3-hydroxyacyl- dehydrogenase domain protein, snap_masked-scaffold1_size3401120-processed-gene-17.12 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. SwissProt
Match: gi|391359370|sp|Q7D3B2.2|LCDH_AGRFC (RecName: Full=L-carnitine dehydrogenase; Short=CDH; Short=L-CDH) HSP 1 Score: 57.3806 bits (137), Expect = 2.149e-9 Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = 0 Query: 1 MTAVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDL-NAPAGLADYAKRYGP 83 + +V P+ + +EI I +RL A+ EA+ L + G A+ ++ID + G GLRW+ MG FET + AG+ + ++GP Sbjct: 161 LVSVGMKPVQIGREIDAHIGDRLLEAIWREALWLVKDGIATTQEIDDIIRYGFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGP 244
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. SwissProt
Match: gi|81843127|sp|Q8CQB9.1|LCDH_STAES (RecName: Full=L-carnitine dehydrogenase; Short=CDH; Short=L-CDH) HSP 1 Score: 55.8398 bits (133), Expect = 6.742e-9 Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 0 Query: 9 ITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDL-NAPAGLADYAKRYGP 83 + V+ EI G I +RL AL E++ + G A+ E++DKA GLR++ GPF T L G+ K++GP Sbjct: 173 LHVRHEIEGHIADRLMEALWRESLHIVNDGIATTEEVDKAFTHAAGLRYAQYGPFMTFHLAGGEGGMRHMLKQFGP 248
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. SwissProt
Match: gi|311033442|sp|Q16836.3|HCDH_HUMAN (RecName: Full=Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial; Short=HCDH; AltName: Full=Medium and short-chain L-3-hydroxyacyl-coenzyme A dehydrogenase; AltName: Full=Short-chain 3-hydroxyacyl-CoA dehydrogenase; Flags: Precursor) HSP 1 Score: 51.2174 bits (121), Expect = 2.959e-7 Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 0 Query: 3 AVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETID 67 A+ + P++ K+ PGFI+NRL L EA+RL + G AS EDID A+ G G MGPFE +D Sbjct: 203 ALGKHPVSC-KDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFELLD 263
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. SwissProt
Match: gi|391359296|sp|D7UNT2.1|LCDH_RHISP (RecName: Full=L-carnitine dehydrogenase; Short=CDH; Short=L-CDH) HSP 1 Score: 51.2174 bits (121), Expect = 3.078e-7 Identity = 34/127 (26.77%), Postives = 57/127 (44.88%), Query Frame = 0 Query: 9 ITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDL-NAPAGLADYAKRYGPMYQDMAASQATAPDWDETAVAALDASRRVTLDRDTIAQRQNWRDDRLAALI 134 + + KEI F+ +RL AL EA+ L Q E +D + G+RW+ MG FET + AG+ + ++GP + D D+ V + A +I + + RD+ L ++ Sbjct: 177 VVIAKEIEAFVGDRLLEALWREALWLIQDDICHTETLDNVMRYSFGMRWAQMGLFETYRIAGGEAGMRHFLAQFGPCLKWPWTKFTDVVDLDDALVEKIGAQSDAQAAGRSIRELERIRDENLVGIM 303
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. SwissProt
Match: gi|7387725|sp|Q9WVK7.1|HCDH_RAT (RecName: Full=Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial; Short=HCDH; AltName: Full=Medium and short-chain L-3-hydroxyacyl-coenzyme A dehydrogenase; AltName: Full=Short-chain 3-hydroxyacyl-CoA dehydrogenase; Flags: Precursor) HSP 1 Score: 50.447 bits (119), Expect = 5.442e-7 Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 0 Query: 13 KEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETID 67 K+ PGFI+NRL L EA+RL + G AS EDID A+ G G MGPFE +D Sbjct: 212 KDTPGFIVNRLLVPYLIEAIRLHERGDASKEDIDTAMKLGAGYP---MGPFELLD 263
