GJ24301, snap_masked-scaffold272_size230267-processed-gene-0.2 (gene) Tigriopus kingsejongensis

Overview
NameGJ24301
Unique Namesnap_masked-scaffold272_size230267-processed-gene-0.2
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of GJ24301 vs. L. salmonis genes
Match: EMLSAG00000006349 (supercontig:LSalAtl2s:LSalAtl2s346:669977:670339:-1 gene:EMLSAG00000006349 transcript:EMLSAT00000006349 description:"augustus_masked-LSalAtl2s346-processed-gene-6.4")

HSP 1 Score: 128.257 bits (321), Expect = 7.730e-40
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 0 
Query:    3 LLAQPFACEVNFCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            + +  F+ + +FC  CG++LP +P +G++ C AC  +  I  F +  + Y+I FN+ ED    R  G    ++E PTVER C  CGH  MSYAALQLRSADEGQTVFFTCLKCKFKE+ENS
Sbjct:    1 MASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSE-PTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
[Close]
BLAST of GJ24301 vs. SwissProt
Match: gi|71153715|sp|Q6MFY5.1|RPA12_RAT (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1)

HSP 1 Score: 107.071 bits (266), Expect = 5.647e-30
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 0 
Query:    4 LAQP---FACEVNFCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            LA+P   F  +++FCP CG++LP    Q  V C  C   + +  F    ++ ++ FN++          + G E++GP V+RRC +CGHE M+Y   Q+RSADEGQTVF+TC+ CKF+E E+S
Sbjct:    3 LARPCSNFQSDLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKL--GTVIPMSVDEGPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINCKFQEKEDS 123
[Close]
BLAST of GJ24301 vs. SwissProt
Match: gi|71153713|sp|Q5TM50.1|RPA12_MACMU (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1)

HSP 1 Score: 105.145 bits (261), Expect = 3.842e-29
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 0 
Query:    8 FACEVNFCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            F  +++FC  CG++LP    Q  V C  C   + +  F    ++ ++ F+Q+    A     E G E +GP V+RRCP+CGHE M+Y   Q+RSADEGQTVF+TC  CKF+E E+S
Sbjct:   13 FQSDLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQL--GTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 126
[Close]
BLAST of GJ24301 vs. SwissProt
Match: gi|71153714|sp|Q791N7.1|RPA12_MOUSE (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1)

HSP 1 Score: 104.76 bits (260), Expect = 5.057e-29
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 0 
Query:    4 LAQP---FACEVNFCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            LA+P   F  +++FCP CG++LP    Q  V C  C   + +       ++ ++ FN++          + G E +GP ++RRCP+CGHE M+Y   Q+RSADEGQTVF+TC+ CKF+E E+S
Sbjct:    3 LARPRSNFQSDLDFCPDCGSVLPLPGIQDTVICSRCGFSIDVRDCEGKVVKTSVVFNKL--GATIPLSVDEGPELQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCINCKFQEKEDS 123
[Close]
BLAST of GJ24301 vs. SwissProt
Match: gi|71649339|sp|Q9P1U0.1|RPA12_HUMAN (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1 >gi|110287947|sp|Q1XHV8.1|RPA12_PANTR RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1)

HSP 1 Score: 104.375 bits (259), Expect = 6.207e-29
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 0 
Query:    8 FACEVNFCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            F  +++FC  CG++LP    Q  V C  C   + +  F    ++ ++ F+Q+    A     E G E +GP V+RRCP+CGHE M+Y   Q+RSADEGQTVF+TC  CKF+E E+S
Sbjct:   13 FQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQL--GTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 126
[Close]
BLAST of GJ24301 vs. SwissProt
Match: gi|110287946|sp|Q1RMP0.1|RPA12_BOVIN (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1)

HSP 1 Score: 104.375 bits (259), Expect = 7.737e-29
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 0 
Query:    1 MSLLAQPFACEVNFCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            ++ +   F  +++FCP CG++LP    Q  V C  C   + +  F    ++ ++ FN++    A     E G E +GP V+RRC +CGHE M+Y   Q+RSADEGQTVF+TC  CKF+E E+S
Sbjct:    3 LAGICSSFQSDLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKL--GTAMPLSMEEGPEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 123
[Close]
BLAST of GJ24301 vs. SwissProt
Match: gi|417695|sp|P32529.1|RPA12_YEAST (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=A12; AltName: Full=A12.2; AltName: Full=DNA-directed RNA polymerase I 13.7 kDa polypeptide)

