atp-dependent rna helicase, snap_masked-scaffold1_size3401120-processed-gene-10.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000002659 (supercontig:LSalAtl2s:LSalAtl2s153:555306:559625:1 gene:EMLSAG00000002659 transcript:EMLSAT00000002659 description:"maker-LSalAtl2s153-augustus-gene-5.7") HSP 1 Score: 185.652 bits (470), Expect = 4.137e-53 Identity = 115/340 (33.82%), Postives = 188/340 (55.29%), Query Frame = 0 Query: 13 LRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPR----ALVVTPTRELAAQ---VGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAE-GLLINPVSIEVAPRN----TTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGR 339 L ++ G++ + IQAQ IP +L G D++ AA+TG+GKT F +P ++++ K PR ++++PTREL+ Q V L KY T +V GG N + +L +G++++VATPGRLLD L+ ++ L++DEADR+LD+GF ++KK+++L+PKKRQT+LFSAT +K+ L + L P+ I + N T ++Q ++ LL +++ +V+VF ++ E + +IHG + Q RT F + + IL+ TDVAARG+DI + ++V Y+ ++Y+HR+GRT R Sbjct: 131 LNGIQDMGFSQMTEIQAQTIPHLLEGRDLVGAAKTGSGKTLSFLIPAVELIY-----KLKFMPRNGTGVIIISPTRELSMQTFGVLRELLKYH-----CHTYGLVMGGANRNTEAQKLNKGINIVVATPGRLLDHLRNTKDFLYKNLQCLIIDEADRILDVGFEEEMKKIIQLLPKKRQTMLFSATTTKKTEDLVKLALKKEPIYIGIDSANDNGAATVSGLEQGYVICPSEKRLLLLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVQSIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPDVDWIVQYDPTDDPKEYIHRVGRTAR 460
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000005732 (supercontig:LSalAtl2s:LSalAtl2s309:725565:728317:1 gene:EMLSAG00000005732 transcript:EMLSAT00000005732 description:"maker-LSalAtl2s309-augustus-gene-7.79") HSP 1 Score: 180.259 bits (456), Expect = 3.372e-51 Identity = 104/356 (29.21%), Postives = 189/356 (53.09%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHD--------KIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 +F+ +L ++ +GY PSPIQ A+P LAG D L +++GTGKT + +L LS+ N + L++ PTRE+A Q +++ + G LS + + + GG+ + +LK+ + +PGR+ L ++GV++++++++ +LDEAD++ + F D+ +++ +P+ QTL SATF + L NP + + ++Q V + H K L LI + Q +VF A + ++L G+ ++ + G + Q R +L+ K+ RI++ TD++ARGID + +V+N+++P Y+HRIGR GR G G+A+++ Sbjct: 21 TFEHFQFQSPILEGLKVNGYQVPSPIQVSALPYTLAGLDXLVQSKSGTGKTLVY---VLSALSSIDVESNEL--QGLLIAPTREIAVQGAQTMLEIGGHLSKLKASTFI-GGMSVEEDKLKLKK-CHMAFGSPGRVKQLIEEGVMNVSQLKVFILDEADKLCEKSFKEDLSWIMRTLPEIHQTLALSATFPNSLENTLISKLKNPTHVRLGQDCQVLLGVNQFVLESPSHGLVKKVVDYKFESLLKLISNVSFEQCIVFCNYSLRARAICDKLNDRGWPAIFLAGMQEQKDRLNSLKDLKTFRCRIVLTTDLSARGIDARHVNFVINFDVPSQGTTYLHRIGRAGRYGSKGIALTI 369
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000012740 (supercontig:LSalAtl2s:LSalAtl2s967:89676:95604:1 gene:EMLSAG00000012740 transcript:EMLSAT00000012740 description:"augustus_masked-LSalAtl2s967-processed-gene-0.13") HSP 1 Score: 171.785 bits (434), Expect = 2.800e-48 Identity = 116/360 (32.22%), Postives = 192/360 (53.33%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGV-ISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPK---KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQK-VYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMG-FNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVS-LPDGNRV 355 +D G P L + SS Y +P+PIQAQ+IP +L G D+L +A TG+GKTA + LP+L + KN + +++ PTREL+ Q+ + K + P T++ K + Q G +VL++TP L+ L + G + L +E L++DE+D++ + ++ L ++ K + FSAT + ++ + L N VS+ + RN + + Q VY + K L LI +G VL+F A+ L E L K + IH ++S R A++ F++G +L+ T++ +RGID+ + V+NY+ P + Y+HR+GRTGRAG+ G AV+ D ++V Sbjct: 69 WDLSGSLPEGLIEMVSSLYPNPTPIQAQSIPIMLQGRDVLGSAPTGSGKTAAYLLPIL-----VNQEKNKL--KTIILCPTRELSHQIHQEALKL---IPPNYQTKVQVASSKKSNQ------GANVLISTPNTLVYLIKDGSSLDLKSLEWLIVDESDKLFEDKGKASFREQLAVVYKACMSSKKAFFSATLATDVENWCKTNLDNAVSVTIGIRNKACKDVKQSLVYTGSEKGKNYALTNLINDGIKPPVLIFVQDFERADELKEILTKQKKIKAEVIHSHRSLLQREDAIKTFRAGRTWVLICTELMSRGIDVKGVNLVINYDFPPSTVSYIHRVGRTGRAGRPGRAVTFFTDDDKV 412
