atp-dependent rna helicase, snap_masked-scaffold1_size3401120-processed-gene-10.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000002659 (supercontig:LSalAtl2s:LSalAtl2s153:555306:559625:1 gene:EMLSAG00000002659 transcript:EMLSAT00000002659 description:"maker-LSalAtl2s153-augustus-gene-5.7") HSP 1 Score: 185.652 bits (470), Expect = 4.137e-53 Identity = 115/340 (33.82%), Postives = 188/340 (55.29%), Query Frame = 0 Query: 13 LRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPR----ALVVTPTRELAAQ---VGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAE-GLLINPVSIEVAPRN----TTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGR 339 L ++ G++ + IQAQ IP +L G D++ AA+TG+GKT F +P ++++ K PR ++++PTREL+ Q V L KY T +V GG N + +L +G++++VATPGRLLD L+ ++ L++DEADR+LD+GF ++KK+++L+PKKRQT+LFSAT +K+ L + L P+ I + N T ++Q ++ LL +++ +V+VF ++ E + +IHG + Q RT F + + IL+ TDVAARG+DI + ++V Y+ ++Y+HR+GRT R Sbjct: 131 LNGIQDMGFSQMTEIQAQTIPHLLEGRDLVGAAKTGSGKTLSFLIPAVELIY-----KLKFMPRNGTGVIIISPTRELSMQTFGVLRELLKYH-----CHTYGLVMGGANRNTEAQKLNKGINIVVATPGRLLDHLRNTKDFLYKNLQCLIIDEADRILDVGFEEEMKKIIQLLPKKRQTMLFSATTTKKTEDLVKLALKKEPIYIGIDSANDNGAATVSGLEQGYVICPSEKRLLLLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVQSIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPDVDWIVQYDPTDDPKEYIHRVGRTAR 460
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000005732 (supercontig:LSalAtl2s:LSalAtl2s309:725565:728317:1 gene:EMLSAG00000005732 transcript:EMLSAT00000005732 description:"maker-LSalAtl2s309-augustus-gene-7.79") HSP 1 Score: 180.259 bits (456), Expect = 3.372e-51 Identity = 104/356 (29.21%), Postives = 189/356 (53.09%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHD--------KIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 +F+ +L ++ +GY PSPIQ A+P LAG D L +++GTGKT + +L LS+ N + L++ PTRE+A Q +++ + G LS + + + GG+ + +LK+ + +PGR+ L ++GV++++++++ +LDEAD++ + F D+ +++ +P+ QTL SATF + L NP + + ++Q V + H K L LI + Q +VF A + ++L G+ ++ + G + Q R +L+ K+ RI++ TD++ARGID + +V+N+++P Y+HRIGR GR G G+A+++ Sbjct: 21 TFEHFQFQSPILEGLKVNGYQVPSPIQVSALPYTLAGLDXLVQSKSGTGKTLVY---VLSALSSIDVESNEL--QGLLIAPTREIAVQGAQTMLEIGGHLSKLKASTFI-GGMSVEEDKLKLKK-CHMAFGSPGRVKQLIEEGVMNVSQLKVFILDEADKLCEKSFKEDLSWIMRTLPEIHQTLALSATFPNSLENTLISKLKNPTHVRLGQDCQVLLGVNQFVLESPSHGLVKKVVDYKFESLLKLISNVSFEQCIVFCNYSLRARAICDKLNDRGWPAIFLAGMQEQKDRLNSLKDLKTFRCRIVLTTDLSARGIDARHVNFVINFDVPSQGTTYLHRIGRAGRYGSKGIALTI 369
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000012740 (supercontig:LSalAtl2s:LSalAtl2s967:89676:95604:1 gene:EMLSAG00000012740 transcript:EMLSAT00000012740 description:"augustus_masked-LSalAtl2s967-processed-gene-0.13") HSP 1 Score: 171.785 bits (434), Expect = 2.800e-48 Identity = 116/360 (32.22%), Postives = 192/360 (53.33%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGV-ISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPK---KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQK-VYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMG-FNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVS-LPDGNRV 355 +D G P L + SS Y +P+PIQAQ+IP +L G D+L +A TG+GKTA + LP+L + KN + +++ PTREL+ Q+ + K + P T++ K + Q G +VL++TP