atp-dependent rna helicase, snap_masked-scaffold1_size3401120-processed-gene-10.1 (gene) Tigriopus kingsejongensis

Overview


Name	atp-dependent rna helicase
Unique Name	snap_masked-scaffold1_size3401120-processed-gene-10.1
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

[Close]

BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000002659 (supercontig:LSalAtl2s:LSalAtl2s153:555306:559625:1 gene:EMLSAG00000002659 transcript:EMLSAT00000002659 description:"maker-LSalAtl2s153-augustus-gene-5.7")

HSP 1 Score: 185.652 bits (470), Expect = 4.137e-53
Identity = 115/340 (33.82%), Postives = 188/340 (55.29%), Query Frame = 0

Query:   13 LRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPR----ALVVTPTRELAAQ---VGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAE-GLLINPVSIEVAPRN----TTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGR 339
            L  ++  G++  + IQAQ IP +L G D++ AA+TG+GKT  F +P ++++      K    PR     ++++PTREL+ Q   V   L KY        T  +V GG   N +  +L +G++++VATPGRLLD L+         ++ L++DEADR+LD+GF  ++KK+++L+PKKRQT+LFSAT +K+   L +  L   P+ I +   N     T   ++Q         ++ LL   +++    +V+VF ++        E    +     +IHG + Q  RT     F + +  IL+ TDVAARG+DI  + ++V Y+     ++Y+HR+GRT R
Sbjct:  131 LNGIQDMGFSQMTEIQAQTIPHLLEGRDLVGAAKTGSGKTLSFLIPAVELIY-----KLKFMPRNGTGVIIISPTRELSMQTFGVLRELLKYH-----CHTYGLVMGGANRNTEAQKLNKGINIVVATPGRLLDHLRNTKDFLYKNLQCLIIDEADRILDVGFEEEMKKIIQLLPKKRQTMLFSATTTKKTEDLVKLALKKEPIYIGIDSANDNGAATVSGLEQGYVICPSEKRLLLLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVQSIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPDVDWIVQYDPTDDPKEYIHRVGRTAR 460

[Close]

BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000005732 (supercontig:LSalAtl2s:LSalAtl2s309:725565:728317:1 gene:EMLSAG00000005732 transcript:EMLSAT00000005732 description:"maker-LSalAtl2s309-augustus-gene-7.79")

HSP 1 Score: 180.259 bits (456), Expect = 3.372e-51
Identity = 104/356 (29.21%), Postives = 189/356 (53.09%), Query Frame = 0

Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHD--------KIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            +F+       +L  ++ +GY  PSPIQ  A+P  LAG D L  +++GTGKT  +   +L  LS+     N    + L++ PTRE+A Q  +++ + G  LS  + +  + GG+ +     +LK+   +   +PGR+  L ++GV++++++++ +LDEAD++ +  F  D+  +++ +P+  QTL  SATF   +       L NP  + +         ++Q V  +  H         K   L  LI    + Q +VF      A  + ++L   G+ ++ + G + Q  R  +L+  K+   RI++ TD++ARGID   + +V+N+++P     Y+HRIGR GR G  G+A+++
Sbjct:   21 TFEHFQFQSPILEGLKVNGYQVPSPIQVSALPYTLAGLDXLVQSKSGTGKTLVY---VLSALSSIDVESNEL--QGLLIAPTREIAVQGAQTMLEIGGHLSKLKASTFI-GGMSVEEDKLKLKK-CHMAFGSPGRVKQLIEEGVMNVSQLKVFILDEADKLCEKSFKEDLSWIMRTLPEIHQTLALSATFPNSLENTLISKLKNPTHVRLGQDCQVLLGVNQFVLESPSHGLVKKVVDYKFESLLKLISNVSFEQCIVFCNYSLRARAICDKLNDRGWPAIFLAGMQEQKDRLNSLKDLKTFRCRIVLTTDLSARGIDARHVNFVINFDVPSQGTTYLHRIGRAGRYGSKGIALTI 369

[Close]

BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000012740 (supercontig:LSalAtl2s:LSalAtl2s967:89676:95604:1 gene:EMLSAG00000012740 transcript:EMLSAT00000012740 description:"augustus_masked-LSalAtl2s967-processed-gene-0.13")

HSP 1 Score: 171.785 bits (434), Expect = 2.800e-48
Identity = 116/360 (32.22%), Postives = 192/360 (53.33%), Query Frame = 0

Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGV-ISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPK---KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQK-VYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMG-FNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVS-LPDGNRV 355
            +D  G  P  L  + SS Y +P+PIQAQ+IP +L G D+L +A TG+GKTA + LP+L       + KN    + +++ PTREL+ Q+ +   K    + P   T++     K + Q      G +VL++TP  L+ L + G  + L  +E L++DE+D++ +       ++ L ++ K     +   FSAT + ++    +  L N VS+ +  RN   + + Q  VY   +  K   L  LI +G    VL+F      A+ L E L K     +  IH ++S   R  A++ F++G   +L+ T++ +RGID+  +  V+NY+ P  +  Y+HR+GRTGRAG+ G AV+   D ++V
Sbjct:   69 WDLSGSLPEGLIEMVSSLYPNPTPIQAQSIPIMLQGRDVLGSAPTGSGKTAAYLLPIL-----VNQEKNKL--KTIILCPTRELSHQIHQEALKL---IPPNYQTKVQVASSKKSNQ------GANVLISTPNTLVYLIKDGSSLDLKSLEWLIVDESDKLFEDKGKASFREQLAVVYKACMSSKKAFFSATLATDVENWCKTNLDNAVSVTIGIRNKACKDVKQSLVYTGSEKGKNYALTNLINDGIKPPVLIFVQDFERADELKEILTKQKKIKAEVIHSHRSLLQREDAIKTFRAGRTWVLICTELMSRGIDVKGVNLVINYDFPPSTVSYIHRVGRTGRAGRPGRAVTFFTDDDKV 412

