylobacter sp. BBA5.1]) HSP 1 Score: 466.463 bits (1199), Expect = 4.389e-160 Identity = 237/358 (66.20%), Postives = 279/358 (77.93%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 MSF +LGL LLRA+ +GYT PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS K A P R L++TPTRELAAQVGES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL Q + L ++E LVLDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS +IR L GLL+NPV IEVAPRNT AE ++Q VY K K LL LI+E +W QVLVFT+TKH ANRLTE+L K + AIHGNKSQ ART AL GFK+GE+R+LVATDVAARGIDI LP+VVN+ELP+ DYVHRIGRTGRAG+ G AVSL + +A Sbjct: 1 MSFSTLGLSDPLLRAIAEAGYTRPSPIQSQAIPAVLKGHDLLAAAQTGTGKTAGFTLPILHRLSE--KSYGANRPIRVLILTPTRELAAQVGESVAKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVNQNAVKLDKVETLVLDEADRMLDMGFIRDIRKIIALLPKKRQNLLFSATFSDDIRKLTTGLLVNPVKIEVAPRNTAAELVEQIVYTVNKPQKAELLCRLIKENDWRQVLVFTSTKHGANRLTEKLNKTDIKAAAIHGNKSQGARTSALAGFKAGELRVLVATDVAARGIDIALLPHVVNFELPRAPADYVHRIGRTGRAGEEGQAVSLVSHDEYSA 356
BLAST of atp-dependent rna helicase vs. nr
Match: gi|496588293|ref|WP_009286911.1| (MULTISPECIES: DEAD-like helicase [Halomonas] >gi|445565565|gb|ELY21674.1| DEAD-like helicase [Halomonas titanicae BH1] >gi|532588911|emb|CDG55047.1| ATP-dependent RNA helicase RhlE [Halomonas sp. A3H3] >gi|751766565|gb|KIN14394.1| ATP-dependent RNA helicase RhlE [Halomonas sp. KHS3] >gi|1087014153|emb|SDI61871.1| ATP-dependent RNA helicase RhlE [Halomonas sp. DSM 26667] >gi|1305099611|gb|PKH61256.1| ATP-dependent RNA helicase RhlE [Halomonas sp. Choline-3u-9]) HSP 1 Score: 466.463 bits (1199), Expect = 4.518e-160 Identity = 249/416 (59.86%), Postives = 301/416 (72.36%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPT------------GNERRPQRPRRP-GQGGQGGGQR 403 MSF LGL LLRAV + GYT P+PIQ QAIP VL G D+LA+AQTGTGKTAGF+LP+LQ L+T GKR RALV+TPTRELAAQVGES+ YG L A + I+FGGV PQI LK G+DVLVATPGRLLDL QQG + L+ +EILVLDEADRMLDMGFIHDIK+LL+L+PKKRQ LLFSATFS EI+TLA+ LL NP IEVAPRN TA++I+Q +Y ++ K LL LI++ W QVLVFT TKH ANRL E+L K SMAIHGNKSQ ART+AL FKSG++++LVATD+AARG+DIN+LP+VVN++LP V+EDYVHRIGRTGRAG G AVSL + A +++ + P +EP N+R+P+ R+P GQ GG+R Sbjct: 1 MSFSELGLHADLLRAVTAQGYTEPTPIQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQRLNT-GKRPTKRQVRALVLTPTRELAAQVGESVSTYGQHL--ALRSHIIFGGVGQQPQIDALKAGLDVLVATPGRLLDLHQQGHVDLSCVEILVLDEADRMLDMGFIHDIKRLLRLVPKKRQNLLFSATFSNEIQTLAQQLLDNPAMIEVAPRNATADKIEQAIYRVDREKKRELLAHLIQQNGWFQVLVFTRTKHGANRLAEQLSKQDIPSMAIHGNKSQGARTRALTAFKSGDLQVLVATDIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGEAVSLVCVDEDALLGNIE-RLIKQKLTKHIEPGFEPDPSIKPEPIENGRRNQRQPRAKRKPEGQSANTGGER 412
BLAST of atp-dependent rna helicase vs. nr
Match: gi|519002079|ref|WP_020157954.1| (MULTISPECIES: RNA helicase [Methylobacter]) HSP 1 Score: 466.463 bits (1199), Expect = 4.686e-160 Identity = 237/358 (66.20%), Postives = 279/358 (77.93%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 MSF +LGL LLRA+ +GYT PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS K A P R L++TPTRELAAQVGES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL Q + L ++E LVLDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS +IR L GLL+NPV IEVAPRNT AE ++Q VY K K LL LI+E +W QVLVFT+TKH ANRLTE+L K + AIHGNKSQ ART AL GFK+GE+R+LVATDVAARGIDI LP+VVN+ELP+ DYVHRIGRTGRAG+ G AVSL + +A Sbjct: 1 MSFSTLGLSDPLLRAIAEAGYTRPSPIQSQAIPAVLKGHDLLAAAQTGTGKTAGFTLPILHRLSE--KSYGANRPIRVLILTPTRELAAQVGESVAKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVNQNAVKLDKVETLVLDEADRMLDMGFIRDIRKIIALLPKKRQNLLFSATFSDDIRKLTTGLLVNPVKIEVAPRNTAAELVEQIVYTVNKPQKAELLCRLIKENDWRQVLVFTSTKHGANRLTEKLNKTDIKAAAIHGNKSQGARTSALAGFKAGELRVLVATDVAARGIDIALLPHVVNFELPRAPADYVHRIGRTGRAGEEGQAVSLVSHDEYSA 356