HSP 1 Score: 78.9518 bits (193), Expect = 6.861e-19
Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 0 
Query:   14 FCPSCGTLL--PTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDS-RAKRR----GGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            FC  CG LL  P      NV C  C+   P   FS L +  T   +    S RAK+       +  E  +G T++ +CP+CG+E+M+Y  LQLRSADEG TVF+TC  C +K   N+
Sbjct:    9 FCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQFSNLKVVTTTADDAFPSSLRAKKSVVKTSLKKNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTNN 125
[Close]
BLAST of GJ24301 vs. SwissProt
Match: gi|9297043|sp|O94703.1|RPA12_SCHPO (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=DNA-directed RNA polymerase I 13.1 kDa polypeptide)

HSP 1 Score: 77.0258 bits (188), Expect = 3.834e-18
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 0 
Query:   14 FCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEA---EGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            FC  CG LL +   Q    C  CQ   P E F+ L +E T        S  K +   +  E+   E  T+E +CPKCG++ M++  LQLRSADEG TVF+ C +C +K S N+
Sbjct:    9 FCSECGNLLESTTAQWTT-CDQCQSVYPSEQFANLVVE-TKSSASAFPSALKLKHSIVQVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTNN 119
[Close]
BLAST of GJ24301 vs. SwissProt
Match: gi|3024570|sp|Q58548.1|TFS_METJA (RecName: Full=Transcription factor S; AltName: Full=Transcription elongation factor IIS/RNA polymerase subunit homolog; Short=TFIIS/RPSU homolog)

HSP 1 Score: 58.5362 bits (140), Expect = 4.367e-11
Identity = 37/104 (35.58%), Postives = 52/104 (50.00%), Query Frame = 0 
Query:   12 VNFCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKC 115
            V FCP C  L+  LP+ G + C  C +E   E+ +E + EY  +   +E+ + K    E       PT    CPKCGH +  +   Q R ADE +T F+ C KC
Sbjct:    2 VKFCPKCNNLM--LPKDGKLKCAVCGYEE--ETTAEGSKEYEYK-EHLENKKEKITVIESEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKC 100
[Close]
BLAST of GJ24301 vs. SwissProt
Match: gi|74499484|sp|Q9P9I8.1|TFS_METTL (RecName: Full=Transcription factor S; AltName: Full=Transcription elongation factor IIS/RNA polymerase subunit homolog; Short=TFIIS/RPSU homolog)

HSP 1 Score: 55.8398 bits (133), Expect = 4.180e-10
Identity = 36/105 (34.29%), Postives = 52/105 (49.52%), Query Frame = 0 
Query:   12 VNFCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEAEG-PTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKC 115
            V FCP C  ++  LP+ G + C  C  E   E     T EY ++    E   AK++   + E+ +  PT    CP CG+ + S+   Q R ADE +T F+ C KC
Sbjct:    2 VEFCPKCNNIM--LPKNGRLKCTVCGFE---EELGNRTEEYELK----EKIEAKKQEVTVIEDVDTLPTTRIECPSCGNMEASWWLQQTRCADEPETRFYKCKKC 97
[Close]
BLAST of GJ24301 vs. SwissProt
Match: gi|3334318|sp|O13896.1|RPC10_SCHPO (RecName: Full=DNA-directed RNA polymerase III subunit RPC10; Short=RNA polymerase III subunit C10; AltName: Full=DNA-directed RNA polymerases III 12.5 kDa polypeptide; AltName: Full=RNA polymerase III subunit C11)

HSP 1 Score: 55.4546 bits (132), Expect = 6.435e-10
Identity = 38/114 (33.33%), Postives = 58/114 (50.88%), Query Frame = 0 
Query:   12 VNFCPSCGT-LLPTLPRQG-NVF-CQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESEN 122
            + FCP+CG  L+  +  +G N F C+ C +  PI +F     E+  +  +V+D      G E  E  +   V     KC + +  +  LQ+RSADE  + F+ C KCKF+  EN
Sbjct:    1 MQFCPTCGNHLIVAVDEEGRNAFDCRTCPYHFPISTFLYSRHEFAQK--EVDDVLG---GEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWREN 109
[Close]
BLAST of GJ24301 vs. nr
Match: gi|195391074|ref|XP_002054188.1| (uncharacterized protein Dvir_GJ24301 [Drosophila virilis] >gi|194152274|gb|EDW67708.1| uncharacterized protein Dvir_GJ24301 [Drosophila virilis])