[Close]

BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000010227 (supercontig:LSalAtl2s:LSalAtl2s679:403636:405959:-1 gene:EMLSAG00000010227 transcript:EMLSAT00000010227 description:"maker-LSalAtl2s679-augustus-gene-3.17")

HSP 1 Score: 169.859 bits (429), Expect = 3.143e-47
Identity = 124/381 (32.55%), Postives = 196/381 (51.44%), Query Frame = 0

Query:   21 YTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQIL-STSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSP--AQTTQIVFGGVKINPQIARL-KRGVDVLVATPGRLLDLQQQGVISLAEIE------------ILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPR---NTTAERIDQKVYFAEKHDKIR----LLGGLIEEGEWNQVLVFTTT----KHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAG--LAVSLP------DGNRVAAKPDVDGNSV 366
            +   +PIQA AIP  L   D+ A A TG+GKT  F +P+L+IL ++S +        AL+++PTRELA+Q+ + L+ + S++    +       G   +   + +  K G  +++ATPGRL D+      S+ +++            IL+LDEADR+L +GF   I  ++  +PK+R+T LFSAT +K++  L    L NPV ++V      N  +  I    Y+ +     +    LL  L  E    + +VF +T    ++F+  L   L        A+HG K    R K  + FK  ++ +LV TDV +RG+D   + +VV ++ PK +E +VHRIGRT R+G  G  L + LP      D  ++  K D D   V
Sbjct:   33 FKKMTPIQAXAIPLFLGLKDVCAEAVTGSGKTLAFVIPILEILLNSSNEESKVHDIGALILSPTRELASQISQVLEVFLSKIPSLNSLLIIGGGGSSSVGETLRKFEKEGAKIIIATPGRLEDILTGKTESINQLKAEKMARGFKSTKILILDEADRLLRLGFETAINTIISFLPKQRRTSLFSATQTKDLDELIRAGLRNPVLVKVKEHGKENELSTPIKLTNYYMKCDPPAKKFATLLKFLKTEAAGKKTMVFFSTCACVEYFSTLLERFLKDDNTPVFALHGQKG-GTRFKIFDKFKKLDMGVLVCTDVLSRGVDFPDVEWVVQFDAPKTAEAFVHRIGRTARSGAVGNALLLLLPTEDSYIDFIKINQKVDFDKMEV 412

[Close]

BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000000991 (supercontig:LSalAtl2s:LSalAtl2s116:1961290:1963414:1 gene:EMLSAG00000000991 transcript:EMLSAT00000000991 description:"maker-LSalAtl2s116-augustus-gene-19.39")

HSP 1 Score: 161.384 bits (407), Expect = 4.514e-44
Identity = 122/384 (31.77%), Postives = 194/384 (50.52%), Query Frame = 0

Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPK------KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTA---------------ERIDQKVYFAEKHDKIRLLGGLIEEGEWN-------QVLVFTTTKH---FANRLTER--LCKMGFN--SMAIHGNKSQNARTKALEGFK---SGEIR---ILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAG 344
            FD  G+ P +++ ++S G + P+ +Q+  IP +LAG D+L   QTG+GK    +LPLL  L        A TP         ++    G     + + + P     ++ GG K   + ARL++G+++LV+TPGRLLD + +   + L++I  LV DEADRMLD+G+  D+  ++  + +      KRQT+L SAT ++ IR L+E  L +P  +++   +  +               E + Q         ++  L   I    W        ++L+F  T+    + + L E+    + G N   M +HGN  Q  RTK    F+   SG I    +L+ TDVAARG+D+ ++ ++V Y  P  + DYVHRIGRT R G  G
Sbjct:   95 FDGHGIHPYIIKNLDSMGISRPTAVQSATIPRILAGKDVLVKXQTGSGKXLAXALPLLHSL-------QAITP---------QIHRDSG-----FFARIVPG----VLHGGEKRKSEKARLRKGLNILVSTPGRLLDHIHKTKTLDLSKIHYLVFDEADRMLDLGYERDVNDIINAISENSSEEIKRQTILLSATLTQGIRQLSEVSLKHPDYVDITSTDGNSVMAISDDLQVDTAVPENLQQTFIVVPAKLRLITLSSFIL---WKCGGKSMKKILIFLATQDMVDYHHTLFEQSLYSEEGKNIKFMKLHGNMDQGERTKVFNDFREIDSGVISSGLVLLCTDVAARGLDLPKVDWIVQYNPPISTADYVHRIGRTARIGLKG 450

[Close]

BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|548730|sp|P25888.3|RHLE_ECOLI (RecName: Full=ATP-dependent RNA helicase RhlE)

HSP 1 Score: 444.121 bits (1141), Expect = 3.005e-153
Identity = 223/350 (63.71%), Postives = 269/350 (76.86%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            MSFDSLGL P +LRAV   GY  P+PIQ QAIPAVL G D++A+AQTGTGKTAGF+LPLLQ L T         P RAL++TPTRELAAQ+GE+++ Y   L+    + +VFGGV INPQ+ +L+ GVDVLVATPGRLLDL+ Q  + L ++EILVLDEADRMLDMGFIHDI+++L  +P KRQ LLFSATFS +I+ LAE LL NP+ IEVA RNT ++++ Q V+F +K  K  LL  +I +G W QVLVFT TKH AN L E+L K G  S AIHGNKSQ ART+AL  FKSG+IR+LVATD+AARG+DI +LP+VVNYELP V EDYVHRIGRTGRA   G A+SL
Sbjct:    1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNI--RSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSL 348

