serine-arginine protein 55, snap_masked-scaffold211_size255937-processed-gene-0.6 (gene) Tigriopus kingsejongensis

Overview
Nameserine-arginine protein 55
Unique Namesnap_masked-scaffold211_size255937-processed-gene-0.6
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of serine-arginine protein 55 vs. L. salmonis genes
Match: EMLSAG00000007146 (supercontig:LSalAtl2s:LSalAtl2s402:743406:749121:1 gene:EMLSAG00000007146 transcript:EMLSAT00000007146 description:"maker-LSalAtl2s402-augustus-gene-7.14")

HSP 1 Score: 97.4413 bits (241), Expect = 2.205e-26
Identity = 42/64 (65.62%), Postives = 57/64 (89.06%), Query Frame = 0 
Query:    5 STRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            STRVY+GGLS+R RERD+EK  +K+G++RE+SLKNGY FVEF+DYRDA+DA Y+ NG++ +G+R
Sbjct:   14 STRVYMGGLSHRVRERDVEKLIRKYGKVREVSLKNGYGFVEFDDYRDADDACYDLNGKEFMGER 77
[Close]
BLAST of serine-arginine protein 55 vs. L. salmonis genes
Match: EMLSAG00000002605 (supercontig:LSalAtl2s:LSalAtl2s151:61867:66000:1 gene:EMLSAG00000002605 transcript:EMLSAT00000002605 description:"maker-LSalAtl2s151-augustus-gene-0.11")

HSP 1 Score: 85.8853 bits (211), Expect = 5.904e-23
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 0 
Query:    1 MSEPSTRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            M     R+YLG +S   RERD+EKFFK +G+LRE++LKNGY FVEFED+RDA+DAV + +G+D+ G R
Sbjct:    1 MPGNHHRLYLGNISDDTRERDVEKFFKGYGKLREVALKNGYGFVEFEDHRDADDAVQDLDGKDMNGSR 68
[Close]
BLAST of serine-arginine protein 55 vs. L. salmonis genes
Match: EMLSAG00000005475 (supercontig:LSalAtl2s:LSalAtl2s294:4530:9586:-1 gene:EMLSAG00000005475 transcript:EMLSAT00000005475 description:"maker-LSalAtl2s294-augustus-gene-0.9")

HSP 1 Score: 72.4034 bits (176), Expect = 2.645e-17
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 0 
Query:    7 RVYLGGLSYRARERDIEKFFKKFGRLREISLKNG-YCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            RV+LG L Y  RERDIE+FF+++GR+  I +K+G Y F EF+DYRDA+DAVY+ NG +L  +R
Sbjct:   41 RVFLGNLPYSVRERDIERFFERYGRVYNIFIKSGKYGFCEFDDYRDADDAVYKLNGCELNSER 103
[Close]
BLAST of serine-arginine protein 55 vs. L. salmonis genes
Match: EMLSAG00000008203 (supercontig:LSalAtl2s:LSalAtl2s495:117181:128694:1 gene:EMLSAG00000008203 transcript:EMLSAT00000008203 description:"augustus_masked-LSalAtl2s495-processed-gene-1.3")

HSP 1 Score: 59.6918 bits (143), Expect = 4.847e-13
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0 
Query:    6 TRVYLGGLSYRARERDIEKFFKKFGRLREISLKN----GYCFVEFEDYRDAEDAVYECNGQDLLG 66
            TR+Y+G L    R +DIE  F K+G++  I LKN     + FVEFED+RDA+DAVY  +G D  G
Sbjct:    5 TRIYVGNLPPDIRTKDIEDLFYKYGKIVFIDLKNRRGPPFAFVEFEDHRDADDAVYARDGYDYDG 69
[Close]
BLAST of serine-arginine protein 55 vs. L. salmonis genes
Match: EMLSAG00000005276 (supercontig:LSalAtl2s:LSalAtl2s2821:6099:8923:1 gene:EMLSAG00000005276 transcript:EMLSAT00000005276 description:"maker-LSalAtl2s2821-augustus-gene-0.8")