HSP 1 Score: 144.436 bits (363), Expect = 3.684e-42
Identity = 69/112 (61.61%), Postives = 85/112 (75.89%), Query Frame = 0 
Query:   14 FCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGE--EAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            FCPSCG++LP L  +GNVFC  C+ E   + +S  T EYTI FN  + S+  ++G    +  EA+GP VER+CPKCG++KMSYA LQLRSADEGQTVFFTCLKCK+KESENS
Sbjct:   10 FCPSCGSILPPLQVKGNVFCYNCKQEFSPDVYSGETSEYTIHFNSYDPSKLSKKGNRETDTAEADGPVVERKCPKCGNDKMSYATLQLRSADEGQTVFFTCLKCKYKESENS 121
[Close]
BLAST of GJ24301 vs. nr
Match: gi|1314975503|ref|XP_023169150.1| (DNA-directed RNA polymerase I subunit RPA12 [Drosophila hydei])

HSP 1 Score: 144.05 bits (362), Expect = 4.586e-42
Identity = 71/112 (63.39%), Postives = 85/112 (75.89%), Query Frame = 0 
Query:   14 FCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGE--EAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            FCPSCG++LP L  +GNVFC  C+ E   + F   T EYTI FN+ + S+  ++G    E  EA+GP VER+CPKCG+EKMSYA LQLRSADEGQTVFFTCLKCK+KESENS
Sbjct:   10 FCPSCGSILPPLQIKGNVFCYNCKQESSPDVFIGETSEYTIHFNRFDPSKISKKGIPKSEAAEADGPVVERKCPKCGNEKMSYATLQLRSADEGQTVFFTCLKCKYKESENS 121
[Close]
BLAST of GJ24301 vs. nr
Match: gi|1060152404|ref|XP_017874134.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Drosophila arizonae])

HSP 1 Score: 140.969 bits (354), Expect = 8.621e-41
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 0 
Query:   14 FCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGE--EAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            FCPSCG++LP L  +GNVFC  C+ E   + +   T EYTI FN  + S+  ++  +  E  EA+GP VER+CPKCG++KMSYA LQLRSADEGQTVFFTCLKCK+KESENS
Sbjct:   10 FCPSCGSILPPLQVKGNVFCYNCKQEFSPDVYIGETSEYTIHFNSFDPSKISKKVTQKSEATEADGPVVERKCPKCGNDKMSYATLQLRSADEGQTVFFTCLKCKYKESENS 121
[Close]
BLAST of GJ24301 vs. nr
Match: gi|1062651936|ref|XP_017964192.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Drosophila navojoa])

HSP 1 Score: 140.584 bits (353), Expect = 1.061e-40
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 0 
Query:   14 FCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEE--AEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            FCPSCG++LP L  +GNVFC  C+ E   + +   T EYTI FN  + S+  ++  +  EE  A+GP VER+CPKCG++KMSYA LQLRSADEGQTVFFTCLKCK+KESENS
Sbjct:   10 FCPSCGSILPPLQVKGNVFCYNCKQEFSPDVYIGETSEYTIHFNSFDPSKISKKITQKSEETEADGPVVERKCPKCGNDKMSYATLQLRSADEGQTVFFTCLKCKYKESENS 121
[Close]
BLAST of GJ24301 vs. nr
Match: gi|1060251385|ref|XP_017845940.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Drosophila busckii])

HSP 1 Score: 139.813 bits (351), Expect = 2.210e-40
Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = 0 
Query:   14 FCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSR--AKRRGGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            FCPSCG+LLP L  +GNV C  C+ E   + +S  + E+TI FN  + ++   K  G     EA+GP VER+CPKCGHEKMSYA LQLRSADEGQTVFFTCLKCK+KESENS
Sbjct:   10 FCPSCGSLLPPLAVKGNVICYNCKQEFLPDVYSGESSEFTIHFNTYDPNKLLKKSHGESEDAEADGPVVERKCPKCGHEKMSYATLQLRSADEGQTVFFTCLKCKYKESENS 121
[Close]
BLAST of GJ24301 vs. nr
Match: gi|1236487096|ref|XP_022221195.1| (DNA-directed RNA polymerase I subunit RPA12 [Drosophila obscura])