BLAST of atp-dependent rna helicase vs. nr
Match: gi|759736345|ref|WP_043447071.1| (ATP-dependent RNA helicase RhlE [Halotalea alkalilenta]) HSP 1 Score: 467.233 bits (1201), Expect = 4.925e-160 Identity = 252/418 (60.29%), Postives = 301/418 (72.01%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PDGN-------RVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRPQR-PRRP-GQGGQGGGQRGPGG 407 MSF SLGL P L RAV+ +GYT PSPIQA+AIPA L G D+LAAAQTGTGKTAGF+LP+LQ LS +N RAL++ PTRELAAQV S+++YG L+P +++VFGGVKINPQI RL+ GVD+LVA PGRLLDL Q + L ++E LVLDEADRMLDMGF+ DIK++L L+P KRQ LLFSATFSKEIRTL + +L +PV+IEVAPRN AE + Q VY K K LL LI++ EW QVLVFT TKH ANR+T+RL K G ++ AIHGNKSQNART AL GFKSG + +LVATDVAARGIDI+QLP V+N+ELP V DYVHRIGRTGRAG +G AVSL PD R+ +KP + A G P+ ER P+R PR+P GQG +G Q G Sbjct: 1 MSFSSLGLTPELQRAVDDAGYTEPSPIQAKAIPACLEGRDVLAAAQTGTGKTAGFTLPILQRLSARAYTRNRPV-RALILAPTRELAAQVHASVEQYGQYLNPRLKSEVVFGGVKINPQIERLRDGVDILVACPGRLLDLVGQRAVRLDQVETLVLDEADRMLDMGFLRDIKRVLALLPAKRQNLLFSATFSKEIRTLTQSILKDPVTIEVAPRNAAAESVSQAVYKVPKPAKSALLIHLIKQHEWKQVLVFTATKHMANRVTQRLEKAGISAAAIHGNKSQNARTNALAGFKSGTVEVLVATDVAARGIDISQLPNVINFELPNVPADYVHRIGRTGRAGASGQAVSLVSPDEQDQLRQIERLISKP------IEVIAPEGFDPST--VVVEREPERPPRQPRGQGRRGAPQSARSG 409
BLAST of atp-dependent rna helicase vs. nr
Match: gi|652905290|ref|WP_027159297.1| (ATP-dependent RNA helicase RhlE [Methylobacter luteus]) HSP 1 Score: 466.463 bits (1199), Expect = 5.654e-160 Identity = 232/357 (64.99%), Postives = 277/357 (77.59%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 M F +LGL LLRA+ +GYT PSPIQ+QAIPAVL G D+LAAAQTGTGKTAGF+LP+L LS N R L++TPTRELAAQVGES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL Q + L ++E LVLDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS +IR L GLL+NPV IEVAPRNT AE ++Q VY K K LL L++E +W QVLVFT+TKH ANRLTE+L K+ + AIHGNKSQ ART AL GFK+GE+R+LVATDVAARGIDI QLP+V+N+ELP+ DYVHRIGRTGRAG+ G A+SL + +A Sbjct: 1 MPFSTLGLSDPLLRAIADAGYTKPSPIQSQAIPAVLEGRDLLAAAQTGTGKTAGFTLPILHRLSQKSYSTNRPI-RVLILTPTRELAAQVGESVTKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVSQNAVKLDKVETLVLDEADRMLDMGFIRDIRKVIALLPKKRQNLLFSATFSDDIRKLTTGLLVNPVKIEVAPRNTAAELVEQIVYTVNKTQKAELLCHLVKENDWRQVLVFTSTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALAGFKAGELRVLVATDVAARGIDIAQLPHVINFELPRSPADYVHRIGRTGRAGEEGQAISLVSHDEYSA 356 The following BLAST results are available for this feature:
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of atp-dependent rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of atp-dependent rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1_size3401120:989238..990893- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold1_size3401120-processed-gene-10.1 ID=snap_masked-scaffold1_size3401120-processed-gene-10.1|Name=atp-dependent rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=1656bp|location=Sequence derived from alignment at scaffold1_size3401120:989238..990893- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'atp-dependent rna helicase' has the following synonyms
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