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000010227 (supercontig:LSalAtl2s:LSalAtl2s679:403636:405959:-1 gene:EMLSAG00000010227 transcript:EMLSAT00000010227 description:"maker-LSalAtl2s679-augustus-gene-3.17") HSP 1 Score: 169.859 bits (429), Expect = 3.143e-47 Identity = 124/381 (32.55%), Postives = 196/381 (51.44%), Query Frame = 0 Query: 21 YTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQIL-STSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSP--AQTTQIVFGGVKINPQIARL-KRGVDVLVATPGRLLDLQQQGVISLAEIE------------ILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPR---NTTAERIDQKVYFAEKHDKIR----LLGGLIEEGEWNQVLVFTTT----KHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAG--LAVSLP------DGNRVAAKPDVDGNSV 366 + +PIQA AIP L D+ A A TG+GKT F +P+L+IL ++S + AL+++PTRELA+Q+ + L+ + S++ + G + + + K G +++ATPGRL D+ S+ +++ IL+LDEADR+L +GF I ++ +PK+R+T LFSAT +K++ L L NPV ++V N + I Y+ + + LL L E + +VF +T ++F+ L L A+HG K R K + FK ++ +LV TDV +RG+D + +VV ++ PK +E +VHRIGRT R+G G L + LP D ++ K D D V Sbjct: 33 FKKMTPIQAXAIPLFLGLKDVCAEAVTGSGKTLAFVIPILEILLNSSNEESKVHDIGALILSPTRELASQISQVLEVFLSKIPSLNSLLIIGGGGSSSVGETLRKFEKEGAKIIIATPGRLEDILTGKTESINQLKAEKMARGFKSTKILILDEADRLLRLGFETAINTIISFLPKQRRTSLFSATQTKDLDELIRAGLRNPVLVKVKEHGKENELSTPIKLTNYYMKCDPPAKKFATLLKFLKTEAAGKKTMVFFSTCACVEYFSTLLERFLKDDNTPVFALHGQKG-GTRFKIFDKFKKLDMGVLVCTDVLSRGVDFPDVEWVVQFDAPKTAEAFVHRIGRTARSGAVGNALLLLLPTEDSYIDFIKINQKVDFDKMEV 412
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Match: EMLSAG00000000991 (supercontig:LSalAtl2s:LSalAtl2s116:1961290:1963414:1 gene:EMLSAG00000000991 transcript:EMLSAT00000000991 description:"maker-LSalAtl2s116-augustus-gene-19.39") HSP 1 Score: 161.384 bits (407), Expect = 4.514e-44 Identity = 122/384 (31.77%), Postives = 194/384 (50.52%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPK------KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTA---------------ERIDQKVYFAEKHDKIRLLGGLIEEGEWN-------QVLVFTTTKH---FANRLTER--LCKMGFN--SMAIHGNKSQNARTKALEGFK---SGEIR---ILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAG 344 FD G+ P +++ ++S G + P+ +Q+ IP +LAG D+L QTG+GK +LPLL L A TP ++ G + + + P ++ GG K + ARL++G+++LV+TPGRLLD + + + L++I LV DEADRMLD+G+ D+ ++ + + KRQT+L SAT ++ IR L+E L +P +++ + + E + Q ++ L I W ++L+F T+ + + L E+ + G N M +HGN Q RTK F+ SG I +L+ TDVAARG+D+ ++ ++V Y P + DYVHRIGRT R G G Sbjct: 95 FDGHGIHPYIIKNLDSMGISRPTAVQSATIPRILAGKDVLVKXQTGSGKXLAXALPLLHSL-------QAITP---------QIHRDSG-----FFARIVPG----VLHGGEKRKSEKARLRKGLNILVSTPGRLLDHIHKTKTLDLSKIHYLVFDEADRMLDLGYERDVNDIINAISENSSEEIKRQTILLSATLTQGIRQLSEVSLKHPDYVDITSTDGNSVMAISDDLQVDTAVPENLQQTFIVVPAKLRLITLSSFIL---WKCGGKSMKKILIFLATQDMVDYHHTLFEQSLYSEEGKNIKFMKLHGNMDQGERTKVFNDFREIDSGVISSGLVLLCTDVAARGLDLPKVDWIVQYNPPISTADYVHRIGRTARIGLKG 450
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|152013500|sp|A5DZE6.1|DED1_LODEL (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 289.656 bits (740), Expect = 2.145e-90 Identity = 164/368 (44.57%), Postives = 227/368 (61.68%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQIL----------STSGKRKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGN 353 SF + LD L+ ++ S +T P+P+Q ++P V AG D++A AQTG+GKT GF P+L ST + P LV+ PTREL +Q+ + +K Y S + P +V+GG I QI +L RG D+LVATPGRL DL ++G +SLA I+ LVLDEADRMLDMGF I+ +++ MP + RQTL+FSATF ++I+ LA L + + + V +T+E I QKV + E +K ++ L+ +VFT TK A+ L + L GF + AIHG++SQ R KAL FKSG+ ILVAT VAARG+DI + +V+NY+LP +DYVHRIGRTGRAG G+A + + N Sbjct: 176 SFTAPPLDELLVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAPIPESTGAFSSHKVYPTILVMAPTRELVSQIYDESKKFAYRSWVRPC----VVYGGADIGNQIRQLDRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDEEKKSVILDLLNANSEGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRN 539