[Close]

BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|677995702|sp|B9XXL6.1|RHPA_HELP8 (RecName: Full=DEAD-box ATP-dependent RNA helicase RhpA)

HSP 1 Score: 298.901 bits (764), Expect = 6.597e-96
Identity = 154/348 (44.25%), Postives = 222/348 (63.79%), Query Frame = 0

Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            SF+ LGL  ++L++V  +G+TSPSPIQ +AIPAVL G D++A AQTGTGKTA F+LP++  L      KN  T  ALV+TPTRELA Q+ + + K G        T  V+GG  +  Q   +K+   V++ATPGRLLD  +   I     +++VLDE+D MLDMGF+ DI+++   +P + Q LLFSAT  + I+ LA+ +L NP+ I +AP N T   I Q+ Y   +H++   +  L++     + +VFT TK  A+ L + L    + S A+HG+  Q  R  ++  FK  +  +LVATDVA+RG+DI+ + +V NY LP  +E Y+HRIGRTGRAGK G+A++L
Sbjct:   21 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL------KNNHTIEALVITPTRELAMQISDEIFKLGKHTR--TKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL 360

[Close]

BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|81815103|sp|O25029.1|RHPA_HELPY (RecName: Full=DEAD-box ATP-dependent RNA helicase RhpA)

HSP 1 Score: 298.901 bits (764), Expect = 7.671e-96
Identity = 154/348 (44.25%), Postives = 222/348 (63.79%), Query Frame = 0

Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            SF+ LGL  ++L++V  +G+TSPSPIQ +AIPAVL G D++A AQTGTGKTA F+LP++  L      KN  T  ALV+TPTRELA Q+ + + K G        T  V+GG  +  Q   +K+   V++ATPGRLLD  +   I     +++VLDE+D MLDMGF+ DI+++   +P + Q LLFSAT  + I+ LA+ +L NP+ I +AP N T   I Q+ Y   +H++   +  L++     + +VFT TK  A+ L + L    + S A+HG+  Q  R  ++  FK  +  +LVATDVA+RG+DI+ + +V NY LP  +E Y+HRIGRTGRAGK G+A++L
Sbjct:   21 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL------KNNHTIEALVITPTRELAMQISDEIFKLGKHTR--TKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL 360

[Close]

BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363412|sp|Q9HXE5.1|RHLB_PSEAE (RecName: Full=ATP-dependent RNA helicase RhlB >gi|122261039|sp|Q02S21.1|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase RhlB >gi|226739542|sp|B7UUT0.1|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase RhlB)

HSP 1 Score: 294.664 bits (753), Expect = 1.783e-95
Identity = 154/368 (41.85%), Postives = 228/368 (61.96%), Query Frame = 0

Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL-QILSTSG-KRKNATTPRALVVTPTRELAAQVGE---SLQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD 362
            F    L P+L+ A+   G+   +PIQAQ +   L G D +  AQTGTGKTA F + ++ Q+L T   K +    PRAL++ PTREL  Q+ +   +L KY              GG+  + Q+ +L+ R  D+LVATPGRLLD  Q+G + L  +E++VLDEADRMLDMGFI  ++++++  P K  RQTLLFSATF+ ++  LA+   ++P  +E+ P N  ++ ++Q VY     DK +LL  L+ +  W +V+VF   K    R+ ERL K G ++  + G+  Q+ R + LEGF+ G+IR+LVATDVA RGI I+ + +V+N+ LP+  +DYVHRIGRTGRAG +G ++S    +   A P ++
Sbjct:   11 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-----GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIE 373

[Close]

BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363284|sp|Q887N8.1|RHLB_PSESM (RecName: Full=ATP-dependent RNA helicase RhlB)

HSP 1 Score: 286.96 bits (733), Expect = 1.615e-92
Identity = 148/355 (41.69%), Postives = 221/355 (62.25%), Query Frame = 0

Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSG--KRKNATTPRALVVTPTRELAAQVGES---LQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            F    L P L+ A++  G+   +PIQA  +   L G D +  AQTGTGKTA F + +++ L+ +     +    PRAL++ PTREL  Q+ +    L KY +            GG+  + Q+ +L+ R  D+LVATPGRLLD  Q+G + L  +E++VLDEADRMLDMGFI  ++++++  P K  RQTLLFSATF++++  LA+    +P  +E+   N  ++ ++Q +Y     DK +LL  L+ +  W +V+VF   K    R+ ERL + G N+  + G+  Q+ R K LEGF+ G+IR+LVATDVA RGI I+ + +V+N+ LP+V +DYVHRIGRTGRAG  G+++S 
Sbjct:   10 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTN-----LNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISF 359

[Close]

BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|74659403|sp|Q6BU54.1|DED1_DEBHA (RecName: Full=ATP-dependent RNA helicase DED1)

HSP 1 Score: 293.893 bits (751), Expect = 2.503e-92
Identity = 166/368 (45.11%), Postives = 232/368 (63.04%), Query Frame = 0

Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL---------QILSTSGK-RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGN 353
            +F +  LDP L+  V+ S +T P+P+Q  ++P V AG D++A AQTG+GKT GF  P+L         ++  T+G    +   P ALV+ PTREL +Q+ +  +K  Y S + P+    +V+GG  I  QI  L+RG D+LVATPGRL DL ++G +SLA I+ LVLDEADRMLDMGF   I+ +++   MP  + RQTL+FSATF KEI+ LA   L   + + V    +T+E I QK+ + E  +K  +L  L+   +    ++FT TK  A+ L + L   GF + AIHG++SQ  R KAL  FK+G   ILVAT VAARG+DI  + ++VNY+LP   +DYVHRIGRTGRAG  G+A +  + N
Sbjct:  157 AFTAPPLDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAEVPETAGAFSSHKVYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPS----VVYGGADIGGQIRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVEDRQTLMFSATFPKEIQFLARDFLKEYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKTGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRTGRAGNIGIATAFFNRN 520

