thyroid hormone receptor alpha 1, snap_masked-scaffold28_size608977-processed-gene-1.5 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 127.102 bits (318), Expect = 2.174e-32 Identity = 94/392 (23.98%), Postives = 174/392 (44.39%), Query Frame = 0 Query: 42 KICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQSHV--KSSPNLPRVPDL-ILNSDDTTYISDQMRMMDFHFHQSMDAVCRQKPDF---------------------------IRQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVLSSIQEFRDLPWQDCQELFS-VNSQIMIALKHAVSLQETDWCFVKIIERALKSGQFPMLNELGHELAAHGLSEKKPQLTYNQVFSSPWAANGQDEDRHLFLTQKMQGWPRKKDTDRVDDVQMNLLKLIILF--STEFVTLE-----RGDIVEHVQMRFIRLLQKYLKFKYGSEAGVKLGNGLLILSYAKEV 395 ++C +CG+VAG H YYGGQ C+ CRAFFRR VQ + Y+ C +C+I+ TR+ CQ CRF+KC+ +GM+ +WVL D ER+ + + + ++P LP D L S + +++ + F +++++ + DF I+ ++ +S S F QE + D F +++ +E + +C ++ +NS ++ LK+ +LQ IE ++ H + H L + + R L L ++ W + D ++ ILF T+ VTL ++++ Q+ ++++L++Y + +Y ++ K G+++ S EV Sbjct: 104 RLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSKKSAMILNNNTPLLPSFDDPGGLTSLEVSFVFTINNKLRKSFFDNVNSMVIRNSDFLIDFVDYLAFPARSEYPYLRMAMSLEKIQFLSFISMGTSRSSLHFSQEDLYILYDINFPKINTFREVSSITTTNCPDIDELINSVHLLHLKNNETLQN----LPSRIEFTIQ-----------HYILNHHL----------------YPNENDNHSRFLHLVSQINSWVMNDENHTKKDKFSYIIMFFILFFDRTDSVTLSGVKFRDPELIDRAQLIYVQMLKRYFQRRYPRKSSKKFLKGIMLPSLIAEV 464
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 124.79 bits (312), Expect = 1.361e-31 Identity = 90/396 (22.73%), Postives = 180/396 (45.45%), Query Frame = 0 Query: 17 DQNQITQGSRSHLDSDGSSSV---SSTSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQSHVKSSPNLPRVPDLI----LNSDDTTYISDQMRMMDFHFHQSMDAVCRQKPDFIRQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVLSSIQEFRDLPW--QDCQELFSVNSQIMIALKHAVSLQETDWCFVKIIERALKSGQFPMLNELGHELAAHGLSEKKPQLTYNQVFSSPWAANGQDE-DRHLFLTQKMQGWPRKKDTDRVDDVQMNLLKLIILF-------STEFVTLERGDIVEHVQMRFIRLLQKYLKFKYGSEAGVKLGNGLLILSYAKEV 395 DQ + + + L D S + + ++C +CG+VAG H YYGGQ C+ CRAFFRR VQ + Y+ C +C+I+ TR+ CQ CRF+KC+ +GM+++WV D ER+ + +S + + N P +P L S + + + + +F +++ + ++ DF+ + S+Y + + L + ++S L + +D L+ +NS + + S++ ++ + + +++ L L + L + + + + N D L L ++ W + D ++ L ILF V + ++++ Q+ ++++L++Y + KY ++ K G+++ S EV Sbjct: 77 DQENFNELNSTTLSEDSSQIIIGRQALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSK-KSAMTLNNNKPPLPSFNDPEGLTSIEVSIVFTINNNLHKNFLDNLNTMVKRDSDFLIDFVDYLAFPTRSEYPYLKMAMSLEKIQLLSLISMGTSNSSLHFSQEDLYVLYQINSPKINIFRELSSIKNPNFPDIDELINSVR------LLHLNNNETIQNLPSRVEFTLQHYLLNHDLCPNENDNYSTFLHLVSQINSWVMDDENVIKQDKFSYIIMLFILFFDRTDSVKISGVKFKDPEMIDRAQLAYVQMLKRYFQRKYPRKSSKKFLKGIMLPSLIAEV 465
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 90.5077 bits (223), Expect = 7.283e-20 Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 0 Query: 40 TSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRR 127 T +C VCGD A H +YGG C CRAFFRR V + + + C + C+I TTR+ CQ CR++KCL SGMK +WVLS+ E+ R Sbjct: 87 TEMVCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPK--HTTYFC-STDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSR 171
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 86.2705 bits (212), Expect = 1.783e-18 Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 0 Query: 41 SKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSN----CLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER 124 + +C +CGD+A HN+YG C CRAFF R V + + CV N + C+I K TR CQ CR+R CL +GM ++V + ER Sbjct: 134 TDVCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000009969 (supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-1 gene:EMLSAG00000009969 transcript:EMLSAT00000009969 description:"maker-LSalAtl2s651-augustus-gene-2.5") HSP 1 Score: 79.7221 bits (195), Expect = 2.282e-16 Identity = 99/420 (23.57%), Postives = 168/420 (40.00%), Query Frame = 0 Query: 17 DQNQITQGSRSHLDSDGSSSVSSTSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVCRQKPDFIRQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVLSSIQEFRDLP-WQDCQELFSVNSQIMIALKHAVSLQETDWCFVKIIERALKSGQFPMLNELGHELAAHGLSEKKPQLTYNQVFSSPWAANGQDEDRHLFLTQKM---QGWPRKKDTDRVDDVQMNLLKLIILFSTEFVTLERGDIVEHVQMRFIRLLQKYLKFKYGSEAGVKLGNGLLILSYAKEVIDIQQRQFWPAQHWMDVCALGLLSAALVCESGADWSL 