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|158514835|sp|A3LQ01.3|DED1_PICST (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 288.886 bits (738), Expect = 3.034e-90 Identity = 163/368 (44.29%), Postives = 225/368 (61.14%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQ----------ILSTSGKRKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKL--MP--KKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGN 353 SF + LD L+ + S +T P+P+Q ++P V G D++A AQTG+GKT GF P+L ST + P LV+ PTREL +Q+ + +K Y S + PA +V+GG I QI L +G D+LVATPGRL DL ++G +SLA I+ LVLDEADRMLDMGF I+ +++ MP + RQTL+FSATF +I+ LA L + + + V +T+E I QK+ + E +K +L L+ G+ ++FT TK A+ L + L GF + AIHG++SQ R KAL FKSG ILVAT VAARG+DI + +V+NY+LP +DYVHRIGRTGRAG G+A + + N Sbjct: 169 SFTAPPLDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVSQIYDEAKKFAYRSWVKPA----VVYGGADIGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPTDIQMLARDFLKDYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSAGDAGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRN 532
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|74660335|sp|Q6CLR3.1|DED1_KLULA (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 288.115 bits (736), Expect = 4.275e-90 Identity = 163/373 (43.70%), Postives = 229/373 (61.39%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKN----------ATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLK--LMPK--KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPD-GNRVAAK 358 F S LDP LL ++ + +T P+P+Q ++P V AG D++A AQTG+GKT GF P+L +SG P A+++ PTRELA Q+ + +K Y S + P +V+GG I+ QI +++ G ++LVATPGRL DL ++ ISLA ++ LVLDEADRMLDMGF I+++++ MP RQTL+FSATF EI+ LA L + V + V +T+E I QK+ + E DK L L+ L+F TK A+ LT+ L GF + AIHG+++Q R +AL FK+G ILVAT VAARG+DI + +V+N++LP +DYVHRIGRTGRAG G+A + + GN+ AK Sbjct: 161 FHSPPLDPLLLDNIKLARFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESFSSGPASTPEAAGNSYIKKVYPTAVILAPTRELATQIYDEAKKFTYRSWVKP----MVVYGGASIDNQIKQMRYGCNLLVATPGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEGSDMPSVDNRQTLMFSATFPSEIQHLASDFLKDYVFLSVGRVGSTSENITQKILYVEDFDKNDTLLDLLAASNEGLTLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNRGNKNVAK 529
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|118582049|sp|Q0UWA6.1|DED1_PHANO (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 289.656 bits (740), Expect = 4.726e-90 Identity = 164/371 (44.20%), Postives = 231/371 (62.26%), Query Frame = 0 Query: 3 FDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGK------------RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLK--LMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPD-GNR 354 F + LD LL +E SGY P+P+Q +IP V+ G D++A AQTG+GKT GF P+L +G R+ P +L++ PTREL +Q+ + +K Y S + P +V+GG I Q+ +++RG D+LVATPGRL+DL ++G ISLA I+ LVLDEADRMLDMGF I+++++ MP RQTL+FSATF ++I+ LA L + + V +T+E I QK+ + E DK +L ++ L+F TK A+ L++ L GF + +IHG+++Q R KALE F+SG ILVAT VAARG+DI + +VVNY+LP +DYVHRIGRTGRAG G+A + + GNR Sbjct: 203 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPC----VVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKIEYVEDADKRSVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNR 569