L+ L + G + L +E L++DE+D++ + ++ L ++ K + FSAT + ++ + L N VS+ + RN + + Q VY + K L LI +G VL+F A+ L E L K + IH ++S R A++ F++G +L+ T++ +RGID+ + V+NY+ P + Y+HR+GRTGRAG+ G AV+ D ++V Sbjct: 69 WDLSGSLPEGLIEMVSSLYPNPTPIQAQSIPIMLQGRDVLGSAPTGSGKTAAYLLPIL-----VNQEKNKL--KTIILCPTRELSHQIHQEALKL---IPPNYQTKVQVASSKKSNQ------GANVLISTPNTLVYLIKDGSSLDLKSLEWLIVDESDKLFEDKGKASFREQLAVVYKACMSSKKAFFSATLATDVENWCKTNLDNAVSVTIGIRNKACKDVKQSLVYTGSEKGKNYALTNLINDGIKPPVLIFVQDFERADELKEILTKQKKIKAEVIHSHRSLLQREDAIKTFRAGRTWVLICTELMSRGIDVKGVNLVINYDFPPSTVSYIHRVGRTGRAGRPGRAVTFFTDDDKV 412
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000010227 (supercontig:LSalAtl2s:LSalAtl2s679:403636:405959:-1 gene:EMLSAG00000010227 transcript:EMLSAT00000010227 description:"maker-LSalAtl2s679-augustus-gene-3.17") HSP 1 Score: 169.859 bits (429), Expect = 3.143e-47 Identity = 124/381 (32.55%), Postives = 196/381 (51.44%), Query Frame = 0 Query: 21 YTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQIL-STSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSP--AQTTQIVFGGVKINPQIARL-KRGVDVLVATPGRLLDLQQQGVISLAEIE------------ILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPR---NTTAERIDQKVYFAEKHDKIR----LLGGLIEEGEWNQVLVFTTT----KHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAG--LAVSLP------DGNRVAAKPDVDGNSV 366 + +PIQA AIP L D+ A A TG+GKT F +P+L+IL ++S + AL+++PTRELA+Q+ + L+ + S++ + G + + + K G +++ATPGRL D+ S+ +++ IL+LDEADR+L +GF I ++ +PK+R+T LFSAT +K++ L L NPV ++V N + I Y+ + + LL L E + +VF +T ++F+ L L A+HG K R K + FK ++ +LV TDV +RG+D + +VV ++ PK +E +VHRIGRT R+G G L + LP D ++ K D D V Sbjct: 33 FKKMTPIQAXAIPLFLGLKDVCAEAVTGSGKTLAFVIPILEILLNSSNEESKVHDIGALILSPTRELASQISQVLEVFLSKIPSLNSLLIIGGGGSSSVGETLRKFEKEGAKIIIATPGRLEDILTGKTESINQLKAEKMARGFKSTKILILDEADRLLRLGFETAINTIISFLPKQRRTSLFSATQTKDLDELIRAGLRNPVLVKVKEHGKENELSTPIKLTNYYMKCDPPAKKFATLLKFLKTEAAGKKTMVFFSTCACVEYFSTLLERFLKDDNTPVFALHGQKG-GTRFKIFDKFKKLDMGVLVCTDVLSRGVDFPDVEWVVQFDAPKTAEAFVHRIGRTARSGAVGNALLLLLPTEDSYIDFIKINQKVDFDKMEV 412
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000000991 (supercontig:LSalAtl2s:LSalAtl2s116:1961290:1963414:1 gene:EMLSAG00000000991 transcript:EMLSAT00000000991 description:"maker-LSalAtl2s116-augustus-gene-19.39") HSP 1 Score: 161.384 bits (407), Expect = 4.514e-44 Identity = 122/384 (31.77%), Postives = 194/384 (50.52%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPK------KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTA---------------ERIDQKVYFAEKHDKIRLLGGLIEEGEWN-------QVLVFTTTKH---FANRLTER--LCKMGFN--SMAIHGNKSQNARTKALEGFK---SGEIR---ILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAG 344 FD G+ P +++ ++S G + P+ +Q+ IP +LAG D+L QTG+GK +LPLL L A TP ++ G + + + P ++ GG K + ARL++G+++LV+TPGRLLD + + + L++I LV DEADRMLD+G+ D+ ++ + + KRQT+L SAT ++ IR L+E L +P +++ + + E + Q ++ L I W ++L+F T+ + + L E+ + G N M +HGN Q RTK F+ SG I +L+ TDVAARG+D+ ++ ++V Y P + DYVHRIGRT R G G Sbjct: 95 FDGHGIHPYIIKNLDSMGISRPTAVQSATIPRILAGKDVLVKXQTGSGKXLAXALPLLHSL-------QAITP---------QIHRDSG-----FFARIVPG----VLHGGEKRKSEKARLRKGLNILVSTPGRLLDHIHKTKTLDLSKIHYLVFDEADRMLDLGYERDVNDIINAISENSSEEIKRQTILLSATLTQGIRQLSEVSLKHPDYVDITSTDGNSVMAISDDLQVDTAVPENLQQTFIVVPAKLRLITLSSFIL---WKCGGKSMKKILIFLATQDMVDYHHTLFEQSLYSEEGKNIKFMKLHGNMDQGERTKVFNDFREIDSGVISSGLVLLCTDVAARGLDLPKVDWIVQYNPPISTADYVHRIGRTARIGLKG 450