432 D + + S S S + SST +C+VCGD + +YG C GC++FF+RCV+R + + C + +C +D+ R +CQ CRF+KCL GMK E ++ ++ S+P DL + ++Y+S + ++ R +P Q L N+ + +C + S+I+ R++P + + Q + V L W + + L + Q M + L A GL +SP AA DR + + Q K +VD + LK I+LFST+ L ++E +Q + L Y K + ++ + G LL L + V Q + + L+ L+C + W + Sbjct: 48 DHHIVNNSSSLTAPSPSSGTNSSTEILCVVCGDKSS-GKHYGQFTCEGCKSFFKRCVRRSL--TFQC-RSKKSCPVDQHHRNQCQHCRFKKCLNMGMK-------KEAVQKGRTTTTSAPIFNYSNDLFSPNTGSSYLSTYISLL-----------LRAEPYTTSQYGQLQMAASNNIIG----IDNICEFAARLLFSAIEWARNIPGFPELQ------------ITDQVGLLRMVWSELFV----LNASQCHMPLHVAPLLVAXGL------------HASPLAA-----DRXVAFMDHIRVFQEQVEKLKALQVDAAEXACLKAIVLFSTDPPGLTDITLIEQLQEKSQCALDDYCKIHHPTKPS-RFGKLLLRLPSLRTVSSAVIEQLFFIRLVGKTPIETLIRDMLLCGTAFQWPI 407
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10") HSP 1 Score: 77.411 bits (189), Expect = 1.456e-15 Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0 Query: 42 KICLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER--KRRYQSHVKSSPNLPRVPDLIL 146 + CLVCGD+A G H YG C C+AFF+R +Q +I + A++ C I+K R+ CQ CRF+KCL GM V D R +++Y+ ++SSP + P L Sbjct: 269 RTCLVCGDIASGFH--YGVSSCEACKAFFKRTIQGNIEYT---XPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGRQKYRRMIESSPYIQPPPKKTL 371
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6") HSP 1 Score: 77.411 bits (189), Expect = 1.557e-15 Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 0 Query: 31 SDGSSSVSSTSKICLVCGD-VAGLHNYYGGQVCSGCRAFFRRCVQ-RDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRR 127 SD S ++C VCGD V+G H YG C C+ FF+R VQ + +Y CV A+ +C+IDKT R+RC CRF+KCL GMK+ V D R R Sbjct: 173 SDQPDSKDGMEELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQNKKVYT---CV-ADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGR 265
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 76.6406 bits (187), Expect = 2.446e-15 Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 0 Query: 44 CLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVL 119 C +C D A H +YG C CRAFFRR V I + + C I K TR+ CQ CRF KCL +GMK TWV+ Sbjct: 63 CHICSDTANDHIHYGAIACXSCRAFFRRAV---ICNAEYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVM 135
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1") HSP 1 Score: 75.0998 bits (183), Expect = 1.063e-14 Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 40 TSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDI-YQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRR 127 S +C VCGD A +YG + C GC+ FF+R VQ++ Y L A+ NC +DK R RCQ CRF+KCL GM V +D + RR Sbjct: 405 ASLLCAVCGDNAACQ-HYGVRTCEGCKGFFKRTVQKNAKYVCL----ADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRR 488
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53") HSP 1 Score: 73.9442 bits (180), Expect = 2.733e-14 Identity = 43/94 (45.74%), Postives = 55/94 (58.51%), Query Frame = 0 Query: 30 DSDGSSSVSSTSKICLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQ-RDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSD 121 D++ SS S +C++C D A GLH YG C GC+ FF+R VQ + IY CV A+ C I+K R RCQ CRF+KCL GM + V D Sbjct: 269 DNNNPSSQPQQSLVCMICEDRATGLH--YGIITCEGCKGFFKRTVQNKRIYT---CV-ADGECEINKAQRNRCQYCRFQKCLQKGMVLAAVRED 356
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|6094469|sp|Q98867.1|THAA_DANRE (RecName: Full=Thyroid hormone receptor alpha-A; Short=zTRalpha-A; AltName: Full=Nuclear receptor subfamily 1 group A member 1-A; AltName: Full=Thyroid hormone receptor alpha-1; Short=TRalpha-1) HSP 1 Score: 87.4261 bits (215), Expect = 1.462e-17 Identity = 64/215 (29.77%), Postives = 102/215 (47.44%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER--KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC---RQK----PDFIRQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ S C + +S C+IDK TR +CQ CRFRKC+ GM + VL D +R KRR + + + N + T ++ M H+ +A +QK P+ I Q + D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 57 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSC-KYDSCCIIDKITRNQCQLCRFRKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKKEEIVKTLHNRPEPTVSEWELIRMVTEAHRHTNAQGPHWKQKRKFLPEDIGQSPAPTSDNDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 268