HSP 1 Score: 50.0618 bits (118), Expect = 1.025e-9
Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 0 
Query:    7 RVYLGGLSYRARERDIEKFFKKFGRLREISL---KNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            +VY+G L   A + ++E  F+++G++R + +     G+ FVEFED RDAEDA    +G  + G R
Sbjct:   13 KVYVGNLGDNASKHELEDVFRRYGKVRSVWVARNPPGFAFVEFEDERDAEDASKALDGSRICGVR 77
[Close]
BLAST of serine-arginine protein 55 vs. L. salmonis genes
Match: EMLSAG00000007190 (supercontig:LSalAtl2s:LSalAtl2s404:347783:355385:1 gene:EMLSAG00000007190 transcript:EMLSAT00000007190 description:"maker-LSalAtl2s404-augustus-gene-3.38")

HSP 1 Score: 51.2174 bits (121), Expect = 1.104e-9
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 0 
Query:    5 STRVYLGGLSYRARERDIEKFFKKFGRLREISL---KNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            S +VY+G L   A + ++E  F K+G L+ + +     G+ FVEFED RDAED+V   +G  + G R
Sbjct:   10 SCKVYIGNLGNSASKYELEDAFSKYGPLKNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGXRVCGQR 76
[Close]
BLAST of serine-arginine protein 55 vs. L. salmonis genes
Match: EMLSAG00000011164 (supercontig:LSalAtl2s:LSalAtl2s75:177881:179657:-1 gene:EMLSAG00000011164 transcript:EMLSAT00000011164 description:"maker-LSalAtl2s75-snap-gene-1.5")

HSP 1 Score: 49.6766 bits (117), Expect = 3.136e-9
Identity = 20/61 (32.79%), Postives = 40/61 (65.57%), Query Frame = 0 
Query:    4 PSTRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDL 64
            P++R+++G L     E DI+  FK++GR+ EI ++  + FV+F+    A++A+ + NG+ +
Sbjct:   12 PNSRIFIGNLDPSVYEEDIKSTFKRYGRIGEIVMRKSFAFVQFDSPDQAQNAIAKENGESI 72
[Close]
BLAST of serine-arginine protein 55 vs. L. salmonis genes
Match: EMLSAG00000005000 (supercontig:LSalAtl2s:LSalAtl2s260:351904:356465:1 gene:EMLSAG00000005000 transcript:EMLSAT00000005000 description:"maker-LSalAtl2s260-snap-gene-3.59")

HSP 1 Score: 45.8246 bits (107), Expect = 9.024e-8
Identity = 21/61 (34.43%), Postives = 34/61 (55.74%), Query Frame = 0 
Query:    8 VYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            VY+G +  R + RD+   F  +G + E+++ + + FV F    DAE A+ + NG  L G R
Sbjct:   46 VYVGHIDSRVKIRDLRDIFHSYGPVLEVTIVSTHGFVNFSSRSDAESAIRDLNGYSLRGRR 106
[Close]
BLAST of serine-arginine protein 55 vs. L. salmonis genes
Match: EMLSAG00000008457 (supercontig:LSalAtl2s:LSalAtl2s519:272141:277801:-1 gene:EMLSAG00000008457 transcript:EMLSAT00000008457 description:"maker-LSalAtl2s519-augustus-gene-1.19")

HSP 1 Score: 45.0542 bits (105), Expect = 1.748e-7
Identity = 25/71 (35.21%), Postives = 37/71 (52.11%), Query Frame = 0 
Query:    1 MSEPSTRVYLGGLSYRARERDIEKFFKKFGRLREISLKNG---YCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            + E   R+++  L   A +RD+EK F KFG L+EI +      + FV F    DAED     +G ++ G R
Sbjct:  154 IDEDGYRIHVADLDVSATKRDMEKVFGKFGPLKEIWMARSVPCFAFVVFRYREDAEDGXRSADGVEISGRR 224
[Close]
BLAST of serine-arginine protein 55 vs. L. salmonis genes
Match: EMLSAG00000001436 (supercontig:LSalAtl2s:LSalAtl2s1245:53540:55574:-1 gene:EMLSAG00000001436 transcript:EMLSAT00000001436 description:"maker-LSalAtl2s1245-augustus-gene-0.16")