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|548730|sp|P25888.3|RHLE_ECOLI (RecName: Full=ATP-dependent RNA helicase RhlE) HSP 1 Score: 444.121 bits (1141), Expect = 3.005e-153 Identity = 223/350 (63.71%), Postives = 269/350 (76.86%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 MSFDSLGL P +LRAV GY P+PIQ QAIPAVL G D++A+AQTGTGKTAGF+LPLLQ L T P RAL++TPTRELAAQ+GE+++ Y L+ + +VFGGV INPQ+ +L+ GVDVLVATPGRLLDL+ Q + L ++EILVLDEADRMLDMGFIHDI+++L +P KRQ LLFSATFS +I+ LAE LL NP+ IEVA RNT ++++ Q V+F +K K LL +I +G W QVLVFT TKH AN L E+L K G S AIHGNKSQ ART+AL FKSG+IR+LVATD+AARG+DI +LP+VVNYELP V EDYVHRIGRTGRA G A+SL Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNI--RSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSL 348
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|677995702|sp|B9XXL6.1|RHPA_HELP8 (RecName: Full=DEAD-box ATP-dependent RNA helicase RhpA) HSP 1 Score: 298.901 bits (764), Expect = 6.597e-96 Identity = 154/348 (44.25%), Postives = 222/348 (63.79%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 SF+ LGL ++L++V +G+TSPSPIQ +AIPAVL G D++A AQTGTGKTA F+LP++ L KN T ALV+TPTRELA Q+ + + K G T V+GG + Q +K+ V++ATPGRLLD + I +++VLDE+D MLDMGF+ DI+++ +P + Q LLFSAT + I+ LA+ +L NP+ I +AP N T I Q+ Y +H++ + L++ + +VFT TK A+ L + L + S A+HG+ Q R ++ FK + +LVATDVA+RG+DI+ + +V NY LP +E Y+HRIGRTGRAGK G+A++L Sbjct: 21 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL------KNNHTIEALVITPTRELAMQISDEIFKLGKHTR--TKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL 360
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|81815103|sp|O25029.1|RHPA_HELPY (RecName: Full=DEAD-box ATP-dependent RNA helicase RhpA) HSP 1 Score: 298.901 bits (764), Expect = 7.671e-96 Identity = 154/348 (44.25%), Postives = 222/348 (63.79%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 SF+ LGL ++L++V +G+TSPSPIQ +AIPAVL G D++A AQTGTGKTA F+LP++ L KN T ALV+TPTRELA Q+ + + K G T V+GG + Q +K+ V++ATPGRLLD + I +++VLDE+D MLDMGF+ DI+++ +P + Q LLFSAT + I+ LA+ +L NP+ I +AP N T I Q+ Y +H++ + L++ + +VFT TK A+ L + L + S A+HG+ Q R ++ FK + +LVATDVA+RG+DI+ + +V NY LP +E Y+HRIGRTGRAGK G+A++L Sbjct: 21 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL------KNNHTIEALVITPTRELAMQISDEIFKLGKHTR--TKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL 360
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363412|sp|Q9HXE5.1|RHLB_PSEAE (RecName: Full=ATP-dependent RNA helicase RhlB >gi|122261039|sp|Q02S21.1|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase RhlB >gi|226739542|sp|B7UUT0.1|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 294.664 bits (753), Expect = 1.783e-95 Identity = 154/368 (41.85%), Postives = 228/368 (61.96%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL-QILSTSG-KRKNATTPRALVVTPTRELAAQVGE---SLQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD 362 F L P+L+ A+ G+ +PIQAQ + L G D + AQTGTGKTA F + ++ Q+L T K + PRAL++ PTREL Q+ + +L KY GG+ + Q+ +L+ R D+LVATPGRLLD Q+G + L +E++VLDEADRMLDMGFI ++++++ P K RQTLLFSATF+ ++ LA+ ++P +E+ P N ++ ++Q VY DK +LL L+ + W +V+VF K R+ ERL K G ++ + G+ Q+ R + LEGF+ G+IR+LVATDVA RGI I+ + +V+N+ LP+ +DYVHRIGRTGRAG +G ++S + A P ++ Sbjct: 11 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-----GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIE 373