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|135705|sp|P10827.1|THA_HUMAN (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1; AltName: Full=V-erbA-related protein 7; Short=EAR-7; AltName: Full=c-erbA-1; AltName: Full=c-erbA-alpha) HSP 1 Score: 87.8113 bits (216), Expect = 1.467e-17 Identity = 67/226 (29.65%), Postives = 111/226 (49.12%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER------------KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC-----RQK--PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + +S C+IDK TR +CQ CRF+KC+ GM + VL D +R +RR + ++S L + P+ D +I+ + H+S +A R+K PD I Q ++S G+ D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 53 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSC-KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRS---LQQRPEPTPEEWDLIHIATEA-------HRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 265
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|13124576|sp|O97716.1|THA_PIG (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1; AltName: Full=c-erbA-1; AltName: Full=c-erbA-alpha) HSP 1 Score: 87.8113 bits (216), Expect = 1.980e-17 Identity = 66/226 (29.20%), Postives = 111/226 (49.12%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER------------KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC-----RQK--PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + +S C+IDK TR +CQ CRF+KC+ GM + VL D +R +RR + ++S L + P+ D +++ + H+S +A R+K PD I Q ++S G+ D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 53 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSC-KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRS---LQQRPEPTPEEWDLIHVATEA-------HRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 265
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|52001262|sp|P63059.1|THA_RAT (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1; AltName: Full=c-erbA-1; AltName: Full=c-erbA-alpha) HSP 1 Score: 87.4261 bits (215), Expect = 2.226e-17 Identity = 66/226 (29.20%), Postives = 111/226 (49.12%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER------------KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC-----RQK--PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + +S C+IDK TR +CQ CRF+KC+ GM + VL D +R +RR + ++S L + P+ D +++ + H+S +A R+K PD I Q ++S G+ D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 53 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSC-KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRS---LQQRPEPTPEEWDLIHVATEA-------HRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 265
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|284018143|sp|P63058.2|THA_MOUSE (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1; AltName: Full=c-erbA-1; AltName: Full=c-erbA-alpha) HSP 1 Score: 87.4261 bits (215), Expect = 2.226e-17 Identity = 66/226 (29.20%), Postives = 111/226 (49.12%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER------------KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC-----RQK--PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + +S C+IDK TR +CQ CRF+KC+ GM + VL D +R +RR + ++S L + P+ D +++ + H+S +A R+K PD I Q ++S G+ D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 53 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSC-KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRS---LQQRPEPTPEEWDLIHVATEA-------HRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 265