HSP 1 Score: 43.8986 bits (102), Expect = 4.074e-7
Identity = 23/69 (33.33%), Postives = 35/69 (50.72%), Query Frame = 0 
Query:    8 VYLGGLSYRARERDIEKFFKKFGRLREISLK--------NGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            +++ G+   A+E DI   F  FG ++ + L          GY  VEFE Y++A  A    +G DLLG +
Sbjct:   75 LFVTGIHEEAQEDDIHDSFSDFGEIKNVHLNLDRRTGFLKGYALVEFETYKEALSAKESLDGSDLLGQK 143
[Close]
BLAST of serine-arginine protein 55 vs. SwissProt
Match: gi|78099805|sp|P26686.4|SRR55_DROME (RecName: Full=Serine-arginine protein 55; Short=SRP55; AltName: Full=52 kDa bracketing protein; AltName: Full=B52 protein; AltName: Full=Protein enhancer of deformed)

HSP 1 Score: 97.0561 bits (240), Expect = 8.487e-25
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 0 
Query:    6 TRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            +RVY+GGL Y  RERD+E+FFK +GR R+I +KNGY FVEFEDYRDA+DAVYE NG++LLG+R
Sbjct:    4 SRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGER 66
[Close]
BLAST of serine-arginine protein 55 vs. SwissProt
Match: gi|20978758|sp|Q8VE97.1|SRSF4_MOUSE (RecName: Full=Serine/arginine-rich splicing factor 4; AltName: Full=Splicing factor, arginine/serine-rich 4)

HSP 1 Score: 93.5893 bits (231), Expect = 3.429e-23
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 0 
Query:    6 TRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
             RVY+G LSY+ARERD+E+FFK +G++ E+ LKNGY FVEF+D RDA+DAVYE NG+DL G+R
Sbjct:    2 PRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGER 64
[Close]
BLAST of serine-arginine protein 55 vs. SwissProt
Match: gi|20981726|sp|Q08170.2|SRSF4_HUMAN (RecName: Full=Serine/arginine-rich splicing factor 4; AltName: Full=Pre-mRNA-splicing factor SRP75; AltName: Full=SRP001LB; AltName: Full=Splicing factor, arginine/serine-rich 4)

HSP 1 Score: 92.4337 bits (228), Expect = 8.648e-23
Identity = 42/62 (67.74%), Postives = 54/62 (87.10%), Query Frame = 0 
Query:    7 RVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            RVY+G LSY+ARERD+E+FFK +G++ E+ LKNGY FVEF+D RDA+DAVYE NG+DL G+R
Sbjct:    3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGER 64
[Close]
BLAST of serine-arginine protein 55 vs. SwissProt
Match: gi|20981728|sp|Q13247.2|SRSF6_HUMAN (RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Pre-mRNA-splicing factor SRP55; AltName: Full=Splicing factor, arginine/serine-rich 6)

HSP 1 Score: 87.8113 bits (216), Expect = 1.519e-21
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0 
Query:    6 TRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
             RVY+G LSY  RE+DI++FF  +GRL E+ LKNGY FVEFED RDA+DAVYE NG++L G+R
Sbjct:    2 PRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGER 64
[Close]
BLAST of serine-arginine protein 55 vs. SwissProt
Match: gi|123796822|sp|Q3TWW8.1|SRSF6_MOUSE (RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Pre-mRNA-splicing factor SRP55; AltName: Full=Splicing factor, arginine/serine-rich 6 >gi|614138921|sp|G3V6S8.1|SRSF6_RAT RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Pre-mRNA-splicing factor SRP55; AltName: Full=Splicing factor, arginine/serine-rich 6)