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|75535255|sp|Q9Z6C9.1|CSHA_LACRE (RecName: Full=ATP-dependent RNA helicase CshA; AltName: Full=Autoaggregation-mediating protein) HSP 1 Score: 283.878 bits (725), Expect = 4.903e-90 Identity = 146/349 (41.83%), Postives = 217/349 (62.18%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 M F LGL +LL+A++ SGY +PIQ Q IP VL G D++ AQTGTGKTA F LP+++ + T +A++++PTRELA Q E L + G + Q+V+GG I QI LK+ +LV TPGRL D + + L I+ LVLDEAD ML+MGF+ DI+ ++K P RQTLLFSAT EI+ + + +P ++ + + T + +DQ A ++K ++ LI+ + + +VF TK + L++ L G+N+ IHG+ +Q+ R+K + FK+ E+ ILVATDVAARG+DI+ + +V NY++P + YVHRIGRTGRAG G++++ Sbjct: 1 MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENVDTEN-----PNIQAIIISPTRELAIQTQEELYRLGKD--KHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTF 342
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|121789113|sp|Q2HBE7.1|DED1_CHAGB (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 289.271 bits (739), Expect = 5.550e-90 Identity = 161/372 (43.28%), Postives = 234/372 (62.90%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQ-----------ILSTSGKRKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLK--LMPK--KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPD-GNR 354 ++F + LD LL +E + Y P+P+Q +IP V+ G D++A AQTG+GKT GF P++ S G R+ P AL++ PTREL +Q+ E +K Y S + P +V+GG I Q+ +++RG D+LVATPGRL+DL ++G ISL I+ LVLDEADRMLDMGF I+++++ MP +RQTL+FSATF ++I+ LA+ L + V + V +T+E I QKV + E DK +L ++ L+F TK A+ L++ L F + +IHG+++Q R +ALE F++G+ ILVAT VAARG+DI + +V+NY+LP +DYVHRIGRTGRAG G+A + + GNR Sbjct: 198 LTFSNPPLDAHLLSNIELARYQIPTPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFPIMHQSFTQGPSPIPAQSGGGYRQRKAYPTALILAPTRELVSQIYEEARKFAYRSWVRPC----VVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVQGEDMPTTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNR 565
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|67461243|sp|Q5GUR8.2|RHLB_XANOR (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 285.034 bits (728), Expect = 1.639e-89 Identity = 166/407 (40.79%), Postives = 237/407 (58.23%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQIL--STSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLD-LQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKK--RQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVDGNSVNYTADVGNRPAYEPTGNERR---PQRPRRPGQGGQG 399 ++F S L PAL+ +ES+G+T +PIQA +P L G D+ AQTGTGKT F + ++ L + + PRAL++ PTRELA Q+ + K+G++L +V+GGV + Q L++GVDV++ATPGRL+D ++Q V+SL EI VLDEADRM D+GFI DI+ LL+ MP++ RQTLLFSAT S + LA + P + V TA R+ Q++YF +K LL GL+ E + +VF TK F R+ L + G+ + G+ Q R L F+ G++ ILVATDVAARG+ I+ + YV NY+LP +EDYVHRIGRT R G+ G A+S + PD++ A + + EP +E P+ R P +G + Sbjct: 9 VTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL--GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIE-------AYIEQKIPVEPVTSELLTPLPRAARVPVEGEEA 406
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|61223743|sp|P0A4D7.1|CSHA_STRPN (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA >gi|61223744|sp|P0A4D8.1|CSHA_STRR6 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA; AltName: Full=Exported protein 9) HSP 1 Score: 283.493 bits (724), Expect = 1.863e-89 Identity = 150/349 (42.98%), Postives = 212/349 (60.74%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 M F+ L L LL +E +G+ SPIQ Q IP L G D++ AQTGTGKTA F LP L+ + T T +ALV+ PTRELA Q E L ++G S + V+GG I QI LK G ++V TPGRLLDL ++ + L +IE L+LDEAD ML+MGF+ DI+ ++ +P+ RQTLLFSAT I+ + + P +++A + T E +DQ ++ +K + L++ + +VF TK + LT L GF + IHG+ QN R + L FK+G + +LVATDVAARG+DI+ + +V NY++P+ E YVHRIGRTGRAGK+G +++ Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTE-----EATIQALVIAPTRELAVQSQEELFRFGR--SKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITF 342