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363284|sp|Q887N8.1|RHLB_PSESM (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 286.96 bits (733), Expect = 1.615e-92 Identity = 148/355 (41.69%), Postives = 221/355 (62.25%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSG--KRKNATTPRALVVTPTRELAAQVGES---LQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 F L P L+ A++ G+ +PIQA + L G D + AQTGTGKTA F + +++ L+ + + PRAL++ PTREL Q+ + L KY + GG+ + Q+ +L+ R D+LVATPGRLLD Q+G + L +E++VLDEADRMLDMGFI ++++++ P K RQTLLFSATF++++ LA+ +P +E+ N ++ ++Q +Y DK +LL L+ + W +V+VF K R+ ERL + G N+ + G+ Q+ R K LEGF+ G+IR+LVATDVA RGI I+ + +V+N+ LP+V +DYVHRIGRTGRAG G+++S Sbjct: 10 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTN-----LNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISF 359
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|74659403|sp|Q6BU54.1|DED1_DEBHA (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 293.893 bits (751), Expect = 2.503e-92 Identity = 166/368 (45.11%), Postives = 232/368 (63.04%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL---------QILSTSGK-RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGN 353 +F + LDP L+ V+ S +T P+P+Q ++P V AG D++A AQTG+GKT GF P+L ++ T+G + P ALV+ PTREL +Q+ + +K Y S + P+ +V+GG I QI L+RG D+LVATPGRL DL ++G +SLA I+ LVLDEADRMLDMGF I+ +++ MP + RQTL+FSATF KEI+ LA L + + V +T+E I QK+ + E +K +L L+ + ++FT TK A+ L + L GF + AIHG++SQ R KAL FK+G ILVAT VAARG+DI + ++VNY+LP +DYVHRIGRTGRAG G+A + + N Sbjct: 157 AFTAPPLDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAEVPETAGAFSSHKVYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPS----VVYGGADIGGQIRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVEDRQTLMFSATFPKEIQFLARDFLKEYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKTGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRTGRAGNIGIATAFFNRN 520
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363346|sp|Q8PFZ3.1|RHLB_XANAC (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 291.197 bits (744), Expect = 6.214e-92 Identity = 167/412 (40.53%), Postives = 241/412 (58.50%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQ--ILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPTGNER---RPQRPRRPGQGGQGGGQRG 404 ++F S L PAL+ +ES+G+T +PIQA +P L G D+ AQTGTGKT F + ++ ++ + + PRAL++ PTRELA Q+ + K+G++L +V+GGV + Q L++GVDV++ATPGRL+D ++Q V+SL EI VLDEADRM D+GFI DI+ LL+ MP++ RQTLLFSAT S + LA + P + V + TA R+ Q++YF +K LL GL+ E + +VF TK F R+ L + G+ + G+ Q R L F+ G++ ILVATDVAARG+ I+ + YV NY+LP +EDYVHRIGRT R G+ G A+S + PD++ A + + EP +E P+ PR P +G + G Sbjct: 9 VTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL--GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIE-------AYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAG 411