HSP 1 Score: 86.2705 bits (212), Expect = 5.992e-21
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0 
Query:    6 TRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
             RVY+G LSY  RE+DI++FF  +GRL EI LKNGY FVEFED RDA+DAVYE N ++L G+R
Sbjct:    2 PRVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGER 64
[Close]
BLAST of serine-arginine protein 55 vs. SwissProt
Match: gi|122145041|sp|Q3B7L6.1|SRSF6_BOVIN (RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Splicing factor, arginine/serine-rich 6)

HSP 1 Score: 85.5001 bits (210), Expect = 1.017e-20
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0 
Query:    6 TRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
             RVY+G LSY  RE+DI++FF  +GRL  I LKNGY FVEFED RDA+DAVYE NG++L G+R
Sbjct:    2 PRVYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGER 64
[Close]
BLAST of serine-arginine protein 55 vs. SwissProt
Match: gi|56749460|sp|Q23121.1|RSP1_CAEEL (RecName: Full=Probable splicing factor, arginine/serine-rich 1; AltName: Full=CeSRp75; AltName: Full=RNA-binding protein srp-5)

HSP 1 Score: 78.5666 bits (192), Expect = 2.941e-18
Identity = 34/64 (53.12%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:    5 STRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            + R+Y+G L+ R  E+DIE FF+ +G++R++ LKNG+ FVEF+D RDAEDAV++ NG++L G+R
Sbjct:    2 AARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGER 65
[Close]
BLAST of serine-arginine protein 55 vs. SwissProt
Match: gi|1168968|sp|Q09167.1|SRSF5_RAT (RecName: Full=Serine/arginine-rich splicing factor 5; AltName: Full=Delayed-early protein HRS; AltName: Full=Insulin-induced growth response protein CL-4; AltName: Full=Pre-mRNA-splicing factor SRP40; AltName: Full=Splicing factor, arginine/serine-rich 5 >gi|410516929|sp|O35326.2|SRSF5_MOUSE RecName: Full=Serine/arginine-rich splicing factor 5; AltName: Full=Delayed-early protein HRS; AltName: Full=Pre-mRNA-splicing factor SRP40; AltName: Full=Splicing factor, arginine/serine-rich 5)

HSP 1 Score: 78.1814 bits (191), Expect = 3.066e-18
Identity = 36/62 (58.06%), Postives = 51/62 (82.26%), Query Frame = 0 
Query:    7 RVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            RV++G L+  ARE+D+E+FFK +GR+R+I LK G+ FVEFED RDA+DAVYE +G++L  +R
Sbjct:    5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSER 66
[Close]
BLAST of serine-arginine protein 55 vs. SwissProt
Match: gi|3929378|sp|Q13243.1|SRSF5_HUMAN (RecName: Full=Serine/arginine-rich splicing factor 5; AltName: Full=Delayed-early protein HRS; AltName: Full=Pre-mRNA-splicing factor SRP40; AltName: Full=Splicing factor, arginine/serine-rich 5)

HSP 1 Score: 78.1814 bits (191), Expect = 3.185e-18
Identity = 36/62 (58.06%), Postives = 51/62 (82.26%), Query Frame = 0 
Query:    7 RVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            RV++G L+  ARE+D+E+FFK +GR+R+I LK G+ FVEFED RDA+DAVYE +G++L  +R
Sbjct:    5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSER 66
[Close]
BLAST of serine-arginine protein 55 vs. SwissProt
Match: gi|56749459|sp|Q23120.1|RSP2_CAEEL (RecName: Full=Probable splicing factor, arginine/serine-rich 2; AltName: Full=CeSRp40; AltName: Full=RNA-binding protein srp-4)

HSP 1 Score: 75.8702 bits (185), Expect = 2.506e-17
Identity = 32/63 (50.79%), Postives = 50/63 (79.37%), Query Frame = 0 
Query:    6 TRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
             RVY+G L  RA +RD+E FF+ +G+L ++ +KNG+ FV+F+D RDA+DAV++ NG++L G+R
Sbjct:    2 VRVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCGER 64
[Close]
BLAST of serine-arginine protein 55 vs. nr
Match: gi|1130265242|ref|XP_019770955.1| (PREDICTED: serine-arginine protein 55-like [Dendroctonus ponderosae] >gi|478250294|gb|ENN70791.1| hypothetical protein YQE_12456, partial [Dendroctonus ponderosae] >gi|546674973|gb|ERL86243.1| hypothetical protein D910_03653 [Dendroctonus ponderosae])

