atp-dependent rna helicase, snap_masked-scaffold1_size3401120-processed-gene-10.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000007141 (supercontig:LSalAtl2s:LSalAtl2s402:374905:376772:1 gene:EMLSAG00000007141 transcript:EMLSAT00000007141 description:"maker-LSalAtl2s402-augustus-gene-4.12") HSP 1 Score: 230.335 bits (586), Expect = 6.899e-72 Identity = 128/362 (35.36%), Postives = 201/362 (55.52%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHD-KIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD 362 +FDS+GL LLR + + G+ PS IQ ++I +L G D++A AQ+GTGKTA FS+ +LQ + T+ + + LV++PTRELA Q+ + L G ++ GG + I +L G V+ TPGR+ D+ ++ + I++LVLDEAD ML+ GF I + + +P Q L SAT EI + + +P+ I V T E Q E+ + K L L + Q ++F TK + LTE++ + F ++HG+ Q R ++ F+SG+ R+L+ TDV ARGID+ Q+ V+NY+LP E Y+HRIGR+GR G+ G+A++ + + D++ Sbjct: 29 TFDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQSIDTTMRE-----TQCLVLSPTRELAVQIQKVLLALGDYMNVQ--CHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQIALISATLPHEILEMTSKFMADPIRILVKRDELTLEGXKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIE 383
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000002458 (supercontig:LSalAtl2s:LSalAtl2s1472:18624:24320:1 gene:EMLSAG00000002458 transcript:EMLSAT00000002458 description:"maker-LSalAtl2s1472-snap-gene-0.14") HSP 1 Score: 237.269 bits (604), Expect = 2.000e-69 Identity = 128/355 (36.06%), Postives = 206/355 (58.03%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKR---KNATTPRALVVTPTRELAAQVGESLQKYGSELS----PAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 SF + +++A++ G P+ IQ Q IPAVL+G D++ A TG+GK+ F LP++ KR P L+V P+RELA Q+ ES+ Y S L P + + GG + + +K+GV ++VATPGRL+DL + +++L L LDEADRM+DMGF D++ + +RQTLLFSAT K+I+ A+ L+ P+++ V + I Q+V + + K+ + ++++ VL+F K + + E L G +++++HG K Q+ R+KA+ F++ +LVATDVA++G+D + +V+NY++P E+YVHRIGRTGR G A ++ Sbjct: 974 SFQDMKFPLPIIKALKEKGIERPTSIQMQGIPAVLSGRDLIGIAYTGSGKSLVFILPIVMFCLEQEKRLPFVQNEGPYGLIVVPSRELAKQIHESIYSYFSYLKKNSFPEIRSCLAIGGTSSSETMDVVKKGVHIVVATPGRLMDLLNKKMLNLEICRYLCLDEADRMIDMGFEEDVRTIFSYFKGQRQTLLFSATMPKKIQNFAQSALVKPITVNVGRAGAASMNIIQEVEYVKSEAKVVHIIEMLKKTP-PPVLIFAERKQDVDAIHEYLLLKGVSAVSVHGGKDQDDRSKAVTDFRNLRKDVLVATDVASKGLDFPCIQHVINYDMPDDIENYVHRIGRTGRGNFKGYATTM 1327
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000011452 (supercontig:LSalAtl2s:LSalAtl2s790:154718:161369:1 gene:EMLSAG00000011452 transcript:EMLSAT00000011452 description:"maker-LSalAtl2s790-augustus-gene-1.30") HSP 1 Score: 232.261 bits (591), Expect = 3.032e-69 Identity = 131/350 (37.43%), Postives = 192/350 (54.86%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEK--HDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 SF G D LL+++ S +T P+PIQ+ IP L+G D + A+TG+GKTA F P++ + N P AL++ PTRELA Q+ +K+G +GG Q + G ++ +ATPGR++D+ + V +L + LVLDEADRM DMGF ++ + + RQTLLFSATF K++ LA +L +P+ + +E + Q V EK + +L L+E VL+F T K L + L F IHG+ +Q+ R + + FK + ILVATDVAARG+DI + V+NY++ + + + HRIGRTGRAG G A +L Sbjct: 277 SFGHFGFDEVLLKSIRKSEFTQPTPIQSIGIPVCLSGRDAIGIAKTGSGKTATFLWPIIIHIQHQRPLLNGEGPIALILVPTRELALQIYTEAKKFGKVYD--LNAVCAYGGGSKWEQSKCFESGAEIAIATPGRMIDMIKMKVTNLQRVTYLVLDEADRMFDMGFEAQVRSICDHVRPDRQTLLFSATFKKKVEKLARDVLTDPIKVVQGSIGEASEDVTQIVKVLEKGGYKWEWVLQNLVEFTSAGSVLIFVTKKLNCEELAQNLKLKEFECELIHGDLNQHVRNEIIYKFKKKQFPILVATDVAARGLDIPHIRTVLNYDIARDIDTHTHRIGRTGRAGIKGTAYTL 624