HSP 1 Score: 139.813 bits (351), Expect = 2.284e-40
Identity = 69/112 (61.61%), Postives = 81/112 (72.32%), Query Frame = 0 
Query:   14 FCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGG--ELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            FCPSCG++LP L  +GNV C  C  E   + +S    EY+I+FN  + S+   R       EEA+GP VER+CPKCGHEKMSYA LQLRSADEGQTVFFTCLKCK+KESENS
Sbjct:   10 FCPSCGSILPPLQVKGNVICHNCNQEFLPDVYSGEKTEYSIQFNTYDPSKVFNRTKRESESEEADGPVVERKCPKCGHEKMSYATLQLRSADEGQTVFFTCLKCKYKESENS 121
[Close]
BLAST of GJ24301 vs. nr
Match: gi|195055055|ref|XP_001994438.1| (GH16255 [Drosophila grimshawi] >gi|193892201|gb|EDV91067.1| GH16255 [Drosophila grimshawi])

HSP 1 Score: 139.428 bits (350), Expect = 2.471e-40
Identity = 70/117 (59.83%), Postives = 82/117 (70.09%), Query Frame = 0 
Query:    8 FACEVNFCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGE-EAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            F     FCPSCG++LP L  +GNVFC  C+ E   + +     EYTI FN  + S   ++     E EA+GP VER+CPKCGHEKMSYA LQLRSADEGQTVFFTCLKCK+KESENS
Sbjct:    4 FNNRAGFCPSCGSILPPLQVKGNVFCFNCKQEFSPDVYIGEKSEYTINFNSYDPSELNKKVHRESETEADGPVVERKCPKCGHEKMSYATLQLRSADEGQTVFFTCLKCKYKESENS 120
[Close]
BLAST of GJ24301 vs. nr
Match: gi|195112999|ref|XP_002001059.1| (uncharacterized protein Dmoj_GI22183 [Drosophila mojavensis] >gi|193917653|gb|EDW16520.1| uncharacterized protein Dmoj_GI22183 [Drosophila mojavensis])

HSP 1 Score: 138.658 bits (348), Expect = 5.305e-40
Identity = 67/112 (59.82%), Postives = 83/112 (74.11%), Query Frame = 0 
Query:   14 FCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGE--EAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            FCPSCG++LP L  +GNVFC  C+ E   + +   T EYTI FN  +  +  ++  +  E  EA+GP VER+CPKCG++KMSYA LQLRSADEGQTVFFTCLKCK+KESENS
Sbjct:   10 FCPSCGSILPPLQVKGNVFCYNCKQEFSPDVYIGETSEYTIHFNSFDPRKISKKVTQKSEAAEADGPVVERKCPKCGNDKMSYATLQLRSADEGQTVFFTCLKCKYKESENS 121
[Close]
BLAST of GJ24301 vs. nr
Match: gi|1036065206|ref|XP_016935983.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Drosophila suzukii] >gi|1036065208|ref|XP_016935984.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Drosophila suzukii])

HSP 1 Score: 137.502 bits (345), Expect = 1.606e-39
Identity = 68/111 (61.26%), Postives = 80/111 (72.07%), Query Frame = 0 
Query:   14 FCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGE-EAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            FCPSCG++LP L  +GNV C  C+ E   + +S    E+TI FN  +  +   R  +  E EAEGP VER+CPKC H+KMSYA LQLRSADEGQTVFFTCLKCKFKESENS
Sbjct:   10 FCPSCGSILPELQVKGNVTCHNCKEEFQADVYSGEKSEFTIHFNTYDAKKLLNRTKQESESEAEGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
[Close]
BLAST of GJ24301 vs. nr
Match: gi|1036916777|ref|XP_016959990.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Drosophila biarmipes])