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|2500920|sp|Q28570.1|THA_SHEEP (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1) HSP 1 Score: 87.0409 bits (214), Expect = 2.327e-17 Identity = 78/274 (28.47%), Postives = 132/274 (48.18%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER------------KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC-----RQK--PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQDCQELFSVNSQIMIALKHAVSL-QETDWCFVK----IIERALKSGQFPMLN----ELGHELAAHGLSE 284 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + +S C+IDK TR +CQ CRF+KC+ GM + VL D +R +RR + ++S L + P+ D +++ + H+S +A R+K PD I Q ++S G+ D + + EF + + +V+ + F +LP +D L +++L+ AV E+D + + LK+G +++ ELG L+A L + Sbjct: 53 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSC-KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRS---LQQRPEPTPEEWDLIHVATEA-------HRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDD 313
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A) HSP 1 Score: 84.3445 bits (207), Expect = 1.382e-16 Identity = 64/233 (27.47%), Postives = 111/233 (47.64%), Query Frame = 0 Query: 27 SHLDSDGSSSVSSTSKICLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER--KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC---RQK----PDFIRQMAVL-SYYGGNSDYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 S+LD D ++C+VCGD A G H Y C GC+ FFRR +Q++++ S C + C+IDK TR +CQ CRF+KC+ GM VL D++R KR+ + + ++ + T ++ + H + +A +QK P+ I Q ++ + GG D + + +F + + +V+ + F +LP +D C E+ S+ + + Sbjct: 11 SYLDKD---------ELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSC-KYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSLVQKPEPTQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAV 231
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 83.1889 bits (204), Expect = 2.645e-16 Identity = 64/233 (27.47%), Postives = 110/233 (47.21%), Query Frame = 0 Query: 27 SHLDSDGSSSVSSTSKICLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER--KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC---RQK----PDFIRQMAVL-SYYGGNSDYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 S+LD D ++C+VCGD A G H Y C GC+ FFRR +Q++++ S C + C+IDK TR +CQ CRF+KC+ GM VL D +R KR+ + + ++ + T ++ + H + +A +QK P+ I Q ++ + GG D + + +F + + +V+ + F +LP +D C E+ S+ + + Sbjct: 11 SYLDKD---------ELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSC-KYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRRKDELQKTLVQKPEPTPEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAV 231
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|6094471|sp|Q91242.1|THAB_PAROL (RecName: Full=Thyroid hormone receptor alpha-B; Short=THR-alpha-B; AltName: Full=Nuclear receptor subfamily 1 group A member 1-B) HSP 1 Score: 83.5741 bits (205), Expect = 2.864e-16 Identity = 66/217 (30.41%), Postives = 105/217 (48.39%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER--KRRYQSHVKSSPNLPRVPDLILNSDDTTYIS-DQMRMM-DFHFH-QSMDAVCRQK----PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVLSSIQEF----RDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ S C + + C+IDK TR +CQ CRF+KC+ GM + VL D +R KRR + + + N + T + +RM+ + H H + A +QK PD I Q V G+ D + + EF + + +V+ ++ LP +D C E+ S+ + + Sbjct: 33 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSC-KYDCCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLIEENRERRKKEEIVKTLQNRPEPTGAEWELIRMVTEAHRHTNAQGAQWKQKRKFLPDKIGQSPVAPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEQLPCEDQIILLKGCCMEIMSLRAAM 246
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|6094470|sp|Q91241.1|THAA_PAROL (RecName: Full=Thyroid hormone receptor alpha-A; Short=THR-alpha-A; AltName: Full=Nuclear receptor subfamily 1 group A member 1-A) HSP 1 Score: 83.1889 bits (204), Expect = 3.580e-16 Identity = 63/216 (29.17%), Postives = 103/216 (47.69%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER---KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRM-MDFHFHQSMDAVC-RQKPDFI-----RQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ S C + C+IDK TR +CQ CRF+KC+ GM + VL D +R +R + + + V L + + T + +RM D H H + +QK F+ + V + G D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSC-KYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKREEMVRTLQIRPEPDTAEWELIRMATDAHRHTNAQGSSWKQKRKFLSDDIGQSPMVPTSDGDKVDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 271