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000000249 (supercontig:LSalAtl2s:LSalAtl2s1036:82728:88820:1 gene:EMLSAG00000000249 transcript:EMLSAT00000000249 description:"maker-LSalAtl2s1036-augustus-gene-0.32") HSP 1 Score: 218.779 bits (556), Expect = 4.960e-67 Identity = 115/349 (32.95%), Postives = 194/349 (55.59%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVF--GGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 F+ L L + G+ PSPIQ +IP L+G DILA A+ GTGKT +S+P+L+ + S + +++ PTRELA Q + ELS + +++ GG + I R+ V ++VATPGR+LDL ++GV + +++ LDEAD++L F + +L++ +P++RQ LL SATF + + + +P + + T + I Q F ++ K+ L L + + NQ ++F + L +++ ++G++ IH +Q R + F++G R LV +D+ RGIDI + V+N++ PK++E Y+HRIGR+GR G G+A++L Sbjct: 53 FEDFCLKRETLMGIFEKGWEKPSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPILEQIDPSND-----VIQGMIIVPTRELALQTSQ----ICIELSKHRNVKVMVTTGGTNLKEDIMRIYEKVHLVVATPGRILDLIEKGVAKVMNCKVICLDEADKLLGHDFKGMLDRLIEHLPERRQILLXSATFPLTVEYFMKRHMKSPYEVNLMD-ELTLKGITQYYAFVQERQKVHCLNTLFTKLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHAKMAQTHRNRVFHDFRAGLCRNLVCSDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINL 391
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000006912 (supercontig:LSalAtl2s:LSalAtl2s391:287461:291724:1 gene:EMLSAG00000006912 transcript:EMLSAT00000006912 description:"maker-LSalAtl2s391-augustus-gene-3.7") HSP 1 Score: 204.527 bits (519), Expect = 8.360e-62 Identity = 131/359 (36.49%), Postives = 198/359 (55.15%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHD-KIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVS-LPDGNRVAAK 358 SFD + L LLR + S G+ PS IQ +AI + D +A AQ+GTGKTA FS+ +LQ + S R +AL++ PTRELA Q+ + + G L T GG I+ I L+ G ++V TPGR+ D+ + + I++ VLDEAD ML GF I + + + + Q +L SAT ++ + + + +P+ I V T E I Q F EK + K+ L L E Q ++F T+ LTE++ F ++HG SQ R + F+SG R+L+ TD+ ARGID+ Q+ V+NY+LP E+Y+HRIGR GR G+ G+A++ + +G+R+A + Sbjct: 41 SFDDMNLKEDLLRGIYSFGFEKPSAIQQRAIVPCIKTRDAIAQAQSGTGKTATFSIAILQKIDISMNR-----TQALILAPTRELAQQIQKVVLSLGDFLKA--TCYACIGGRSISSDIRALEHGPHIVVGTPGRVFDMITREHLRTENIKMFVLDEADEMLSRGFKEQIYDVFRHLNQDIQVVLMSATMPDDVLDVTKRFMRDPIRILVRKEELTLEGILQFYVFVEKEEWKLSTLCDLYETLTITQAVIFCNTRRKVCWLTEKMGLKHFTVSSMHGEMSQEEREVIMREFRSGSSRVLITTDLLARGIDVQQISLVINYDLPVNKENYIHRIGRGGRFGRKGVAINFITEGDRMALQ 392
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000012967 (supercontig:LSalAtl2s:LSalAtl2s98:1266421:1269115:1 gene:EMLSAG00000012967 transcript:EMLSAT00000012967 description:"maker-LSalAtl2s98-augustus-gene-12.20") HSP 1 Score: 208.764 bits (530), Expect = 1.447e-60 Identity = 128/375 (34.13%), Postives = 200/375 (53.33%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQ--TTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDK------IRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD---GNSV 366 F S+GL + R ++ GY P+PIQ + IP +L G D++ A+TG+GKT F +PLL+ L + + K PRA++++PTREL+ Q ++ EL+ + GG + Q A + DVL+ATPGR + L + + L I+ +V DEADR+ ++GF +K++L + RQTLLFSAT K + A+ L +P + + E + + F D+ + +L LI + E Q +VF T+H + L ++ I+ +AR F S + +L+ TD+AARGIDI L V+NY P S+ ++HR+GR RAG++GLA+S G+ +A D+ GNS Sbjct: 33 FQSMGLSREVFRGIQKKGYKVPTPIQRKTIPLILEGRDVVGMARTGSGKTGAFLIPLLEKLCSGNRGK----PRAMILSPTRELSLQT----LRFFKELAKFSGLKAMSILGGESMEKQFAGMHNNPDVLIATPGRFVHLCVEMNLRLDAIQYVVFDEADRLFELGFGEQLKEILGRLSDDRQTLLFSATLPKLLVEFAKAGLNDPTLVRLDVDTKIPETLS--LAFISCRDEGKPALLVHILQKLIAKEE--QTIVFLATRHHVEYIHLLLDSAEISNTYIYSQLDPSARKINTAKFTSNQCSVLLVTDLAARGIDIPLLDNVINYHFPAKSKLFIHRVGRVARAGRSGLAISFVAGDELAYMIDLQLFFGNSF 395