[Close]

BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363346|sp|Q8PFZ3.1|RHLB_XANAC (RecName: Full=ATP-dependent RNA helicase RhlB)

HSP 1 Score: 291.197 bits (744), Expect = 6.214e-92
Identity = 167/412 (40.53%), Postives = 241/412 (58.50%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQ--ILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPTGNER---RPQRPRRPGQGGQGGGQRG 404
            ++F S  L PAL+  +ES+G+T  +PIQA  +P  L G D+   AQTGTGKT  F + ++   ++  +   +    PRAL++ PTRELA Q+ +   K+G++L       +V+GGV  + Q   L++GVDV++ATPGRL+D ++Q  V+SL   EI VLDEADRM D+GFI DI+ LL+ MP++  RQTLLFSAT S  +  LA   +  P  + V   + TA R+ Q++YF    +K  LL GL+   E  + +VF  TK F  R+   L + G+    + G+  Q  R   L  F+ G++ ILVATDVAARG+ I+ + YV NY+LP  +EDYVHRIGRT R G+ G A+S        + PD++       A +  +   EP  +E     P+ PR P +G +     G
Sbjct:    9 VTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL--GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIE-------AYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAG 411

[Close]

BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363291|sp|Q88NB7.1|RHLB_PSEPK (RecName: Full=ATP-dependent RNA helicase RhlB)

HSP 1 Score: 284.648 bits (727), Expect = 1.412e-91
Identity = 148/355 (41.69%), Postives = 216/355 (60.85%), Query Frame = 0

Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSG--KRKNATTPRALVVTPTRELAAQVGE---SLQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            F    L   L+ A+   G+   +PIQAQ +   L G D +  AQTGTGKTA F + ++  L  +   K +    PRAL++ PTREL  Q+ +   +L KY              GG+  + Q+  L+ R  D+LVATPGRLLD  Q+G + L  +E++VLDEADRMLDMGFI  ++++++  P K  RQTLLFSATF+ ++  LA+    NP  +E+ P N  +E ++Q VY     DK +LL  L+ + +W +V+VF   K    R+ E+L + G N+  + G+  Q+ R + LE F+ G I +LVATDVA RGI I+ + +V+N+ LP+  +DYVHRIGRTGRAG +G+++S 
Sbjct:   11 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-----GLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISF 360

[Close]

BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|223590230|sp|A5DQS0.3|DED1_PICGU (RecName: Full=ATP-dependent RNA helicase DED1)

HSP 1 Score: 290.041 bits (741), Expect = 8.162e-91
Identity = 162/364 (44.51%), Postives = 226/364 (62.09%), Query Frame = 0

Query:    2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGK----------RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            +F +  LDP ++  ++ S +T P+P+Q  ++P V +G D++A AQTG+GKT GF  P+L     +G             +   P ALV+ PTREL +Q+ E  +K  Y S + P     +V+GG  I  QI  L RG D+LVATPGRL DL ++G +SL+ I+ LVLDEADRMLDMGF   I+ +++   MP  + RQTL+FSATF ++I+ LA   L + + + V    +T+E I QKV + E  +K  +L  L+   +    ++FT TK  A+ L + L   GF + AIHG++SQ  R KAL  FKSG   ILVAT VAARG+DI  + +VVNY+LP   +DYVHRIGRTGRAG  G+A + 
Sbjct:  170 AFTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPC----VVYGGADIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDDEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAF 529

[Close]

BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|122300890|sp|Q088J2.1|RHLB_SHEFN (RecName: Full=ATP-dependent RNA helicase RhlB)

HSP 1 Score: 283.878 bits (725), Expect = 8.245e-91
Identity = 165/418 (39.47%), Postives = 242/418 (57.89%), Query Frame = 0

Query:    3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL-QILSTSG-KRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQT---TQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRPQRPRR--PGQGGQGGGQRGPGGQGRN 411
            F    L P +L A+  +G+   +PIQA ++P +L   DI   AQTGTGKT  F +     +L+ +  + + AT PRA+++ PTRELA Q+ +      ++L  A T     IV+GG     Q A L +GVD+L+ T GR++D  +QGVISL+ I+ +VLDEADRM D+GFI DI+ L + MP  K R  +LFSAT S +++ LA   + +P  +E+ P   T++ I +++++    DK+RLL  LIEE   ++ +VF+ TKH   +L   L   G     + G+  Q  R + LE F SGEI +LVATDVAARG+ I+ + +V NY+LP   EDYVHRIGRTGRAG+ G+++S          P+++   +N++  V N        +   P R  R  P    + GG +G    G N
Sbjct:   11 FADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKD-----AKLLAAHTGLKVGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLLSLIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFACEEYALNLPEIE-TYINHSIPVSNYDKDALLDDIPPPARIHRKPPTSRTRDGGSKGAHRSGGN 422

[Close]

BLAST of atp-dependent rna helicase vs. nr
Match: gi|1198235011|ref|WP_086900249.1| (ATP-dependent RNA helicase RhlE [Kushneria marisflavi] >gi|1197437593|gb|ART63038.1| ATP-dependent RNA helicase RhlE [Kushneria marisflavi])