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|75335836|sp|Q9M2F9.1|RH52_ARATH (RecName: Full=DEAD-box ATP-dependent RNA helicase 52) HSP 1 Score: 286.574 bits (732), Expect = 2.436e-89 Identity = 165/378 (43.65%), Postives = 225/378 (59.52%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPR--------ALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLM----PKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIE-------EGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVS-LPDGNRVAAKP 359 +F + L AL ++ Y P+P+Q AIP + AG D++A AQTG+GKTA F P I+S K ++ PR A++++PTRELA Q+ + +K+ + + +GG +N QI L+RGVD+LVATPGRL DL ++G +SL + L LDEADRMLDMGF I+K+++ M P RQT+LFSATF +EI+ LA L N + + V ++ + I Q+V F DK L L+ +G+ LVF TK A+ L LC GF + IHG++SQ R AL FK+G ILVATDVAARG+DI + +VVN++LP +DYVHRIGRTGRAG +GLA + D N AKP Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFP---IISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQT--GVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKP 519
BLAST of atp-dependent rna helicase vs. SwissProt
Match: gi|353558872|sp|C8V8H4.1|DED1_EMENI (RecName: Full=ATP-dependent RNA helicase ded1) HSP 1 Score: 285.804 bits (730), Expect = 7.191e-89 Identity = 162/381 (42.52%), Postives = 235/381 (61.68%), Query Frame = 0 Query: 2 SFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGK------------RKNATTPRALVVTPTRELAAQVGESLQK--YGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLK--LMPK--KRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIE-EGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPD-GNRVAAKPDVD 362 +F + LD L+ + + Y +P+P+Q +IP V+ G D++A AQTG+GKT GF P+L +G R+ P +L++ PTREL +Q+ + +K Y S + P +V+GG I Q+ +++RG D+LVATPGRL+DL ++G ISL I+ L+LDEADRMLDMGF I+++++ MP RQTL+FSATF ++I+ LA L + V + V +T+E I QKV + E HDK +L ++ G L+F TK A+ L+E L F + AIHG+++Q R +ALE F+SG ILVAT VAARG+DI + +V+NY+LP +DYVHRIGRTGRAG G+A + + GNR + +D Sbjct: 187 TFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPC----VVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLID 563
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1198235011|ref|WP_086900249.1| (ATP-dependent RNA helicase RhlE [Kushneria marisflavi] >gi|1197437593|gb|ART63038.1| ATP-dependent RNA helicase RhlE [Kushneria marisflavi]) HSP 1 Score: 476.863 bits (1226), Expect = 1.410e-163 Identity = 237/355 (66.76%), Postives = 282/355 (79.44%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTS--GKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351 MSF LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS G ++ RAL++TPTRELAAQ+GES++KYG L P + +V+GGVK+NPQIARL+ GVDVLVA PGRLLDL Q + L ++E LVLDEADRMLDMGFIHDIKK+L+L+PKKRQ LLFSATFSKEIR LA LL NPVSI+VAPRNT AE +DQ +Y EK ++ LL LI +W+Q LVFT TKH ANR+T+ L K G + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK DYVHRIGRTGRAG +G AVSL PD Sbjct: 1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSREPQGHKRPV---RALILTPTRELAAQIGESVEKYGVHLKPRLKSDVVYGGVKVNPQIARLRDGVDVLVACPGRLLDLVNQKAVRLDQVETLVLDEADRMLDMGFIHDIKKILRLVPKKRQNLLFSATFSKEIRELAGTLLDNPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1343579608|gb|PPD49857.1| (ATP-dependent RNA