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000012588 (supercontig:LSalAtl2s:LSalAtl2s93:784098:785897:1 gene:EMLSAG00000012588 transcript:EMLSAT00000012588 description:"maker-LSalAtl2s93-augustus-gene-7.24") HSP 1 Score: 201.83 bits (512), Expect = 2.016e-60 Identity = 136/371 (36.66%), Postives = 203/371 (54.72%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAG--NDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVD-VLVATPGRLLDLQQQ-GVISLAEIEILVLDEADRMLDM-GFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAE----KHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELP------KVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 SF+SL L PALL+ V G+ +PS IQ A+PA+LA +++A +Q+GTGKTA F L +L + S P+ L ++PT ELA Q GE K S+ SP T + G +I R + D +++ TPG+ +D + + ++++ VLDEAD M+ M G ++ K + Q LLFSAT+ +++ AE ++ NPV I + T + I Q E K I + G+I G Q ++F T+ A+ L E+L K G + + G S + R + L+ F+ G +IL+ T+V ARGID+ Q+ VVN++LP E Y+HRIGRTGR GK GLA++L DG + A Sbjct: 61 SFESLNLKPALLKGVYGMGFNNPSKIQEMALPALLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDXS-----LNYPQVLCLSPTYELALQTGEVATKM-SQFSPELTVRYAVRG----EEIPRGSKITDHIIIGTPGKTMDWAIKFKFFDIKKVKVFVLDEADVMIAMQGHQDQSIRIQKSLSPDCQMLLFSATYDEDVMNFAENIISNPVLIRLRREEETLDNIKQYWVSCETLEAKXXAISNIYGVITIG---QAMIFCQTRKGASWLAEKLVKEGHSVGMLSGELSIDERIRMLDRFRDGMEKILITTNVMARGIDVEQVSIVVNFDLPVDVAGKADCETYLHRIGRTGRFGKKGLAINLVDGPKSMA 418
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000011335 (supercontig:LSalAtl2s:LSalAtl2s781:205091:212596:-1 gene:EMLSAG00000011335 transcript:EMLSAT00000011335 description:"maker-LSalAtl2s781-augustus-gene-2.34") HSP 1 Score: 200.29 bits (508), Expect = 1.199e-56 Identity = 128/360 (35.56%), Postives = 199/360 (55.28%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVIS--LAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLIN----PVSI---EVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEE--GEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 + D LGL P LLR E+ G +P+P+Q + +L G + + A+TG+GKTA F+LP+L LS ++ ALV+TPTRELA Q+G++ + G L+ I+ GG + Q + L +L+ATPGRL D Q S L +I LV+DEADR+L+ GF + ++ +P +RQTLLF+AT ++ ++ L E +N P E + T ++Q + L G E G +Q +++ + F+++++H K Q R ++L F+S +IL+ATDVA+RG+DI Q+ YV+N+ +P ++DYVHR+GRT RAG+ G +SL Sbjct: 74 LPMDILGLKPWLLRQCETIGLKAPTPVQQATVSKILKGANGVGIAKTGSGKTAAFALPILDALS-----EDPYGVFALVLTPTRELAYQIGDTFKILGKPLNVK--VSIIVGGRDMVMQGSELSTSPHILIATPGRLADHLQSITSSKLLKKIRFLVIDEADRLLEGGFDEQLSQIFTAIPSERQTLLFTATHTEALKDLIE---VNSDKQPFFYREGEDDASSLTVNTLEQYYVLTPADFRDAYLVGXDHEMPGGVSQCILYN---------------ICFSNVSLHSMKPQRERLQSLSRFRSHLAKILIATDVASRGLDIQQVEYVINHNIPTDAKDYVHRVGRTARAGRXGXXISL 408
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000009885 (supercontig:LSalAtl2s:LSalAtl2s643:195185:200626:1 gene:EMLSAG00000009885 transcript:EMLSAT00000009885 description:"maker-LSalAtl2s643-augustus-gene-2.22") HSP 1 Score: 187.578 bits (475), Expect = 5.167e-55 Identity = 99/231 (42.86%), Postives = 143/231 (61.90%), Query Frame = 0 Query: 127 VDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLK----LMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGN 353 VD+L+ATPGRLLDL +G +SL ++ VLDEADRMLDMGF+ ++K+++ RQTL+FSATF E+++ A L + V + V + Q Y EK K + L ++++ + LVF TK + L L + + +IHG++ Q+ R +AL F+SG+ +LV+T VAARG+DI + +VVNY+LPK ++YVHR+GRTGR G G A S DGN Sbjct: 166 VDILIATPGRLLDLVSKGAVSLDAVQFFVLDEADRMLDMGFLPEVKRIVSEGNMCCKTSRQTLMFSATFPYEVQSCAAEFLNDYVFVTVGIVGGVNTDVKQDFYQVEKFKKRQKLKDILDDVGTLKTLVFVETKKNTDFLASWLSENNVPTTSIHGDRLQSQREQALADFRSGKYPVLVSTAVAARGLDIKGVEHVVNYDLPKTVDEYVHRVGRTGRVGNKGKATSFYDGN 396