HSP 1 Score: 109.383 bits (272), Expect = 5.039e-28
Identity = 47/64 (73.44%), Postives = 61/64 (95.31%), Query Frame = 0 
Query:    5 STRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            STRV++GGL+Y+ RERD+EKFF+K+GR++E+S+KNGY FVEFEDYRDAEDAVYE NG+DL+G+R
Sbjct:    2 STRVFVGGLTYKVRERDLEKFFRKYGRIKEVSMKNGYSFVEFEDYRDAEDAVYEMNGKDLMGER 65
[Close]
BLAST of serine-arginine protein 55 vs. nr
Match: gi|1069813727|ref|XP_018330393.1| (PREDICTED: serine-arginine protein 55-like isoform X2 [Agrilus planipennis])

HSP 1 Score: 103.99 bits (258), Expect = 1.575e-26
Identity = 44/63 (69.84%), Postives = 60/63 (95.24%), Query Frame = 0 
Query:    6 TRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            TRV++GGL+YR RERDIEKFF+K+GR++E+++KNG+ FVEF+DYRDA+DAVYE NG++LLG+R
Sbjct:    3 TRVFVGGLTYRVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGER 65
[Close]
BLAST of serine-arginine protein 55 vs. nr
Match: gi|1080050572|ref|XP_018566745.1| (serine-arginine protein 55 isoform X2 [Anoplophora glabripennis])

HSP 1 Score: 101.679 bits (252), Expect = 3.390e-26
Identity = 42/64 (65.62%), Postives = 60/64 (93.75%), Query Frame = 0 
Query:    5 STRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
             TRV++GGL+YR RERDIEKFF+K+GR++E+++KNG+ FVEF+D+RDA+DA+YE NG+DLLG++
Sbjct:    4 GTRVFVGGLTYRVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDHRDADDAIYELNGRDLLGEK 67
[Close]
BLAST of serine-arginine protein 55 vs. nr
Match: gi|826453138|ref|XP_012532655.1| (PREDICTED: serine-arginine protein 55 isoform X16 [Monomorium pharaonis])

HSP 1 Score: 106.686 bits (265), Expect = 4.265e-26
Identity = 45/67 (67.16%), Postives = 63/67 (94.03%), Query Frame = 0 
Query:    2 SEPSTRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            +E STRV++GGL+YR RERD+EKFF+K+GR++E+++KNG+ FVEF+DYRDA+DAVYE NG++LLG+R
Sbjct:    9 AEMSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGER 75
[Close]
BLAST of serine-arginine protein 55 vs. nr
Match: gi|826453128|ref|XP_012532653.1| (PREDICTED: serine-arginine protein 55 isoform X14 [Monomorium pharaonis])

HSP 1 Score: 106.686 bits (265), Expect = 4.701e-26
Identity = 45/67 (67.16%), Postives = 63/67 (94.03%), Query Frame = 0 
Query:    2 SEPSTRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            +E STRV++GGL+YR RERD+EKFF+K+GR++E+++KNG+ FVEF+DYRDA+DAVYE NG++LLG+R
Sbjct:    9 AEMSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGER 75
[Close]
BLAST of serine-arginine protein 55 vs. nr
Match: gi|952513963|gb|KRT80457.1| (RNA binding protein [Oryctes borbonicus])

HSP 1 Score: 105.916 bits (263), Expect = 4.914e-26
Identity = 44/63 (69.84%), Postives = 60/63 (95.24%), Query Frame = 0 
Query:    6 TRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            TRV++GGL+YR RERDIEKFF+K+GR++E+++KNG+ FVEF+DYRDA+DAVYE NG++LLG+R
Sbjct:    3 TRVFVGGLTYRVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGER 65
[Close]
BLAST of serine-arginine protein 55 vs. nr
Match: gi|826453113|ref|XP_012532650.1| (PREDICTED: serine-arginine protein 55 isoform X11 [Monomorium pharaonis])