helicase RhlE [Methylobacter sp.]) HSP 1 Score: 474.937 bits (1221), Expect = 1.708e-163 Identity = 239/362 (66.02%), Postives = 281/362 (77.62%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAAKPDVD 362 M F +LGL LLRA+ +GYT+PSPIQAQAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS KN R L++TPTRELAAQVGES+ KYG+ L P T+IVFGGVKINPQ+ RL+ GVD+LVATPGRLLDL Q + L ++E L+LDEADRMLDMGFI DI+K++ L PKKRQ LLFSATFS++IR L GLL+NP+ IEVAPRNT AE ++Q Y K K LL LI+ +W QVLVFTTTKH ANRLTE+L +G + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDI LP+VVN+ELPKV EDYVHRIGRTGRAG+ G A+SL + V A V+ Sbjct: 1 MPFTTLGLSDPLLRAIADAGYTTPSPIQAQAIPAVLNGHDVLAAAQTGTGKTAGFTLPILHRLSQKSYDKNRPV-RCLILTPTRELAAQVGESVGKYGAHLHPRLKTEIVFGGVKINPQMMRLRGGVDILVATPGRLLDLLSQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIALCPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQIAYLTNKASKTGLLCHLIKTNDWQQVLVFTTTKHGANRLTEKLNNVGIKAAAIHGNKSQGARTSALAGFKAGEIRVLVATDVAARGIDIALLPHVVNFELPKVPEDYVHRIGRTGRAGEEGQAISLISHDEVNALRQVE 361
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1348907824|ref|WP_104423713.1| (ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum] >gi|1346752325|gb|PPK71841.1| ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum]) HSP 1 Score: 474.937 bits (1221), Expect = 1.946e-163 Identity = 231/349 (66.19%), Postives = 278/349 (79.66%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 M F +LGL LLRA+ +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS N R L++TPTRELAAQ+GES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL Q + L ++E L+LDEADRMLDMGFI DI+K++ L+PKKRQ LLFSATFS++IR L GLL+NP+ IEVAPRNT AE ++Q Y K +K LL LI+E +W QVLVFTTTKH ANRLTE+L K+ + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+ EDYVHRIGRTGRAG+ G A+SL Sbjct: 1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYTNNRPV-RVLILTPTRELAAQIGESVSKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIALLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWRQVLVFTTTKHGANRLTEKLNKINIKAAAIHGNKSQGARTSALAGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1093981390|ref|WP_070979946.1| (ATP-dependent RNA helicase RhlE [Kushneria sp. YCWA18] >gi|1092294756|gb|OHV08775.1| ATP-dependent RNA helicase RhlE [Kushneria sp. YCWA18]) HSP 1 Score: 476.093 bits (1224), Expect = 2.264e-163 Identity = 257/428 (60.05%), Postives = 304/428 (71.03%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILS---TSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PDG-------NRVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRP-----QRPRRPGQGGQGGGQRGPGGQGRN 411 MSF LGL P LLRAVE++GY +PSPIQA+AIPA L G D+LAAAQTGTGKTAGF+LP+LQ LS +G+R RAL++TPTRELAAQV ES++KYG+ LSP + +V+GGVKINPQI RL+ GVD+LVA PGRLLDL Q + L ++E LVLDEADRMLDMGFIHDI+K+LKL+P++RQTLLFSATFS EIR LA+ LL PVSI+VAPRNT AE +DQ VY +K K LL LI + + Q LVFT TKH ANR+T+ L K G + AIHGNKSQNART AL GFKSGE+RILVATDVAARGIDI LP+V+N+ELP V DYVHRIGRTGRAG +G A+SL PD R+ KP S N+ A G P +R RP G + RG GG+ RN Sbjct: 1 MSFSELGLAPELLRAVEAAGYHTPSPIQAKAIPACLEGRDVLAAAQTGTGKTAGFTLPILQRLSRQPVTGRR----AVRALILTPTRELAAQVHESVEKYGAALSPRLESDVVYGGVKINPQINRLREGVDILVACPGRLLDLVSQKAVRLDQVETLVLDEADRMLDMGFIHDIRKILKLVPQQRQTLLFSATFSSEIRQLADKLLDQPVSIDVAPRNTAAETVDQSVYKIDKPSKTALLVHLIRQQQLEQALVFTATKHMANRVTKNLQKAGITAAAIHGNKSQNARTSALNGFKSGEVRILVATDVAARGIDIAHLPHVINFELPNVPADYVHRIGRTGRAGASGSAMSLVAPDERDQLKGIERLIGKPVPVHESKNFDARAVQEELSSAGGQTEDPGPPGQRRNARPAGGQRQQRSRGQGGRERN 424