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000007706 (supercontig:LSalAtl2s:LSalAtl2s449:21910:24507:-1 gene:EMLSAG00000007706 transcript:EMLSAT00000007706 description:"maker-LSalAtl2s449-snap-gene-0.33") HSP 1 Score: 191.045 bits (484), Expect = 4.647e-54 Identity = 126/358 (35.20%), Postives = 193/358 (53.91%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPR---ALVVTPTRELAAQVGESLQKYGS--ELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINP--VSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKM--GFNSMAIHGNKSQNARTKALEGFKSGE-IRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 F + L L+ ++ + Y P+ IQ ++I G+D+L AA+TG GKT F +P+L++L R+ T ALV+TPTRELA Q+ E+L+K G E S +V GG + + RL ++++ TPGRLL + + ++ILVLDEADR LD+GF + +L +PK+RQTLLFSAT ++ I+ L L NP VSI + +T E++ Q E K+ +L I+ ++ LVF + A E L K+ G + + ++G Q R E F E +L ATD+AARG+D ++ +V + P+ + Y+HR+GRT R G ++ L Sbjct: 104 FRDMPLSAYTLKGLKENNYDEPTQIQKESIGLCFRGSDVLGAAKTGCGKTLAFVIPILELLH----REKWTKLDGLGALVITPTRELAYQIFETLRKVGKHHEFSAG----LVIGGKDLQYETKRLS-TCNIVICTPGRLLQHMDENPQFDPITLQILVLDEADRCLDLGFAETMNAILGNLPKERQTLLFSATQTRSIKDLGRLSLKNPVYVSIHEHSKFSTPEKLTQNYMVCELDKKMDMLLSFIKSHRKSKTLVFVQSCKQARYFQELLKKIRVGVSVLGLYGTLHQLRRMSIYEEFCQEENSMVLFATDIAARGLDFPKVDWVFQLDCPEDGKTYLHRVGRTARHASIGKSLML 452
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|143455968|sp|Q5JKF2.2|RH40_ORYSJ (RecName: Full=DEAD-box ATP-dependent RNA helicase 40) HSP 1 Score: 288.5 bits (737), Expect = 9.901e-89 Identity = 156/352 (44.32%), Postives = 225/352 (63.92%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLP-LLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRN--TTAERIDQKVYFAEKHDKIRLLGGLI-EEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 SF++ G P +L+ ++ +G++SP+PIQAQ+ P L D++A A+TG+GKT G+ LP + I ++ P LV+ PTRELA Q+ E K+G S ++ ++GG PQ+ L RGVDV+VATPGRL D+ + ISL ++ LVLDEADRMLDMGF I+K++K +P +RQTL+++AT+ KE+R +AE LL++PV + + + I Q V +K+R L ++ + ++VL+F TTK ++L L + F + AIHG+KSQ+ R K L F+SG ILVATDVAARG+DI + V+NY+ P EDYVHRIGRTGRAG G+A + Sbjct: 151 SFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSG--PTVLVLAPTRELATQILEEAVKFGR--SSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTF 497
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|134034091|sp|A1CXK7.1|DED1_NEOFI (RecName: Full=ATP-dependent RNA helicase ded1) HSP 1 Score: 285.804 bits (730), Expect = 1.032e-88 Identity = 165/383 (43.08%), Postives = 240/383 (62.66%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL-QILST---------SGK----RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLK--LMPK--KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIE-EGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPD-GNRVAAKPDVD 362 +F + LD L+ ++ + Y +P+P+Q +IP V+ G D++A AQTG+GKT GF P+L Q T SG+ R+ P +L++ PTREL +Q+ + +K Y S + P +V+GG I Q+ +++RG D+LVATPGRL+DL ++G ISL I+ LVLDEADRMLDMGF I+++++ MP +RQTL+FSATF ++I+ LA L + V + V +T+E I QKV + E HDK +L ++ G L+F TK A+ L++ L F + AIHG+++Q R +ALE F+SG ILVAT VAARG+DI + +V+NY+LP +DYVHRIGRTGRAG G+A + + GNR + +D Sbjct: 191 AFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSAVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPC----VVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELID 569