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|32363291|sp|Q88NB7.1|RHLB_PSEPK (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 284.648 bits (727), Expect = 1.412e-91 Identity = 148/355 (41.69%), Postives = 216/355 (60.85%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSG--KRKNATTPRALVVTPTRELAAQVGE---SLQKYGSELSPAQTTQIVFGGVKINPQIARLK-RGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 F L L+ A+ G+ +PIQAQ + L G D + AQTGTGKTA F + ++ L + K + PRAL++ PTREL Q+ + +L KY GG+ + Q+ L+ R D+LVATPGRLLD Q+G + L +E++VLDEADRMLDMGFI ++++++ P K RQTLLFSATF+ ++ LA+ NP +E+ P N +E ++Q VY DK +LL L+ + +W +V+VF K R+ E+L + G N+ + G+ Q+ R + LE F+ G I +LVATDVA RGI I+ + +V+N+ LP+ +DYVHRIGRTGRAG +G+++S Sbjct: 11 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-----GLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISF 360
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|223590230|sp|A5DQS0.3|DED1_PICGU (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 290.041 bits (741), Expect = 8.162e-91 Identity = 162/364 (44.51%), Postives = 226/364 (62.09%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGK----------RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 +F + LDP ++ ++ S +T P+P+Q ++P V +G D++A AQTG+GKT GF P+L +G + P ALV+ PTREL +Q+ E +K Y S + P +V+GG I QI L RG D+LVATPGRL DL ++G +SL+ I+ LVLDEADRMLDMGF I+ +++ MP + RQTL+FSATF ++I+ LA L + + + V +T+E I QKV + E +K +L L+ + ++FT TK A+ L + L GF + AIHG++SQ R KAL FKSG ILVAT VAARG+DI + +VVNY+LP +DYVHRIGRTGRAG G+A + Sbjct: 170 AFTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPC----VVYGGADIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDDEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAF 529
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|122300890|sp|Q088J2.1|RHLB_SHEFN (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 283.878 bits (725), Expect = 8.245e-91 Identity = 165/418 (39.47%), Postives = 242/418 (57.89%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLL-QILSTSG-KRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQT---TQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRPQRPRR--PGQGGQGGGQRGPGGQGRN 411 F L P +L A+ +G+ +PIQA ++P +L DI AQTGTGKT F + +L+ + + + AT PRA+++ PTRELA Q+ + ++L A T IV+GG Q A L +GVD+L+ T GR++D +QGVISL+ I+ +VLDEADRM D+GFI DI+ L + MP K R +LFSAT S +++ LA + +P +E+ P T++ I +++++ DK+RLL LIEE ++ +VF+ TKH +L L G + G+ Q R + LE F SGEI +LVATDVAARG+ I+ + +V NY+LP EDYVHRIGRTGRAG+ G+++S P+++ +N++ V N + P R R P + GG +G G N Sbjct: 11 FADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKD-----AKLLAAHTGLKVGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLLSLIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFACEEYALNLPEIE-TYINHSIPVSNYDKDALLDDIPPPARIHRKPPTSRTRDGGSKGAHRSGGN 422
BLAST of atp-dependent rna helicase vs. nr