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|1129993168|ref|XP_019711525.1| (PREDICTED: thyroid hormone receptor alpha isoform X10 [Hippocampus comes]) HSP 1 Score: 88.5817 bits (218), Expect = 9.925e-16 Identity = 65/215 (30.23%), Postives = 101/215 (46.98%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER--KRRY---QSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVCRQK----PDFIRQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + S C+IDK TR +CQ CRF+KC+ GM + VL D +R KRR + L R + D + + +M + A +QK PD I Q V + G D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 58 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPAYSC-KYESCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLIEENREKRKREELVRTMQVRPEPDTSEWELIRMATEAHRHTNAQGASWKQKRKFLPDDIGQGLVPTSEGDKVDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 269
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|657600356|gb|AID52839.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 90.1225 bits (222), Expect = 1.280e-15 Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0 Query: 37 VSSTSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQ 129 +S T K C VCG+ A H +YG C CRAFFRR +Q + + C C I +R+ CQ CR+ +CL +GMK TWVLS+ ER RR++ Sbjct: 82 ISDTEK-CRVCGEPAARHVHYGSVTCFSCRAFFRRSIQNKAWNNYSC-RRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFR 172
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|1067063843|ref|XP_018015851.1| (PREDICTED: vitamin D3 receptor B-like [Hyalella azteca]) HSP 1 Score: 90.1225 bits (222), Expect = 1.409e-15 Identity = 50/110 (45.45%), Postives = 64/110 (58.18%), Query Frame = 0 Query: 27 SHLDSDGSSSVSSTSKICLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER----KRRYQSH 131 SH S GS S +SKIC VCGD A +H +GG C C+AFFRR VQ + C N++C I K R+ CQ CRF KC +GMK++WV+++ ER K R H Sbjct: 8 SHKTSVGSGS---SSKICGVCGDAAKSMH--FGGMACDSCKAFFRRSVQGKCWVEFRC-PMNNSCSISKKNRKNCQYCRFSKCKQNGMKVSWVMTEAERMNLWKNRLSKH 111
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|1129993166|ref|XP_019711524.1| (PREDICTED: thyroid hormone receptor alpha isoform X9 [Hippocampus comes]) HSP 1 Score: 88.5817 bits (218), Expect = 1.548e-15 Identity = 65/215 (30.23%), Postives = 101/215 (46.98%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER--KRRY---QSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVCRQK----PDFIRQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + S C+IDK TR +CQ CRF+KC+ GM + VL D +R KRR + L R + D + + +M + A +QK PD I Q V + G D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 58 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPAYSC-KYESCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLIEENREKRKREELVRTMQVRPEPDTSEWELIRMATEAHRHTNAQGASWKQKRKFLPDDIGQGLVPTSEGDKVDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 269
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|1325279534|ref|XP_023324421.1| (uncharacterized protein LOC111698336, partial [Eurytemora affinis]) HSP 1 Score: 89.3521 bits (220), Expect = 1.563e-15 Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 0 Query: 37 VSSTSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKR 126 + T+K C VCGD+A H +YGG C CRAFFRR V L C + NC I+K TR+RCQ CRF KC GMK WVLS+ ++ + Sbjct: 20 IPKTAK-CHVCGDLAAEHLHYGGIACYSCRAFFRRTV-NSTRPMLDCSNGD-NCTINKETRKRCQSCRFDKCKAVGMKSLWVLSEDDKSK 106 The following BLAST results are available for this feature:
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of thyroid hormone receptor alpha 1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold28_size608977:174167..181796+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold28_size608977-processed-gene-1.5 ID=snap_masked-scaffold28_size608977-processed-gene-1.5|Name=thyroid hormone receptor alpha 1|organism=Tigriopus kingsejongensis|type=gene|length=7630bp|location=Sequence derived from alignment at scaffold28_size608977:174167..181796+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'thyroid hormone receptor alpha 1' has the following synonyms
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