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|108861885|sp|Q8H136.2|RH14_ARATH (RecName: Full=DEAD-box ATP-dependent RNA helicase 14) HSP 1 Score: 283.878 bits (725), Expect = 1.161e-88 Identity = 155/352 (44.03%), Postives = 221/352 (62.78%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRN--TTAERIDQKVYFAEKHDKIRLLGGLIEEGE-WNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 MSF++ G P LLR V S+G+++P+PIQAQ+ P + G DI+A A+TG+GKT G+ +P L + + P LV++PTRELA Q+ E K+G S + ++GG PQ+ L+RG D++VATPGRL D+ + ISL +I LVLDEADRMLDMGF I+K++K +P KRQTL+++AT+ K +R +A LL+NP + + + + I Q + +K R L ++ E ++V++F +TK ++LT L + F + AIHG+KSQ R L F+SG +LVATDVAARG+D+ + VVNY+ P EDYVHRIGRTGRAG G A + Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRI-RNDSRMGPTILVLSPTRELATQIQEEAVKFGR--SSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTF 505
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|1706311|sp|P24784.2|DBP1_YEAST (RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD box protein 1; AltName: Full=Helicase CA1) HSP 1 Score: 283.878 bits (725), Expect = 1.218e-88 Identity = 163/371 (43.94%), Postives = 223/371 (60.11%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSG------------KRKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGN 353 + F S LD L+ ++ + +T P+P+Q +IP V G D++A AQTG+GKT GF PL L SG RK P ALV+ PTRELA Q+ E +K Y S + P +V+GG I Q+ + RG D+LVATPGRL DL ++G +SLA I+ LVLDEADRMLDMGF I+ +++ MP + RQTL+FSATF +I+ LA L N + + V +T+E I Q++ + + DK L L+ L+F TK A++LT+ L F + AIHG+++Q R +AL FK+ ILVAT VAARG+DI + +V+NY+LP +DYVHRIGRTGRAG G+A S + N Sbjct: 154 LDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGY--PSALVLAPTRELATQIFEEARKFTYRSWVRPC----VVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSN 518
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|108861890|sp|Q84W89.2|RH37_ARATH (RecName: Full=DEAD-box ATP-dependent RNA helicase 37) HSP 1 Score: 284.263 bits (726), Expect = 1.383e-88 Identity = 166/378 (43.92%), Postives = 229/378 (60.58%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPR--------ALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLM--PKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIE-------EGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVS-LPDGNRVAAKP 359 +F + L AL + Y P+P+Q AIP +L G D++A AQTG+GKTA F P I+S K ++ PR A++++PTRELA+Q+ + +K+ + + +GG IN Q+ L+RGVD+LVATPGRL DL ++ +S+ I L LDEADRMLDMGF I+K+++ M P + RQTLLFSATF +EI+ LA L N + + V ++ + I Q+V F DK L L+ +G+ LVF TK A+ L LC GF + +IHG+++Q R AL+ FKSG ILVATDVAARG+DI + +VVN++LP +DYVHRIGRTGRAGK+GLA + DGN A+P Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFP---IISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQT--GVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARP 532
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1198235011|ref|WP_086900249.1| (ATP-dependent RNA helicase RhlE [Kushneria marisflavi] >gi|1197437593|gb|ART63038.1| ATP-dependent RNA helicase RhlE [Kushneria marisflavi]) HSP 1 Score: 476.863 bits (1226), Expect = 1.410e-163 Identity = 237/355 (66.76%), Postives = 282/355 (79.44%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTS--GKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351 MSF LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS G ++ RAL++TPTRELAAQ+GES++KYG L P + +V+GGVK+NPQIARL+ GVDVLVA PGRLLDL Q + L ++E LVLDEADRMLDMGFIHDIKK+L+L+PKKRQ LLFSATFSKEIR LA LL NPVSI+VAPRNT AE +DQ +Y EK ++ LL LI +W+Q LVFT TKH ANR+T+ L K G + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK DYVHRIGRTGRAG +G AVSL PD Sbjct: 