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1197586166|ref|WP_086621375.1| (ATP-dependent RNA helicase RhlE [Kushneria konosiri] >gi|1196021791|gb|ARS52618.1| ATP-dependent RNA helicase RhlE [Kushneria konosiri]) HSP 1 Score: 475.322 bits (1222), Expect = 5.707e-163 Identity = 237/354 (66.95%), Postives = 282/354 (79.66%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351 MSF LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS K + P RAL++TPTRELAAQ+GES++KYG L P + +V+GGVK+NPQIARL+ GVDVLVA PGRLLDL Q + L ++E LVLDEADRMLDMGFIHDIKK+L+L+PK+RQ LLFSATFSKEIR LA LL NPVSI+VAPRNT AE +DQ +Y EK ++ LL LI +W+Q LVFT TKH ANR+T+ L K G + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK DYVHRIGRTGRAG +G AVSL PD Sbjct: 1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSR--KPQGHKRPVRALILTPTRELAAQIGESVEKYGVHLKPRLKSDVVYGGVKVNPQIARLRDGVDVLVACPGRLLDLVNQKAVRLDQVETLVLDEADRMLDMGFIHDIKKILRLVPKQRQNLLFSATFSKEIRELAGTLLNNPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1222075770|ref|WP_090132494.1| (ATP-dependent RNA helicase RhlE [Kushneria avicenniae] >gi|1097387640|emb|SFC47209.1| ATP-dependent RNA helicase RhlE [Kushneria avicenniae]) HSP 1 Score: 473.781 bits (1218), Expect = 2.043e-162 Identity = 238/356 (66.85%), Postives = 282/356 (79.21%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILST---SGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL--PD 351 MSF LGL P LLRA+E +GY +PSPIQ++AIPA L G D+LAAAQTGTGKTAGF+LP+L+ LS SGKR RAL++TPTRELAAQ+GES++KYG LSP + +V+GGVK+NPQI RL+ GVD+LVA PGRLLDL Q + L E+E LVLDEADRMLDMGFIHDIKK+L+L+P KRQ LLFSATFSKEIR LA LL +PVSI+VAPRNT AE +DQ +Y EK ++ LL LI +W+Q LVFT TKH ANR+T+ L K G + AIHGNKSQNART AL GFKSGE++++VATDVAARGIDI++LP VVN+ELPK DYVHRIGRTGRAG +G AVSL PD Sbjct: 1 MSFSQLGLSPELLRALEDAGYQTPSPIQSKAIPACLEGRDVLAAAQTGTGKTAGFTLPILERLSRQPRSGKRPV----RALILTPTRELAAQIGESVEKYGVHLSPRLKSDVVYGGVKVNPQITRLRDGVDILVACPGRLLDLVGQKAVRLDEVETLVLDEADRMLDMGFIHDIKKILRLVPGKRQNLLFSATFSKEIRELAGTLLNDPVSIDVAPRNTAAESVDQSIYMVEKPQRMALLTHLITHHQWSQALVFTATKHMANRVTQHLQKAGITAAAIHGNKSQNARTAALSGFKSGEVQVMVATDVAARGIDISELPNVVNFELPKTPADYVHRIGRTGRAGASGQAVSLVMPD 352
BLAST of atp-dependent rna helicase vs. nr
Match: gi|652888017|ref|WP_027148013.1| (ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum]) HSP 1 Score: 472.241 bits (1214), Expect = 2.346e-162 Identity = 230/349 (65.90%), Postives = 277/349 (79.37%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 M F +LGL LLRA+ +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS N R L++TPTRELAAQ+GES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL Q + L ++E L+LDEADRMLDMGFI DI+K++ +PKKRQ LLFSATFS++IR L GLL+NP+ IEVAPRNT AE ++Q Y K +K LL LI+E +W QVLVFTTTKH ANRLTE+L K+ + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+ EDYVHRIGRTGRAG+ G A+SL Sbjct: 1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYGNNRPV-RVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348
BLAST of atp-dependent rna helicase vs. nr
Match: gi|493946465|ref|WP_006890407.1| (RNA helicase [Methylobacter tundripaludum] >gi|344262165|gb|EGW22436.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] >gi|1346757703|gb|PPK77119.1| ATP-dependent RNA helicase RhlE [Methylobacter tundripaludum]) HSP 1 Score: 472.241 bits (1214), Expect = 2.734e-162 Identity = 230/349 (65.90%), Postives = 277/349 (79.37%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 M F +LGL LLRA+ +GYT+PSPIQ+QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS N R L++TPTRELAAQ+GES+ KYG+ L P +++VFGGVKINPQ+ RL+ GVD+LVATPGRLLDL Q + L ++E L+LDEADRMLDMGFI DI+K++ +PKKRQ LLFSATFS++IR L GLL+NP+ IEVAPRNT AE ++Q Y K +K LL LI+E +W QVLVFTTTKH ANRLTE+L K+ + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVN+ELP+ EDYVHRIGRTGRAG+ G A+SL Sbjct: 1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYGNNRPV-RVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISL 348