HSP 1 Score: 476.863 bits (1226), Expect = 1.410e-163
Identity = 237/355 (66.76%), Postives = 282/355 (79.44%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTS--GKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351
            MSF  LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS    G ++     RAL++TPTRELAAQ+GES++KYG  L P   + +V+GGVK+NPQIARL+ GVDVLVA PGRLLDL  Q  + L ++E LVLDEADRMLDMGFIHDIKK+L+L+PKKRQ LLFSATFSKEIR LA  LL NPVSI+VAPRNT AE +DQ +Y  EK  ++ LL  LI   +W+Q LVFT TKH ANR+T+ L K G  + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK   DYVHRIGRTGRAG +G AVSL  PD
Sbjct:    1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSREPQGHKRPV---RALILTPTRELAAQIGESVEKYGVHLKPRLKSDVVYGGVKVNPQIARLRDGVDVLVACPGRLLDLVNQKAVRLDQVETLVLDEADRMLDMGFIHDIKKILRLVPKKRQNLLFSATFSKEIRELAGTLLDNPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352

[Close]

BLAST of atp-dependent rna helicase vs. nr
Match: gi|1343579608|gb|PPD49857.1| (ATP-dependent RNA helicase RhlE [Methylobacter sp.])

HSP 1 Score: 474.937 bits (1221), Expect = 1.708e-163
Identity = 239/362 (66.02%), Postives = 281/362 (77.62%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD 362
            M F +LGL   LLRA+  +GYT+PSPIQAQAIPAVL G+D+LAAAQTGTGKTAGF+LP+L  LS     KN    R L++TPTRELAAQVGES+ KYG+ L P   T+IVFGGVKINPQ+ RL+ GVD+LVATPGRLLDL  Q  + L ++E L+LDEADRMLDMGFI DI+K++ L PKKRQ LLFSATFS++IR L  GLL+NP+ IEVAPRNT AE ++Q  Y   K  K  LL  LI+  +W QVLVFTTTKH ANRLTE+L  +G  + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDI  LP+VVN+ELPKV EDYVHRIGRTGRAG+ G A+SL   + V A   V+
Sbjct:    1 MPFTTLGLSDPLLRAIADAGYTTPSPIQAQAIPAVLNGHDVLAAAQTGTGKTAGFTLPILHRLSQKSYDKNRPV-RCLILTPTRELAAQVGESVGKYGAHLHPRLKTEIVFGGVKINPQMMRLRGGVDILVATPGRLLDLLSQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIALCPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQIAYLTNKASKTGLLCHLIKTNDWQQVLVFTTTKHGANRLTEKLNNVGIKAAAIHGNKSQGARTSALAGFKAGEIRVLVATDVAARGIDIALLPHVVNFELPKVPEDYVHRIGRTGRAGEEGQAISLISHDEVNALRQVE 361

[Close]

BLAST of atp-dependent rna helicase vs. nr
Match: gi|1348907824|ref|WP_104423713.1| (ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum] >gi|1346752325|gb|PPK71841.1| ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum])

HSP 1 Score: 474.937 bits (1221), Expect = 1.946e-163
Identity = 231/349 (66.19%), Postives = 278/349 (79.66%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            M F +LGL   LLRA+  +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L  LS      N    R L++TPTRELAAQ+GES+ KYG+ L P   +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL  Q  + L ++E L+LDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS++IR L  GLL+NP+ IEVAPRNT AE ++Q  Y   K +K  LL  LI+E +W QVLVFTTTKH ANRLTE+L K+   + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+  EDYVHRIGRTGRAG+ G A+SL
Sbjct:    1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYTNNRPV-RVLILTPTRELAAQIGESVSKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIALLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWRQVLVFTTTKHGANRLTEKLNKINIKAAAIHGNKSQGARTSALAGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348

[Close]

BLAST of atp-dependent rna helicase vs. nr
Match: gi|1093981390|ref|WP_070979946.1| (ATP-dependent RNA helicase RhlE [Kushneria sp. YCWA18] >gi|1092294756|gb|OHV08775.1| ATP-dependent RNA helicase RhlE [Kushneria sp. YCWA18])

HSP 1 Score: 476.093 bits (1224), Expect = 2.264e-163
Identity = 257/428 (60.05%), Postives = 304/428 (71.03%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILS---TSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PDG-------NRVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRP-----QRPRRPGQGGQGGGQRGPGGQGRN 411
            MSF  LGL P LLRAVE++GY +PSPIQA+AIPA L G D+LAAAQTGTGKTAGF+LP+LQ LS    +G+R      RAL++TPTRELAAQV ES++KYG+ LSP   + +V+GGVKINPQI RL+ GVD+LVA PGRLLDL  Q  + L ++E LVLDEADRMLDMGFIHDI+K+LKL+P++RQTLLFSATFS EIR LA+ LL  PVSI+VAPRNT AE +DQ VY  +K  K  LL  LI + +  Q LVFT TKH ANR+T+ L K G  + AIHGNKSQNART AL GFKSGE+RILVATDVAARGIDI  LP+V+N+ELP V  DYVHRIGRTGRAG +G A+SL  PD         R+  KP     S N+ A           G    P     +R  RP  G +    RG GG+ RN
Sbjct:    1 MSFSELGLAPELLRAVEAAGYHTPSPIQAKAIPACLEGRDVLAAAQTGTGKTAGFTLPILQRLSRQPVTGRR----AVRALILTPTRELAAQVHESVEKYGAALSPRLESDVVYGGVKINPQINRLREGVDILVACPGRLLDLVSQKAVRLDQVETLVLDEADRMLDMGFIHDIRKILKLVPQQRQTLLFSATFSSEIRQLADKLLDQPVSIDVAPRNTAAETVDQSVYKIDKPSKTALLVHLIRQQQLEQALVFTATKHMANRVTKNLQKAGITAAAIHGNKSQNARTSALNGFKSGEVRILVATDVAARGIDIAHLPHVINFELPNVPADYVHRIGRTGRAGASGSAMSLVAPDERDQLKGIERLIGKPVPVHESKNFDARAVQEELSSAGGQTEDPGPPGQRRNARPAGGQRQQRSRGQGGRERN 424