1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSREPQGHKRPV---RALILTPTRELAAQIGESVEKYGVHLKPRLKSDVVYGGVKVNPQIARLRDGVDVLVACPGRLLDLVNQKAVRLDQVETLVLDEADRMLDMGFIHDIKKILRLVPKKRQNLLFSATFSKEIRELAGTLLDNPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1343579608|gb|PPD49857.1| (ATP-dependent RNA helicase RhlE [Methylobacter sp.]) HSP 1 Score: 474.937 bits (1221), Expect = 1.708e-163 Identity = 239/362 (66.02%), Postives = 281/362 (77.62%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD 362 M F +LGL LLRA+ +GYT+PSPIQAQAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS KN R L++TPTRELAAQVGES+ KYG+ L P T+IVFGGVKINPQ+ RL+ GVD+LVATPGRLLDL Q + L ++E L+LDEADRMLDMGFI DI+K++ L PKKRQ LLFSATFS++IR L GLL+NP+ IEVAPRNT AE ++Q Y K K LL LI+ +W QVLVFTTTKH ANRLTE+L +G + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDI LP+VVN+ELPKV EDYVHRIGRTGRAG+ G A+SL + V A V+ Sbjct: 1 MPFTTLGLSDPLLRAIADAGYTTPSPIQAQAIPAVLNGHDVLAAAQTGTGKTAGFTLPILHRLSQKSYDKNRPV-RCLILTPTRELAAQVGESVGKYGAHLHPRLKTEIVFGGVKINPQMMRLRGGVDILVATPGRLLDLLSQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIALCPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQIAYLTNKASKTGLLCHLIKTNDWQQVLVFTTTKHGANRLTEKLNNVGIKAAAIHGNKSQGARTSALAGFKAGEIRVLVATDVAARGIDIALLPHVVNFELPKVPEDYVHRIGRTGRAGEEGQAISLISHDEVNALRQVE 361
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1348907824|ref|WP_104423713.1| (ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum] >gi|1346752325|gb|PPK71841.1| ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum]) HSP 1 Score: 474.937 bits (1221), Expect = 1.946e-163 Identity = 231/349 (66.19%), Postives = 278/349 (79.66%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 M F +LGL LLRA+ +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS N R L++TPTRELAAQ+GES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL Q + L ++E L+LDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS++IR L GLL+NP+ IEVAPRNT AE ++Q Y K +K LL LI+E +W QVLVFTTTKH ANRLTE+L K+ + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+ EDYVHRIGRTGRAG+ G A+SL Sbjct: 1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYTNNRPV-RVLILTPTRELAAQIGESVSKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIALLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWRQVLVFTTTKHGANRLTEKLNKINIKAAAIHGNKSQGARTSALAGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1093981390|ref|WP_070979946.1| (ATP-dependent RNA helicase RhlE [Kushneria sp. YCWA18] >gi|1092294756|gb|OHV08775.1| ATP-dependent RNA helicase RhlE [Kushneria sp. YCWA18]) HSP 1 Score: 476.093 bits (1224), Expect = 2.264e-163 Identity = 257/428 (60.05%), Postives = 304/428 (71.03%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILS---TSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PDG-------NRVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRP-----QRPRRPGQGGQGGGQRGPGGQGRN 411 MSF LGL P LLRAVE++GY +PSPIQA+AIPA L G D+LAAAQTGTGKTAGF+LP+LQ LS +G+R RAL++TPTRELAAQV ES++KYG+ LSP + +V+GGVKINPQI RL+ GVD+LVA PGRLLDL Q + L ++E LVLDEADRMLDMGFIHDI+K+LKL+P++RQTLLFSATFS EIR LA+ LL PVSI+VAPRNT AE +DQ VY +K K LL LI + + Q LVFT TKH ANR+T+ L K G + AIHGNKSQNART AL GFKSGE+RILVATDVAARGIDI LP+V+N+ELP V DYVHRIGRTGRAG +G A+SL PD R+ KP S N+ A G P +R RP G + RG GG+ RN Sbjct: 1 MSFSELGLAPELLRAVEAAGYHTPSPIQAKAIPACLEGRDVLAAAQTGTGKTAGFTLPILQRLSRQPVTGRR----AVRALILTPTRELAAQVHESVEKYGAALSPRLESDVVYGGVKINPQINRLREGVDILVACPGRLLDLVSQKAVRLDQVETLVLDEADRMLDMGFIHDIRKILKLVPQQRQTLLFSATFSSEIRQLADKLLDQPVSIDVAPRNTAAETVDQSVYKIDKPSKTALLVHLIRQQQLEQALVFTATKHMANRVTKNLQKAGITAAAIHGNKSQNARTSALNGFKSGEVRILVATDVAARGIDIAHLPHVINFELPNVPADYVHRIGRTGRAGASGSAMSLVAPDERDQLKGIERLIGKPVPVHESKNFDARAVQEELSSAGGQTEDPGPPGQRRNARPAGGQRQQRSRGQGGRERN 424