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. nr
Match: gi|1067244101|gb|OED37089.1| (3-hydroxyacyl-CoA dehydrogenase [Chromatiales bacterium (ex Bugula neritina AB1)]) HSP 1 Score: 228.409 bits (581), Expect = 2.506e-72 Identity = 107/142 (75.35%), Postives = 119/142 (83.80%), Query Frame = 0 Query: 1 MTAVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDLNAPAGLADYAKRYGPMYQDMAASQATAPDWDETAVAALDASRRVTLDRDTIAQRQNWRDDRLAALIAHKSKQEN 142 M++V QTPITV+KEI GFILNRLQGALLNE +RL QGGY S EDIDKAVCDGLGLRWSFMGP ETIDLNAP GLADYA RYG MY MA +Q++ PDW E++VA L +RR LD IA+RQNWRD+RLAALIAHKSKQEN Sbjct: 180 MSSVGQTPITVEKEISGFILNRLQGALLNEVLRLTQGGYVSAEDIDKAVCDGLGLRWSFMGPLETIDLNAPEGLADYAARYGAMYHAMAETQSSPPDWHESSVAELHDARRERLDSRDIARRQNWRDNRLAALIAHKSKQEN 321
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. nr
Match: gi|40063653|gb|AAR38442.1| (3-hydroxyacyl-CoA dehydrogenase domain protein [uncultured marine bacterium 582]) HSP 1 Score: 218.009 bits (554), Expect = 3.568e-68 Identity = 104/141 (73.76%), Postives = 114/141 (80.85%), Query Frame = 0 Query: 1 MTAVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDLNAPAGLADYAKRYGPMYQDMAASQATAPDWDETAVAALDASRRVTLDRDTIAQRQNWRDDRLAALIAHKSKQE 141 MT V QTP+TVQKEIPGF+LNRLQGALLNEA+RLAQGG+A+VEDIDK V DGLGLRWSFMGPFETIDLNAP GLADYAKRYGPMY+DMA QA DW E A+ L +RR L D +A R WRD RLAAL AHK K+E Sbjct: 181 MTGVGQTPVTVQKEIPGFLLNRLQGALLNEALRLAQGGFATVEDIDKTVRDGLGLRWSFMGPFETIDLNAPGGLADYAKRYGPMYRDMAQDQAAPADWAEEAMTPLHDARRAELSIDAVASRHFWRDSRLAALAAHKQKRE 321
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. nr
Match: gi|739474102|ref|WP_037334002.1| (3-hydroxyacyl-CoA dehydrogenase [Salinisphaera hydrothermalis] >gi|666936141|gb|KEZ78574.1| 3-hydroxyacyl-CoA dehydrogenase [Salinisphaera hydrothermalis C41B8]) HSP 1 Score: 193.356 bits (490), Expect = 1.140e-58 Identity = 91/142 (64.08%), Postives = 104/142 (73.24%), Query Frame = 0 Query: 1 MTAVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDLNAPAGLADYAKRYGPMYQDMAASQATAPDWDETAVAALDASRRVTLDRDTIAQRQNWRDDRLAALIAHKSKQEN 142 + A Q PITV +EI GF+LNRLQGALLNEAMRL GGY S ED+D V GLGLRWSFMGP ETIDLNAP G+ADYA RYGP+Y MA SQ+ APDW A+A L+ +RRV L +A+RQ WRD RL AL AHK +N Sbjct: 168 LEAAGQVPITVHREISGFVLNRLQGALLNEAMRLVGGGYVSAEDLDNTVRHGLGLRWSFMGPLETIDLNAPGGIADYAARYGPLYAGMAESQSAAPDWSAPAIAELERARRVLLPEAKLAERQAWRDRRLMALAAHKRDMDN 309
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. nr
Match: gi|764604072|ref|WP_044427460.1| (3-hydroxyacyl-CoA dehydrogenase [Skermanella aerolata] >gi|763835853|gb|KJB96302.1| 3-hydroxyacyl-CoA dehydrogenase [Skermanella aerolata KACC 11604]) HSP 1 Score: 185.267 bits (469), Expect = 1.831e-55 Identity = 85/139 (61.15%), Postives = 101/139 (72.66%), Query Frame = 0 Query: 1 MTAVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDLNAPAGLADYAKRYGPMYQDMAASQATAPDWDETAVAALDASRRVTLDRDTIAQRQNWRDDRLAALIAHKSK 139 MTA+ Q PI +EIPGF+LNRLQGALLNEA +L Q G SVED+DK + +GLGLRWSFMGPFETIDLNAP G+ DY +RYGPMY +M SQA +WDE ++ RR+ L D + RQ WRD RL AL AHKS+ Sbjct: 170 MTALGQEPIRTTREIPGFVLNRLQGALLNEAFKLVQDGIVSVEDVDKTIREGLGLRWSFMGPFETIDLNAPGGVVDYIQRYGPMYYEMGQSQAQPREWDEAVATRIERQRRMMLSEDRLQARQAWRDRRLMALAAHKSQ 308