HSP 1 Score: 137.502 bits (345), Expect = 1.753e-39
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 0 
Query:   14 FCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGE-EAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123
            FCPSCG++LP L  +GNV C  C+ E   + +S    E+TI FN  +  +   R  +  E EA+GP VER+CPKC H+KMSYA LQLRSADEGQTVFFTCLKCKFKESENS
Sbjct:   10 FCPSCGSILPELQVKGNVICHNCKEEFQADVYSGEKSEFTIHFNTYDAKKLLSRTKQESESEADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
The following BLAST results are available for this feature:
BLAST of GJ24301 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000063497.730e-4052.07supercontig:LSalAtl2s:LSalAtl2s346:669977:670339:-... [more]
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BLAST of GJ24301 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
gi|71153715|sp|Q6MFY5.1|RPA12_RAT5.647e-3041.46RecName: Full=DNA-directed RNA polymerase I subuni... [more]
gi|71153713|sp|Q5TM50.1|RPA12_MACMU3.842e-2943.10RecName: Full=DNA-directed RNA polymerase I subuni... [more]
gi|71153714|sp|Q791N7.1|RPA12_MOUSE5.057e-2940.65RecName: Full=DNA-directed RNA polymerase I subuni... [more]
gi|71649339|sp|Q9P1U0.1|RPA12_HUMAN6.207e-2943.10RecName: Full=DNA-directed RNA polymerase I subuni... [more]
gi|110287946|sp|Q1RMP0.1|RPA12_BOVIN7.737e-2940.65RecName: Full=DNA-directed RNA polymerase I subuni... [more]
gi|417695|sp|P32529.1|RPA12_YEAST6.861e-1940.17RecName: Full=DNA-directed RNA polymerase I subuni... [more]
gi|9297043|sp|O94703.1|RPA12_SCHPO3.834e-1839.82RecName: Full=DNA-directed RNA polymerase I subuni... [more]
gi|3024570|sp|Q58548.1|TFS_METJA4.367e-1135.58RecName: Full=Transcription factor S; AltName: Ful... [more]
gi|74499484|sp|Q9P9I8.1|TFS_METTL4.180e-1034.29RecName: Full=Transcription factor S; AltName: Ful... [more]
gi|3334318|sp|O13896.1|RPC10_SCHPO6.435e-1033.33RecName: Full=DNA-directed RNA polymerase III subu... [more]

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BLAST of GJ24301 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|195391074|ref|XP_002054188.1|3.684e-4261.61uncharacterized protein Dvir_GJ24301 [Drosophila v... [more]
gi|1314975503|ref|XP_023169150.1|4.586e-4263.39DNA-directed RNA polymerase I subunit RPA12 [Droso... [more]
gi|1060152404|ref|XP_017874134.1|8.621e-4160.71PREDICTED: DNA-directed RNA polymerase I subunit R... [more]
gi|1062651936|ref|XP_017964192.1|1.061e-4060.71PREDICTED: DNA-directed RNA polymerase I subunit R... [more]
gi|1060251385|ref|XP_017845940.1|2.210e-4061.61PREDICTED: DNA-directed RNA polymerase I subunit R... [more]
gi|1236487096|ref|XP_022221195.1|2.284e-4061.61DNA-directed RNA polymerase I subunit RPA12 [Droso... [more]
gi|195055055|ref|XP_001994438.1|2.471e-4059.83GH16255 [Drosophila grimshawi] >gi|193892201|gb|ED... [more]
gi|195112999|ref|XP_002001059.1|5.305e-4059.82uncharacterized protein Dmoj_GI22183 [Drosophila m... [more]
gi|1036065206|ref|XP_016935983.1|1.606e-3961.26PREDICTED: DNA-directed RNA polymerase I subunit R... [more]
gi|1036916777|ref|XP_016959990.1|1.753e-3960.36PREDICTED: DNA-directed RNA polymerase I subunit R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold272_size230267supercontigscaffold272_size230267:31516..31887 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold272_size230267-processed-gene-0.2-mRNA-1snap_masked-scaffold272_size230267-processed-gene-0.2-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold272_size230267:31516..31887+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold272_size230267-processed-gene-0.2 ID=snap_masked-scaffold272_size230267-processed-gene-0.2|Name=GJ24301|organism=Tigriopus kingsejongensis|type=gene|length=372bp|location=Sequence derived from alignment at scaffold272_size230267:31516..31887+ (Tigriopus kingsejongensis)
ATGTCGCTGCTGGCCCAGCCCTTCGCGTGCGAGGTGAACTTTTGCCCGTC
CTGCGGCACCCTTTTGCCCACTCTGCCCCGCCAAGGCAACGTCTTCTGTC
AGGCCTGCCAGCACGAAGTGCCCATTGAGAGCTTCTCGGAGTTGACGCTC
GAGTACACGATCCGCTTCAATCAGGTCGAGGACAGTCGGGCCAAGCGGAG
AGGCGGCGAGCTTGGGGAAGAAGCCGAAGGTCCCACGGTCGAGCGGCGCT
GTCCCAAGTGCGGCCACGAGAAAATGTCCTACGCCGCCCTCCAACTCCGA
TCGGCCGATGAGGGCCAAACCGTGTTCTTTACTTGTCTCAAGTGCAAGTT
TAAAGAGAGTGAAAATTCGTAG
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Synonyms
The feature 'GJ24301' has the following synonyms
Synonym
Tk00251
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