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1197586166|ref|WP_086621375.1| (ATP-dependent RNA helicase RhlE [Kushneria konosiri] >gi|1196021791|gb|ARS52618.1| ATP-dependent RNA helicase RhlE [Kushneria konosiri]) HSP 1 Score: 475.322 bits (1222), Expect = 5.707e-163 Identity = 237/354 (66.95%), Postives = 282/354 (79.66%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351 MSF LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS K + P RAL++TPTRELAAQ+GES++KYG L P + +V+GGVK+NPQIARL+ GVDVLVA PGRLLDL Q + L ++E LVLDEADRMLDMGFIHDIKK+L+L+PK+RQ LLFSATFSKEIR LA LL NPVSI+VAPRNT AE +DQ +Y EK ++ LL LI +W+Q LVFT TKH ANR+T+ L K G + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK DYVHRIGRTGRAG +G AVSL PD Sbjct: 1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSR--KPQGHKRPVRALILTPTRELAAQIGESVEKYGVHLKPRLKSDVVYGGVKVNPQIARLRDGVDVLVACPGRLLDLVNQKAVRLDQVETLVLDEADRMLDMGFIHDIKKILRLVPKQRQNLLFSATFSKEIRELAGTLLNNPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1222075770|ref|WP_090132494.1| (ATP-dependent RNA helicase RhlE [Kushneria avicenniae] >gi|1097387640|emb|SFC47209.1| ATP-dependent RNA helicase RhlE [Kushneria avicenniae]) HSP 1 Score: 473.781 bits (1218), Expect = 2.043e-162 Identity = 238/356 (66.85%), Postives = 282/356 (79.21%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILST---SGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351 MSF LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS SGKR RAL++TPTRELAAQ+GES++KYG LSP + +V+GGVK+NPQI RL+ GVD+LVA PGRLLDL Q + L E+E LVLDEADRMLDMGFIHDIKK+L+L+P KRQ LLFSATFSKEIR LA LL +PVSI+VAPRNT AE +DQ +Y EK ++ LL LI +W+Q LVFT TKH ANR+T+ L K G + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK DYVHRIGRTGRAG +G AVSL PD Sbjct: 1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSRQPRSGKRPV----RALILTPTRELAAQIGESVEKYGVHLSPRLKSDVVYGGVKVNPQITRLRDGVDILVACPGRLLDLVGQKAVRLDEVETLVLDEADRMLDMGFIHDIKKILRLVPGKRQNLLFSATFSKEIRELAGTLLNDPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352
BLAST of atp-dependent rna helicase vs. nr
Match: gi|652888017|ref|WP_027148013.1| (ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum]) HSP 1 Score: 472.241 bits (1214), Expect = 2.346e-162 Identity = 230/349 (65.90%), Postives = 277/349 (79.37%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 M F +LGL LLRA+ +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS N R L++TPTRELAAQ+GES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL Q + L ++E L+LDEADRMLDMGFI DI+K++ +PKKRQ LLFSATFS++IR L GLL+NP+ IEVAPRNT AE ++Q Y K +K LL LI+E +W QVLVFTTTKH ANRLTE+L K+ + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+ EDYVHRIGRTGRAG+ G A+SL Sbjct: 1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYGNNRPV-RVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348
BLAST of atp-dependent rna helicase vs. nr