BLAST of atp-dependent rna helicase vs. nr
Match: gi|647287549|ref|WP_025732497.1| (hypothetical protein [Carnimonas nigrificans]) HSP 1 Score: 473.396 bits (1217), Expect = 5.568e-162 Identity = 238/349 (68.19%), Postives = 279/349 (79.94%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSL 349 MSF SLGL PAL RAV+ +GYT+PSPIQA+AIP L G D+LAAAQTGTGKTAGF+LP+LQ L+ + +R+ +PRAL++TPTRELAAQ+ ESL Y LSP + +VFGGVKINPQI RL+RGVDVLVA PGRLLDL Q +SL IE LVLDEADRMLDMGF+HDIK++LKL+P KRQ LLFSATFS EIRTL E +L NPVSI+VAPRN+ AE ++Q VY +K K LL LI++ QVLVFT TKH ANR+T+RL + G ++ AIHGNKSQNART+AL GFKSG I +LVATDVAARGIDI QLP V+N+ELPK + DYVHRIGRTGRAG G AVSL Sbjct: 1 MSFASLGLLPALKRAVDDAGYTTPSPIQAKAIPVALEGRDVLAAAQTGTGKTAGFALPILQRLALTPERQ-GKSPRALILTPTRELAAQIHESLVAYSEHLSPRLRSDVVFGGVKINPQIERLQRGVDVLVACPGRLLDLVSQKAVSLNHIETLVLDEADRMLDMGFVHDIKRILKLLPAKRQNLLFSATFSAEIRTLTESILHNPVSIDVAPRNSAAETVEQAVYKIDKPLKSALLIHLIKQQSLTQVLVFTATKHMANRVTQRLERAGISAAAIHGNKSQNARTQALAGFKSGTINVLVATDVAARGIDIAQLPNVINFELPKAAPDYVHRIGRTGRAGAEGKAVSL 348
BLAST of atp-dependent rna helicase vs. nr
Match: gi|1191468117|gb|OTE97297.1| (ATP-dependent RNA helicase RhlE [Crenothrix sp. D3]) HSP 1 Score: 469.544 bits (1207), Expect = 3.086e-161 Identity = 235/358 (65.64%), Postives = 278/358 (77.65%), Query Frame = 0 Query: 1 MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTGKTAGFSLPLLQILSTSGKRKNATTP-RALVVTPTRELAAQVGESLQKYGSELSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAEIEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAEGLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVLVFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRILVATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLPDGNRVAA 357 M F LGL LLRA+ +GYT+PSPIQ QAIPAVL G+D+LAAAQTGTGKTAGF+LP+L LS K ++ P R L++TPTRELAAQVGES+ KYG L P T++VFGGVKINPQ+ RL+ GVDVLVATPGRLLDL Q + L ++E LVLDEADRMLDMGFI DI+K++ +PKKRQ LLFSATFS++IR L GLL+NP+ IEVA RNT AE ++Q Y K +K LL LI+ +W QVLVFT+TKH ANRLT++L K+ + AIHGNKSQ ART AL GFK+GEIR+LVATDVAARGIDIN LP+VVNYELP+ DYVHRIGRTGRAG+ G AVSL + VAA Sbjct: 1 MPFTKLGLSDPLLRAIAEAGYTTPSPIQLQAIPAVLNGHDLLAAAQTGTGKTAGFALPILHRLSQ--KHYSSNRPIRVLILTPTRELAAQVGESVSKYGEHLHPRLKTEVVFGGVKINPQMMRLRGGVDVLVATPGRLLDLVNQNAVKLDQVETLVLDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFSEDIRQLTTGLLVNPIKIEVAARNTAAETVEQIAYLCNKANKAELLCHLIKTNDWQQVLVFTSTKHGANRLTDKLNKLDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGIDINLLPHVVNYELPRAPADYVHRIGRTGRAGEEGQAVSLVSHDEVAA 356 The following BLAST results are available for this feature:
BLAST of atp-dependent rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of atp-dependent rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of atp-dependent rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1_size3401120:989238..990893- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold1_size3401120-processed-gene-10.1 ID=snap_masked-scaffold1_size3401120-processed-gene-10.1|Name=atp-dependent rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=1656bp|location=Sequence derived from alignment at scaffold1_size3401120:989238..990893- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'atp-dependent rna helicase' has the following synonyms
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