HSP 1 Score: 106.686 bits (265), Expect = 5.425e-26
Identity = 45/67 (67.16%), Postives = 63/67 (94.03%), Query Frame = 0 
Query:    2 SEPSTRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            +E STRV++GGL+YR RERD+EKFF+K+GR++E+++KNG+ FVEF+DYRDA+DAVYE NG++LLG+R
Sbjct:    9 AEMSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGER 75
[Close]
BLAST of serine-arginine protein 55 vs. nr
Match: gi|826453070|ref|XP_012532641.1| (PREDICTED: serine/arginine-rich splicing factor 5 isoform X4 [Monomorium pharaonis])

HSP 1 Score: 106.686 bits (265), Expect = 5.705e-26
Identity = 45/67 (67.16%), Postives = 63/67 (94.03%), Query Frame = 0 
Query:    2 SEPSTRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            +E STRV++GGL+YR RERD+EKFF+K+GR++E+++KNG+ FVEF+DYRDA+DAVYE NG++LLG+R
Sbjct:    9 AEMSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGER 75
[Close]
BLAST of serine-arginine protein 55 vs. nr
Match: gi|826453143|ref|XP_012532656.1| (PREDICTED: serine-arginine protein 55 isoform X17 [Monomorium pharaonis])

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-26
Identity = 45/67 (67.16%), Postives = 63/67 (94.03%), Query Frame = 0 
Query:    2 SEPSTRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            +E STRV++GGL+YR RERD+EKFF+K+GR++E+++KNG+ FVEF+DYRDA+DAVYE NG++LLG+R
Sbjct:    9 AEMSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGER 75
[Close]
BLAST of serine-arginine protein 55 vs. nr
Match: gi|1279739893|ref|XP_022914816.1| (serine-arginine protein 55-like [Onthophagus taurus])

HSP 1 Score: 105.145 bits (261), Expect = 6.128e-26
Identity = 44/63 (69.84%), Postives = 60/63 (95.24%), Query Frame = 0 
Query:    6 TRVYLGGLSYRARERDIEKFFKKFGRLREISLKNGYCFVEFEDYRDAEDAVYECNGQDLLGDR 68
            TRV++GGL+YR RERDIEKFF+K+GR++E+++KNG+ FVEF+DYRDA+DAVYE NG++LLG+R
Sbjct:    3 TRVFVGGLTYRVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGER 65
The following BLAST results are available for this feature:
BLAST of serine-arginine protein 55 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 10
Match NameE-valueIdentityDescription
EMLSAG000000071462.205e-2665.63supercontig:LSalAtl2s:LSalAtl2s402:743406:749121:1... [more]
EMLSAG000000026055.904e-2358.82supercontig:LSalAtl2s:LSalAtl2s151:61867:66000:1 g... [more]
EMLSAG000000054752.645e-1757.14supercontig:LSalAtl2s:LSalAtl2s294:4530:9586:-1 ge... [more]
EMLSAG000000082034.847e-1349.23supercontig:LSalAtl2s:LSalAtl2s495:117181:128694:1... [more]
EMLSAG000000052761.025e-938.46supercontig:LSalAtl2s:LSalAtl2s2821:6099:8923:1 ge... [more]
EMLSAG000000071901.104e-940.30supercontig:LSalAtl2s:LSalAtl2s404:347783:355385:1... [more]
EMLSAG000000111643.136e-932.79supercontig:LSalAtl2s:LSalAtl2s75:177881:179657:-1... [more]
EMLSAG000000050009.024e-834.43supercontig:LSalAtl2s:LSalAtl2s260:351904:356465:1... [more]
EMLSAG000000084571.748e-735.21supercontig:LSalAtl2s:LSalAtl2s519:272141:277801:-... [more]
EMLSAG000000014364.074e-733.33supercontig:LSalAtl2s:LSalAtl2s1245:53540:55574:-1... [more]
back to top
BLAST of serine-arginine protein 55 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|78099805|sp|P26686.4|SRR55_DROME8.487e-2569.84RecName: Full=Serine-arginine protein 55; Short=SR... [more]
gi|20978758|sp|Q8VE97.1|SRSF4_MOUSE3.429e-2366.67RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|20981726|sp|Q08170.2|SRSF4_HUMAN8.648e-2367.74RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|20981728|sp|Q13247.2|SRSF6_HUMAN1.519e-2165.08RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|123796822|sp|Q3TWW8.1|SRSF6_MOUSE5.992e-2165.08RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|122145041|sp|Q3B7L6.1|SRSF6_BOVIN1.017e-2065.08RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|56749460|sp|Q23121.1|RSP1_CAEEL2.941e-1853.13RecName: Full=Probable splicing factor, arginine/s... [more]
gi|1168968|sp|Q09167.1|SRSF5_RAT3.066e-1858.06RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|3929378|sp|Q13243.1|SRSF5_HUMAN3.185e-1858.06RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|56749459|sp|Q23120.1|RSP2_CAEEL2.506e-1750.79RecName: Full=Probable splicing factor, arginine/s... [more]