Match: gi|493946465|ref|WP_006890407.1| (RNA helicase [Methylobacter tundripaludum] >gi|344262165|gb|EGW22436.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] >gi|1346757703|gb|PPK77119.1| ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum]) HSP 1 Score: 472.241 bits (1214), Expect = 2.734e-162 Identity = 230/349 (65.90%), Postives = 277/349 (79.37%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 M F +LGL LLRA+ +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS N R L++TPTRELAAQ+GES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL Q + L ++E L+LDEADRMLDMGFI DI+K++ +PKKRQ LLFSATFS++IR L GLL+NP+ IEVAPRNT AE ++Q Y K +K LL LI+E +W QVLVFTTTKH ANRLTE+L K+ + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+ EDYVHRIGRTGRAG+ G A+SL Sbjct: 1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYGNNRPV-RVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348
BLAST of atp-dependent rna helicase vs. nr
Match: gi|647287549|ref|WP_025732497.1| (hypothetical protein [Carnimonas nigrificans]) HSP 1 Score: 473.396 bits (1217), Expect = 5.568e-162 Identity = 238/349 (68.19%), Postives = 279/349 (79.94%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 MSF SLGL PAL RAV+ +GYT+PSPIQA+AIP L G D+LAAAQTGTGKTAGF+LP+LQ L+ + +R+ +PRAL++TPTRELAAQ+ ESL Y LSP + +VFGGVKINPQI RL+RGVDVLVA PGRLLDL Q +SL IE LVLDEADRMLDMGF+HDIK++LKL+P KRQ LLFSATFS EIRTL E +L NPVSI+VAPRN+ AE ++Q VY +K K LL LI++ QVLVFT TKH ANR+T+RL + G ++ AIHGNKSQNART+AL GFKSG I +LVATDVAARGIDI QLP V+N+ELPK + DYVHRIGRTGRAG G AVSL Sbjct: 1 MSFASLGLLPALKRAVDDAGYTTPSPIQAKAIPVALEGRDVLAAAQTGTGKTAGFALPILQRLALTPERQ-GKSPRALILTPTRELAAQIHESLVAYSEHLSPRLRSDVVFGGVKINPQIERLQRGVDVLVACPGRLLDLVSQKAVSLNHIETLVLDEADRMLDMGFVHDIKRILKLLPAKRQNLLFSATFSAEIRTLTESILHNPVSIDVAPRNSAAETVEQAVYKIDKPLKSALLIHLIKQQSLTQVLVFTATKHMANRVTQRLERAGISAAAIHGNKSQNARTQALAGFKSGTINVLVATDVAARGIDIAQLPNVINFELPKAAPDYVHRIGRTGRAGAEGKAVSL 348
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1191468117|gb|OTE97297.1| (ATP-dependent RNA helicase RhlE [Crenothrix sp. D3]) HSP 1 Score: 469.544 bits (1207), Expect = 3.086e-161 Identity = 235/358 (65.64%), Postives = 278/358 (77.65%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 M F LGL LLRA+ +GYT+PSPIQ QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS K ++ P R L++TPTRELAAQVGES+ KYG L P T++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL Q + L ++E LVLDEADRMLDMGFI DI+K++ +PKKRQ LLFSATFS++IR L GLL+NP+ IEVA RNT AE ++Q Y K +K LL LI+ +W QVLVFT+TKH ANRLT++L K+ + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVNYELP+ DYVHRIGRTGRAG+ G AVSL + VAA Sbjct: 1 MPFTKLGLSDPLLRAIAEAGYTTPSPIQLQAIPAVLNGHDLLAAAQTGTGKTAGFALPILHRLSQ--KHYSSNRPIRVLILTPTRELAAQVGESVSKYGEHLHPRLKTEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVNQNAVKLDQVETLVLDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRQLTTGLLVNPIKIEVAARNTAAETVEQIAYLCNKANKAELLCHLIKTNDWQQVLVFTSTKHGANRLTDKLNKLDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNYELPRAPADYVHRIGRTGRAGEEGQAVSLVSHDEVAA 356 The following BLAST results are available for this feature:
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of atp-dependent rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of atp-dependent rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1_size3401120:989238..990893- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold1_size3401120-processed-gene-10.1 ID=snap_masked-scaffold1_size3401120-processed-gene-10.1|Name=atp-dependent rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=1656bp|location=Sequence derived from alignment at scaffold1_size3401120:989238..990893- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'atp-dependent rna helicase' has the following synonyms
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