Match: gi|738295302|ref|WP_036248925.1| (ATP-dependent RNA helicase RhlE [Methylobacter sp. BBA5.1]) HSP 1 Score: 466.463 bits (1199), Expect = 4.389e-160 Identity = 237/358 (66.20%), Postives = 279/358 (77.93%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 MSF +LGL LLRA+ +GYT PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS K A P R L++TPTRELAAQVGES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL Q + L ++E LVLDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS +IR L GLL+NPV IEVAPRNT AE ++Q VY K K LL LI+E +W QVLVFT+TKH ANRLTE+L K + AIHGNKSQ ART AL GFK+GE+R+LVATDVAARGIDI LP+VVN+ELP+ DYVHRIGRTGRAG+ G AVSL + +A Sbjct: 1 MSFSTLGLSDPLLRAIAEAGYTRPSPIQSQAIPAVLKGHDLLAAAQTGTGKTAGFTLPILHRLSE--KSYGANRPIRVLILTPTRELAAQVGESVAKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVNQNAVKLDKVETLVLDEADRMLDMGFIRDIRKIIALLPKKRQNLLFSATFSDDIRKLTTGLLVNPVKIEVAPRNTAAELVEQIVYTVNKPQKAELLCRLIKENDWRQVLVFTSTKHGANRLTEKLNKTDIKAAAIHGNKSQGARTSALAGFKAGELRVLVATDVAARGIDIALLPHVVNFELPRAPADYVHRIGRTGRAGEEGQAVSLVSHDEYSA 356
BLAST of atp-dependent rna helicase vs. nr
Match: gi|496588293|ref|WP_009286911.1| (MULTISPECIES: DEAD-like helicase [Halomonas] >gi|445565565|gb|ELY21674.1| DEAD-like helicase [Halomonas titanicae BH1] >gi|532588911|emb|CDG55047.1| ATP-dependent RNA helicase RhlE [Halomonas sp. A3H3] >gi|751766565|gb|KIN14394.1| ATP-dependent RNA helicase RhlE [Halomonas sp. KHS3] >gi|1087014153|emb|SDI61871.1| ATP-dependent RNA helicase RhlE [Halomonas sp. DSM 26667] >gi|1305099611|gb|PKH61256.1| ATP-dependent RNA helicase RhlE [Halomonas sp. Choline-3u-9]) HSP 1 Score: 466.463 bits (1199), Expect = 4.518e-160 Identity = 249/416 (59.86%), Postives = 301/416 (72.36%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPT------------GNERRPQRPRRP-GQGGQGGGQR 403 MSF LGL LLRAV + GYT P+PIQ QAIP VL G D+LA+AQTGTGKTAGF+LP+LQ L+T GKR RALV+TPTRELAAQVGES+ YG L A + I+FGGV PQI LK G+DVLVATPGRLLDL QQG + L+ +EILVLDEADRMLDMGFIHDIK+LL+L+PKKRQ LLFSATFS EI+TLA+ LL NP IEVAPRN TA++I+Q +Y ++ K LL LI++ W QVLVFT TKH ANRL E+L K SMAIHGNKSQ ART+AL FKSG++++LVATD+AARG+DIN+LP+VVN++LP V+EDYVHRIGRTGRAG G AVSL + A +++ + P +EP N+R+P+ R+P GQ GG+R Sbjct: 1 MSFSELGLHADLLRAVTAQGYTEPTPIQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQRLNT-GKRPTKRQVRALVLTPTRELAAQVGESVSTYGQHL--ALRSHIIFGGVGQQPQIDALKAGLDVLVATPGRLLDLHQQGHVDLSCVEILVLDEADRMLDMGFIHDIKRLLRLVPKKRQNLLFSATFSNEIQTLAQQLLDNPAMIEVAPRNATADKIEQAIYRVDREKKRELLAHLIQQNGWFQVLVFTRTKHGANRLAEQLSKQDIPSMAIHGNKSQGARTRALTAFKSGDLQVLVATDIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGEAVSLVCVDEDALLGNIE-RLIKQKLTKHIEPGFEPDPSIKPEPIENGRRNQRQPRAKRKPEGQSANTGGER 412
BLAST of atp-dependent rna helicase vs. nr
Match: gi|519002079|ref|WP_020157954.1| (MULTISPECIES: RNA helicase [Methylobacter]) HSP 1 Score: 466.463 bits (1199), Expect = 4.686e-160 Identity = 237/358 (66.20%), Postives = 279/358 (77.93%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 MSF +LGL LLRA+ +GYT PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS K A P R L++TPTRELAAQVGES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL Q + L ++E LVLDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS +IR L GLL+NPV IEVAPRNT AE ++Q VY K K LL LI+E +W QVLVFT+TKH ANRLTE+L K + AIHGNKSQ ART AL GFK+GE+R+LVATDVAARGIDI LP+VVN+ELP+ DYVHRIGRTGRAG+ G AVSL + +A Sbjct: 1 MSFSTLGLSDPLLRAIAEAGYTRPSPIQSQAIPAVLKGHDLLAAAQTGTGKTAGFTLPILHRLSE--KSYGANRPIRVLILTPTRELAAQVGESVAKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVNQNAVKLDKVETLVLDEADRMLDMGFIRDIRKIIALLPKKRQNLLFSATFSDDIRKLTTGLLVNPVKIEVAPRNTAAELVEQIVYTVNKPQKAELLCRLIKENDWRQVLVFTSTKHGANRLTEKLNKTDIKAAAIHGNKSQGARTSALAGFKAGELRVLVATDVAARGIDIALLPHVVNFELPRAPADYVHRIGRTGRAGEEGQAVSLVSHDEYSA 356