Pages

back to top
BLAST of serine-arginine protein 55 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1130265242|ref|XP_019770955.1|5.039e-2873.44PREDICTED: serine-arginine protein 55-like [Dendro... [more]
gi|1069813727|ref|XP_018330393.1|1.575e-2669.84PREDICTED: serine-arginine protein 55-like isoform... [more]
gi|1080050572|ref|XP_018566745.1|3.390e-2665.63serine-arginine protein 55 isoform X2 [Anoplophora... [more]
gi|826453138|ref|XP_012532655.1|4.265e-2667.16PREDICTED: serine-arginine protein 55 isoform X16 ... [more]
gi|826453128|ref|XP_012532653.1|4.701e-2667.16PREDICTED: serine-arginine protein 55 isoform X14 ... [more]
gi|952513963|gb|KRT80457.1|4.914e-2669.84RNA binding protein [Oryctes borbonicus][more]
gi|826453113|ref|XP_012532650.1|5.425e-2667.16PREDICTED: serine-arginine protein 55 isoform X11 ... [more]
gi|826453070|ref|XP_012532641.1|5.705e-2667.16PREDICTED: serine/arginine-rich splicing factor 5 ... [more]
gi|826453143|ref|XP_012532656.1|5.770e-2667.16PREDICTED: serine-arginine protein 55 isoform X17 ... [more]
gi|1279739893|ref|XP_022914816.1|6.128e-2669.84serine-arginine protein 55-like [Onthophagus tauru... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold211_size255937supercontigscaffold211_size255937:73388..73594 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold211_size255937-processed-gene-0.6-mRNA-1snap_masked-scaffold211_size255937-processed-gene-0.6-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold211_size255937:73388..73594+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold211_size255937-processed-gene-0.6 ID=snap_masked-scaffold211_size255937-processed-gene-0.6|Name=serine-arginine protein 55|organism=Tigriopus kingsejongensis|type=gene|length=207bp|location=Sequence derived from alignment at scaffold211_size255937:73388..73594+ (Tigriopus kingsejongensis)
ATGAGCGAACCCTCCACCCGCGTCTACTTGGGCGGCTTGAGCTATCGAGC
GCGCGAGCGGGACATTGAGAAGTTCTTCAAGAAGTTCGGCCGCCTGCGCG
AGATCTCGCTCAAGAATGGCTACTGCTTCGTGGAGTTCGAGGACTATCGC
GATGCCGAGGATGCCGTCTACGAGTGCAACGGACAAGATTTGCTGGGTGA
CCGGTGA
back to top
Synonyms
The feature 'serine-arginine protein 55' has the following synonyms
Synonym
Tk07164
Add to Basket