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. nr
Match: gi|1221665001|ref|WP_089793386.1| (3-hydroxyacyl-CoA dehydrogenase [Halomonas korlensis] >gi|1097672225|emb|SFU45389.1| 3-hydroxyacyl-CoA dehydrogenase [Halomonas korlensis]) HSP 1 Score: 184.882 bits (468), Expect = 2.398e-55 Identity = 87/137 (63.50%), Postives = 108/137 (78.83%), Query Frame = 0 Query: 1 MTAVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDLNAPAGLADYAKRYGPMYQDMAASQATAPDWDETAVAALDASRRVTLDRDTIAQRQNWRDDRLAALIAHK 137 MTAV+Q PI V++E+ GFILNRLQGALLNEA+RL + GY S ED+DK V GLGLRWSFMGP ETIDLNAPAG+ DYA+RYGP+Y+D+ A + + W+E +AALDA RR L + +A+RQ WRD RL AL+AH+ Sbjct: 169 MTAVRQQPILVKREVQGFILNRLQGALLNEALRLFRDGYVSAEDLDKTVKYGLGLRWSFMGPLETIDLNAPAGVVDYARRYGPLYRDVDAQRDGSDPWEEQTLAALDAERRAILPSEGLAERQAWRDRRLMALMAHQ 305
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. nr
Match: gi|566133582|ref|WP_024004198.1| (3-hydroxyacyl-CoA dehydrogenase [Advenella kashmirensis] >gi|565409218|gb|ETF03554.1| 3-hydroxyacyl-CoA dehydrogenase [Advenella kashmirensis W13003]) HSP 1 Score: 182.185 bits (461), Expect = 3.563e-54 Identity = 85/137 (62.04%), Postives = 101/137 (73.72%), Query Frame = 0 Query: 1 MTAVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDLNAPAGLADYAKRYGPMYQDMAASQATAPDWDETAVAALDASRRVTLDRDTIAQRQNWRDDRLAALIAHK 137 M AVKQ P+TV KEI GFILNRLQGALL EA RL + GY SVED+D V DGLGLRWSFMGPFETIDLNAPAG++DYA RYGP+YQ++A +Q W + + + +RR L +A R++WRD RL AL AHK Sbjct: 174 MNAVKQKPVTVMKEINGFILNRLQGALLREAFRLVEQGYVSVEDLDTTVSDGLGLRWSFMGPFETIDLNAPAGISDYASRYGPLYQELAKTQVDTAPWPKALIDDITQARRAALPASDLATRRSWRDQRLMALAAHK 310
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. nr
Match: gi|1054685710|ref|WP_066451808.1| (3-hydroxyacyl-CoA dehydrogenase [Halomonas chromatireducens] >gi|985015311|gb|AMD02419.1| L-carnitine dehydrogenase [Halomonas chromatireducens]) HSP 1 Score: 181.8 bits (460), Expect = 3.931e-54 Identity = 86/142 (60.56%), Postives = 103/142 (72.54%), Query Frame = 0 Query: 1 MTAVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDLNAPAGLADYAKRYGPMYQDMAASQATAPDWDETAVAALDASRRVTLDRDTIAQRQNWRDDRLAALIAHKSKQEN 142 M AV Q+PI V++E+ GFILNRLQGALLNEA+RL + GY S EDIDK V GLGLRWSFMGPFETIDLNAPAG+ DYA RYGP+Y+D+ + W E + ALD RR L + +RQ WRD RL ALIAH++ Q+ Sbjct: 169 MEAVNQSPILVRQEVQGFILNRLQGALLNEALRLFRDGYVSAEDIDKTVKHGLGLRWSFMGPFETIDLNAPAGVVDYAARYGPLYRDVDIQRGNDNPWAEETLEALDRERRAALPVSELGERQAWRDRRLMALIAHRNTQQT 310
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. nr