BLAST of atp-dependent rna helicase vs. nr
Match: gi|759736345|ref|WP_043447071.1| (ATP-dependent RNA helicase RhlE [Halotalea alkalilenta]) HSP 1 Score: 467.233 bits (1201), Expect = 4.925e-160 Identity = 252/418 (60.29%), Postives = 301/418 (72.01%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PDGN-------RVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRPQR-PRRP-GQGGQGGGQRGPGG 407 MSF SLGL P L RAV+ +GYT PSPIQA+AIPA L G D+LAAAQTGTGKTAGF+LP+LQ LS +N RAL++ PTRELAAQV S+++YG L+P +++VFGGVKINPQI RL+ GVD+LVA PGRLLDL Q + L ++E LVLDEADRMLDMGF+ DIK++L L+P KRQ LLFSATFSKEIRTL + +L +PV+IEVAPRN AE + Q VY K K LL LI++ EW QVLVFT TKH ANR+T+RL K G ++ AIHGNKSQNART AL GFKSG + +LVATDVAARGIDI+QLP V+N+ELP V DYVHRIGRTGRAG +G AVSL PD R+ +KP + A G P+ ER P+R PR+P GQG +G Q G Sbjct: 1 MSFSSLGLTPELQRAVDDAGYTEPSPIQAKAIPACLEGRDVLAAAQTGTGKTAGFTLPILQRLSARAYTRNRPV-RALILAPTRELAAQVHASVEQYGQYLNPRLKSEVVFGGVKINPQIERLRDGVDILVACPGRLLDLVGQRAVRLDQVETLVLDEADRMLDMGFLRDIKRVLALLPAKRQNLLFSATFSKEIRTLTQSILKDPVTIEVAPRNAAAESVSQAVYKVPKPAKSALLIHLIKQHEWKQVLVFTATKHMANRVTQRLEKAGISAAAIHGNKSQNARTNALAGFKSGTVEVLVATDVAARGIDISQLPNVINFELPNVPADYVHRIGRTGRAGASGQAVSLVSPDEQDQLRQIERLISKP------IEVIAPEGFDPST--VVVEREPERPPRQPRGQGRRGAPQSARSG 409
BLAST of atp-dependent rna helicase vs. nr
Match: gi|652905290|ref|WP_027159297.1| (ATP-dependent RNA helicase RhlE [Methylobacter luteus]) HSP 1 Score: 466.463 bits (1199), Expect = 5.654e-160 Identity = 232/357 (64.99%), Postives = 277/357 (77.59%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 M F +LGL LLRA+ +GYT PSPIQ+QAIPAVL G D+LAAAQTGTGKTAGF+LP+L LS N R L++TPTRELAAQVGES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL Q + L ++E LVLDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS +IR L GLL+NPV IEVAPRNT AE ++Q VY K K LL L++E +W QVLVFT+TKH ANRLTE+L K+ + AIHGNKSQ ART AL GFK+GE+R+LVATDVAARGIDI QLP+V+N+ELP+ DYVHRIGRTGRAG+ G A+SL + +A Sbjct: 1 MPFSTLGLSDPLLRAIADAGYTKPSPIQSQAIPAVLEGRDLLAAAQTGTGKTAGFTLPILHRLSQKSYSTNRPI-RVLILTPTRELAAQVGESVTKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVSQNAVKLDKVETLVLDEADRMLDMGFIRDIRKVIALLPKKRQNLLFSATFSDDIRKLTTGLLVNPVKIEVAPRNTAAELVEQIVYTVNKTQKAELLCHLVKENDWRQVLVFTSTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALAGFKAGELRVLVATDVAARGIDIAQLPHVINFELPRSPADYVHRIGRTGRAGEEGQAISLVSHDEYSA 356 The following BLAST results are available for this feature:
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
Pagesback to top
BLAST of atp-dependent rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of atp-dependent rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1_size3401120:989238..990893- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold1_size3401120-processed-gene-10.1 ID=snap_masked-scaffold1_size3401120-processed-gene-10.1|Name=atp-dependent rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=1656bp|location=Sequence derived from alignment at scaffold1_size3401120:989238..990893- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'atp-dependent rna helicase' has the following synonyms
Add to Basket
|