[Close]

BLAST of atp-dependent rna helicase vs. nr
Match: gi|1197586166|ref|WP_086621375.1| (ATP-dependent RNA helicase RhlE [Kushneria konosiri] >gi|1196021791|gb|ARS52618.1| ATP-dependent RNA helicase RhlE [Kushneria konosiri])

HSP 1 Score: 475.322 bits (1222), Expect = 5.707e-163
Identity = 237/354 (66.95%), Postives = 282/354 (79.66%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351
            MSF  LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS   K +    P RAL++TPTRELAAQ+GES++KYG  L P   + +V+GGVK+NPQIARL+ GVDVLVA PGRLLDL  Q  + L ++E LVLDEADRMLDMGFIHDIKK+L+L+PK+RQ LLFSATFSKEIR LA  LL NPVSI+VAPRNT AE +DQ +Y  EK  ++ LL  LI   +W+Q LVFT TKH ANR+T+ L K G  + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK   DYVHRIGRTGRAG +G AVSL  PD
Sbjct:    1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSR--KPQGHKRPVRALILTPTRELAAQIGESVEKYGVHLKPRLKSDVVYGGVKVNPQIARLRDGVDVLVACPGRLLDLVNQKAVRLDQVETLVLDEADRMLDMGFIHDIKKILRLVPKQRQNLLFSATFSKEIRELAGTLLNNPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352

[Close]

BLAST of atp-dependent rna helicase vs. nr
Match: gi|1222075770|ref|WP_090132494.1| (ATP-dependent RNA helicase RhlE [Kushneria avicenniae] >gi|1097387640|emb|SFC47209.1| ATP-dependent RNA helicase RhlE [Kushneria avicenniae])

HSP 1 Score: 473.781 bits (1218), Expect = 2.043e-162
Identity = 238/356 (66.85%), Postives = 282/356 (79.21%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILST---SGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351
            MSF  LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS    SGKR      RAL++TPTRELAAQ+GES++KYG  LSP   + +V+GGVK+NPQI RL+ GVD+LVA PGRLLDL  Q  + L E+E LVLDEADRMLDMGFIHDIKK+L+L+P KRQ LLFSATFSKEIR LA  LL +PVSI+VAPRNT AE +DQ +Y  EK  ++ LL  LI   +W+Q LVFT TKH ANR+T+ L K G  + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK   DYVHRIGRTGRAG +G AVSL  PD
Sbjct:    1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSRQPRSGKRPV----RALILTPTRELAAQIGESVEKYGVHLSPRLKSDVVYGGVKVNPQITRLRDGVDILVACPGRLLDLVGQKAVRLDEVETLVLDEADRMLDMGFIHDIKKILRLVPGKRQNLLFSATFSKEIRELAGTLLNDPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352

[Close]

BLAST of atp-dependent rna helicase vs. nr
Match: gi|652888017|ref|WP_027148013.1| (ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum])

HSP 1 Score: 472.241 bits (1214), Expect = 2.346e-162
Identity = 230/349 (65.90%), Postives = 277/349 (79.37%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            M F +LGL   LLRA+  +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L  LS      N    R L++TPTRELAAQ+GES+ KYG+ L P   +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL  Q  + L ++E L+LDEADRMLDMGFI DI+K++  +PKKRQ LLFSATFS++IR L  GLL+NP+ IEVAPRNT AE ++Q  Y   K +K  LL  LI+E +W QVLVFTTTKH ANRLTE+L K+   + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+  EDYVHRIGRTGRAG+ G A+SL
Sbjct:    1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYGNNRPV-RVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348

[Close]

BLAST of atp-dependent rna helicase vs. nr
Match: gi|493946465|ref|WP_006890407.1| (RNA helicase [Methylobacter tundripaludum] >gi|344262165|gb|EGW22436.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] >gi|1346757703|gb|PPK77119.1| ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum])

HSP 1 Score: 472.241 bits (1214), Expect = 2.734e-162
Identity = 230/349 (65.90%), Postives = 277/349 (79.37%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            M F +LGL   LLRA+  +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L  LS      N    R L++TPTRELAAQ+GES+ KYG+ L P   +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL  Q  + L ++E L+LDEADRMLDMGFI DI+K++  +PKKRQ LLFSATFS++IR L  GLL+NP+ IEVAPRNT AE ++Q  Y   K +K  LL  LI+E +W QVLVFTTTKH ANRLTE+L K+   + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+  EDYVHRIGRTGRAG+ G A+SL
Sbjct:    1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYGNNRPV-RVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348

[Close]

BLAST of atp-dependent rna helicase vs. nr
Match: gi|647287549|ref|WP_025732497.1| (hypothetical protein [Carnimonas nigrificans])