Match: gi|739602466|ref|WP_037459914.1| (3-hydroxyacyl-CoA dehydrogenase [Skermanella stibiiresistens] >gi|587637813|gb|EWY36854.1| 3-hydroxyacyl-CoA dehydrogenase [Skermanella stibiiresistens SB22]) HSP 1 Score: 180.644 bits (457), Expect = 1.294e-53 Identity = 83/139 (59.71%), Postives = 100/139 (71.94%), Query Frame = 0 Query: 1 MTAVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDLNAPAGLADYAKRYGPMYQDMAASQATAPDWDETAVAALDASRRVTLDRDTIAQRQNWRDDRLAALIAHKSK 139 MTA+ Q PI +E+PGF+LNRLQGALLNEA +L Q G +VED+DK + +GLGLRWSFMGPFETIDLNAP G+ DY RYGPMY +MA SQA WD ++ RRV L D + RQ+WRD RL AL AHK++ Sbjct: 170 MTALGQEPIRTTREVPGFVLNRLQGALLNEAFKLVQDGVVTVEDVDKTIREGLGLRWSFMGPFETIDLNAPGGIVDYITRYGPMYYEMAQSQAEPRAWDGNVADRIERQRRVLLSEDRLQARQDWRDRRLMALAAHKTQ 308
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. nr
Match: gi|575433776|gb|AHG66082.1| (3-hydroxyacyl-CoA dehydrogenase [Advenella mimigardefordensis DPN7]) HSP 1 Score: 179.874 bits (455), Expect = 2.801e-53 Identity = 85/142 (59.86%), Postives = 101/142 (71.13%), Query Frame = 0 Query: 1 MTAVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDLNAPAGLADYAKRYGPMYQDMAASQATAPDWDETAVAALDASRRVTLDRDTIAQRQNWRDDRLAALIAHKSKQEN 142 M AVKQ P+TV +EI GFILNRLQGALL EA RL + GY SVED+D V GLGLRWSFMGPFETIDLNAP G+ DYA+RYGP+YQ++A +Q W + + +RR L D +A R+ WRD RL AL AHK +Q N Sbjct: 173 MEAVKQKPVTVLQEIDGFILNRLQGALLREAFRLVEQGYVSVEDLDTTVSHGLGLRWSFMGPFETIDLNAPGGIRDYAQRYGPLYQELAKTQVDTEPWSNALIDRVTTARRADLPEDKLAARRAWRDQRLMALAAHKLQQLN 314
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. nr
Match: gi|1197264087|ref|WP_086508839.1| (3-hydroxyacyl-CoA dehydrogenase [Halomonas desiderata] >gi|1194966749|gb|OUE44834.1| 3-hydroxyacyl-CoA dehydrogenase [Halomonas desiderata SP1]) HSP 1 Score: 178.718 bits (452), Expect = 4.856e-53 Identity = 83/137 (60.58%), Postives = 105/137 (76.64%), Query Frame = 0 Query: 1 MTAVKQTPITVQKEIPGFILNRLQGALLNEAMRLAQGGYASVEDIDKAVCDGLGLRWSFMGPFETIDLNAPAGLADYAKRYGPMYQDMAASQATAPDWDETAVAALDASRRVTLDRDTIAQRQNWRDDRLAALIAHK 137 M+ V Q P+ V++E+PGF+LNRLQGALLNEA+RL + GY S ED+DK V GLGLRWSFMGPFETIDLNAPAG+ DYA+RYGP+Y D+ A + A W E +AAL+A RR L + +A+RQ WRD +L AL A++ Sbjct: 169 MSEVGQVPVLVRRELPGFVLNRLQGALLNEALRLFRDGYVSAEDLDKTVKHGLGLRWSFMGPFETIDLNAPAGVTDYARRYGPLYADVDAQRDGASPWQEETLAALEAERRSALPLEGLAERQAWRDRQLMALGAYR 305 The following BLAST results are available for this feature:
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 0
BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of 3-hydroxyacyl- dehydrogenase domain protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1_size3401120:1744492..1744920+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold1_size3401120-processed-gene-17.12 ID=snap_masked-scaffold1_size3401120-processed-gene-17.12|Name=3-hydroxyacyl- dehydrogenase domain protein|organism=Tigriopus kingsejongensis|type=gene|length=429bp|location=Sequence derived from alignment at scaffold1_size3401120:1744492..1744920+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '3-hydroxyacyl- dehydrogenase domain protein' has the following synonyms
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