HSP 1 Score: 473.396 bits (1217), Expect = 5.568e-162
Identity = 238/349 (68.19%), Postives = 279/349 (79.94%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349
            MSF SLGL PAL RAV+ +GYT+PSPIQA+AIP  L G D+LAAAQTGTGKTAGF+LP+LQ L+ + +R+   +PRAL++TPTRELAAQ+ ESL  Y   LSP   + +VFGGVKINPQI RL+RGVDVLVA PGRLLDL  Q  +SL  IE LVLDEADRMLDMGF+HDIK++LKL+P KRQ LLFSATFS EIRTL E +L NPVSI+VAPRN+ AE ++Q VY  +K  K  LL  LI++    QVLVFT TKH ANR+T+RL + G ++ AIHGNKSQNART+AL GFKSG I +LVATDVAARGIDI QLP V+N+ELPK + DYVHRIGRTGRAG  G AVSL
Sbjct:    1 MSFASLGLLPALKRAVDDAGYTTPSPIQAKAIPVALEGRDVLAAAQTGTGKTAGFALPILQRLALTPERQ-GKSPRALILTPTRELAAQIHESLVAYSEHLSPRLRSDVVFGGVKINPQIERLQRGVDVLVACPGRLLDLVSQKAVSLNHIETLVLDEADRMLDMGFVHDIKRILKLLPAKRQNLLFSATFSAEIRTLTESILHNPVSIDVAPRNSAAETVEQAVYKIDKPLKSALLIHLIKQQSLTQVLVFTATKHMANRVTQRLERAGISAAAIHGNKSQNARTQALAGFKSGTINVLVATDVAARGIDIAQLPNVINFELPKAAPDYVHRIGRTGRAGAEGKAVSL 348

[Close]

BLAST of atp-dependent rna helicase vs. nr
Match: gi|1191468117|gb|OTE97297.1| (ATP-dependent RNA helicase RhlE [Crenothrix sp. D3])

HSP 1 Score: 469.544 bits (1207), Expect = 3.086e-161
Identity = 235/358 (65.64%), Postives = 278/358 (77.65%), Query Frame = 0

Query:    1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357
            M F  LGL   LLRA+  +GYT+PSPIQ QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L  LS   K  ++  P R L++TPTRELAAQVGES+ KYG  L P   T++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL  Q  + L ++E LVLDEADRMLDMGFI DI+K++  +PKKRQ LLFSATFS++IR L  GLL+NP+ IEVA RNT AE ++Q  Y   K +K  LL  LI+  +W QVLVFT+TKH ANRLT++L K+   + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVNYELP+   DYVHRIGRTGRAG+ G AVSL   + VAA
Sbjct:    1 MPFTKLGLSDPLLRAIAEAGYTTPSPIQLQAIPAVLNGHDLLAAAQTGTGKTAGFALPILHRLSQ--KHYSSNRPIRVLILTPTRELAAQVGESVSKYGEHLHPRLKTEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVNQNAVKLDQVETLVLDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRQLTTGLLVNPIKIEVAARNTAAETVEQIAYLCNKANKAELLCHLIKTNDWQQVLVFTSTKHGANRLTDKLNKLDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNYELPRAPADYVHRIGRTGRAGEEGQAVSLVSHDEVAA 356

The following BLAST results are available for this feature:

BLAST of atp-dependent rna helicase vs. L. salmonis genes
BLAST of atp-dependent rna helicase vs. SwissProt
BLAST of atp-dependent rna helicase vs. nr

BLAST of atp-dependent rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000002659	4.137e-53	33.82	supercontig:LSalAtl2s:LSalAtl2s153:555306:559625:1...	[more]
EMLSAG00000005732	3.372e-51	29.21	supercontig:LSalAtl2s:LSalAtl2s309:725565:728317:1...	[more]
EMLSAG00000012740	2.800e-48	32.22	supercontig:LSalAtl2s:LSalAtl2s967:89676:95604:1 g...	[more]
EMLSAG00000010227	3.143e-47	32.55	supercontig:LSalAtl2s:LSalAtl2s679:403636:405959:-...	[more]
EMLSAG00000000991	4.514e-44	31.77	supercontig:LSalAtl2s:LSalAtl2s116:1961290:1963414...	[more]

Pages

BLAST of atp-dependent rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|548730\|sp\|P25888.3\|RHLE_ECOLI	3.005e-153	63.71	RecName: Full=ATP-dependent RNA helicase RhlE	[more]
gi\|677995702\|sp\|B9XXL6.1\|RHPA_HELP8	6.597e-96	44.25	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]
gi\|81815103\|sp\|O25029.1\|RHPA_HELPY	7.671e-96	44.25	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]
gi\|32363412\|sp\|Q9HXE5.1\|RHLB_PSEAE	1.783e-95	41.85	RecName: Full=ATP-dependent RNA helicase RhlB >gi\|...	[more]
gi\|32363284\|sp\|Q887N8.1\|RHLB_PSESM	1.615e-92	41.69	RecName: Full=ATP-dependent RNA helicase RhlB	[more]
gi\|74659403\|sp\|Q6BU54.1\|DED1_DEBHA	2.503e-92	45.11	RecName: Full=ATP-dependent RNA helicase DED1	[more]
gi\|32363346\|sp\|Q8PFZ3.1\|RHLB_XANAC	6.214e-92	40.53	RecName: Full=ATP-dependent RNA helicase RhlB	[more]
gi\|32363291\|sp\|Q88NB7.1\|RHLB_PSEPK	1.412e-91	41.69	RecName: Full=ATP-dependent RNA helicase RhlB	[more]
gi\|223590230\|sp\|A5DQS0.3\|DED1_PICGU	8.162e-91	44.51	RecName: Full=ATP-dependent RNA helicase DED1	[more]
gi\|122300890\|sp\|Q088J2.1\|RHLB_SHEFN	8.245e-91	39.47	RecName: Full=ATP-dependent RNA helicase RhlB	[more]

Pages

BLAST of atp-dependent rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1198235011\|ref\|WP_086900249.1\|	1.410e-163	66.76	ATP-dependent RNA helicase RhlE [Kushneria marisfl...	[more]
gi\|1343579608\|gb\|PPD49857.1\|	1.708e-163	66.02	ATP-dependent RNA helicase RhlE [Methylobacter sp....	[more]
gi\|1348907824\|ref\|WP_104423713.1\|	1.946e-163	66.19	ATP-dependent RNA helicase RhlE [Methylobacter tun...	[more]
gi\|1093981390\|ref\|WP_070979946.1\|	2.264e-163	60.05	ATP-dependent RNA helicase RhlE [Kushneria sp. YCW...	[more]
gi\|1197586166\|ref\|WP_086621375.1\|	5.707e-163	66.95	ATP-dependent RNA helicase RhlE [Kushneria konosir...	[more]
gi\|1222075770\|ref\|WP_090132494.1\|	2.043e-162	66.85	ATP-dependent RNA helicase RhlE [Kushneria avicenn...	[more]
gi\|652888017\|ref\|WP_027148013.1\|	2.346e-162	65.90	ATP-dependent RNA helicase RhlE [Methylobacter tun...	[more]
gi\|493946465\|ref\|WP_006890407.1\|	2.734e-162	65.90	RNA helicase [Methylobacter tundripaludum] >gi\|344...	[more]
gi\|647287549\|ref\|WP_025732497.1\|	5.568e-162	68.19	hypothetical protein [Carnimonas nigrificans]	[more]
gi\|1191468117\|gb\|OTE97297.1\|	3.086e-161	65.64	ATP-dependent RNA helicase RhlE [Crenothrix sp. D3...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold1_size3401120	supercontig	scaffold1_size3401120:989238..990893 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold1_size3401120-processed-gene-10.1-mRNA-1	snap_masked-scaffold1_size3401120-processed-gene-10.1-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold1_size3401120:989238..990893-

gene from alignment at scaffold1_size3401120:989238..990893-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold1_size3401120-processed-gene-10.1 ID=snap_masked-scaffold1_size3401120-processed-gene-10.1|Name=atp-dependent rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=1656bp|location=Sequence derived from alignment at scaffold1_size3401120:989238..990893- (Tigriopus kingsejongensis)
ATGTCATTTGATTCTCTGGGCCTCGACCCAGCTTTGCTCCGTGCTGTTGA
GAGCTCGGGCTACACTTCGCCTTCGCCCATACAGGCGCAAGCCATACCGG
CGGTGCTCGCCGGAAACGACATCCTCGCTGCCGCACAGACTGGCACTGGG
AAAACTGCTGGATTCAGCCTGCCCTTACTGCAGATACTGTCCACCAGCGG
TAAACGCAAAAATGCGACTACTCCACGAGCACTGGTAGTCACCCCCACAC
GCGAGCTAGCCGCACAAGTGGGCGAGTCTCTGCAGAAGTACGGCAGCGAA
CTCAGCCCAGCCCAGACAACTCAAATTGTCTTCGGTGGCGTCAAGATCAA
CCCACAGATTGCCCGCCTCAAACGCGGCGTGGATGTCCTGGTTGCCACAC
CGGGTCGCCTTCTGGACTTGCAGCAACAGGGCGTGATCTCTTTAGCTGAG
ATCGAGATACTGGTTCTGGATGAAGCGGATCGCATGCTGGACATGGGTTT
TATCCATGACATCAAGAAGCTGCTCAAGCTAATGCCTAAAAAGCGCCAGA
CTTTGCTGTTCTCTGCGACCTTCTCAAAAGAAATTCGCACACTAGCTGAG
GGGCTGTTGATCAACCCCGTATCTATCGAAGTCGCGCCGCGTAACACCAC
GGCTGAGCGTATCGATCAGAAAGTCTACTTCGCCGAAAAGCACGACAAAA
TTCGCCTGTTAGGCGGGTTAATCGAGGAAGGTGAATGGAACCAGGTGCTG
GTCTTCACCACCACCAAACATTTTGCCAATCGCCTCACTGAGCGCCTGTG
CAAGATGGGCTTCAACAGCATGGCGATTCACGGCAACAAGAGCCAAAACG
CACGCACGAAAGCGCTGGAAGGCTTCAAGAGCGGTGAGATTCGCATACTG
GTTGCAACCGATGTCGCTGCGCGCGGTATCGACATCAACCAACTGCCTTA
CGTAGTCAACTACGAACTGCCGAAAGTCTCAGAAGACTATGTGCACCGTA
TTGGTCGTACCGGACGTGCCGGCAAAGCGGGCTTAGCCGTATCACTGGTG
AGTCGCGAAGAGCAAAATCTGCTGCGCTCAGTACAACGCGTCATCAAAAC
TGAAATCCCTGTCGGCACGTTGGATGGCTTTGAGCCTAGCGATGCGCCAC
CCAAGTCAGAGCAAGCTGAGCGCCCTCGCGGGCAACGCAATGCACAAGGC
AGCGGCCGAGGCAGAAATGCCAACGCGAGTGGTCGAAGCAACAGCAGCAG
TGGAAGCAGCAACAGCAATAGCCGTGGCAAATCCAACAGCTCTGGCCGCT
CTGCACAGACCGCTGAGAAGAGCGCTTCAGCCGAAGGTTCGTCGTCTAAT
CGTCGCAACAACGGCCCAAAACCAGCCCGCAAACCTCGGCCGGCCAATAG
CGAAGCCAAACCGCGTAGCGCCCCTCGCCCCACTAACCCTAACTCCGCTG
AGCCCGACGGCAATCGCGTCGCCGCCAAGCCAGATGTAGATGGCAACAGC
GTGAACTACACAGCTGATGTGGGTAATCGCCCCGCTTACGAGCCTACCGG
TAACGAGCGACGCCCGCAGCGTCCTCGTCGCCCTGGCCAAGGCGGACAAG
GCGGTGGCCAGCGTGGCCCAGGTGGTCAGGGCAGGAATCGTAACCGCTCT
GCCTAA

Synonyms

The feature 'atp-dependent rna helicase' has the following synonyms


Synonym
Tk04876

Add to Basket

Pages

Pages

Pages

Search form