retinoid x, snap_masked-scaffold296_size217904-processed-gene-1.3 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 106.686 bits (265), Expect = 2.876e-24 Identity = 74/257 (28.79%), Postives = 124/257 (48.25%), Query Frame = 0 Query: 64 VCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR-MERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQ---------VSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMI-VSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 VC +C + A H+HYG I CFSC+AFFRR++ HT + C+ + C + +RK+CQ CR+ CL GMK WVLS++E+ R + + + + + V + S Q +D L S+SS SS+ P + F E + I+N+ D + + E+++ E++ ++++ ++ ++ YR++ +RV K A D F K LL KN D M +L F++ Sbjct: 90 VCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPK--HTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRKNKTTCGKNVNNNNTIEVNLVSHLQSNSAVQDRLTLQSSSSSASSSASSSPAPISPYNIIHFHSLCFTTEEXRHIDNLIFAQDSTRNLIPMPELVMDEILEMTNISSLNMTSKGITEIYRVIYSRVAKFATYIDHFEELTSDDKKLLLSKNMDSMAILRTVVCFNK 344
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 97.0561 bits (240), Expect = 4.177e-21 Identity = 76/297 (25.59%), Postives = 132/297 (44.44%), Query Frame = 0 Query: 65 CRICQEPATRHLHYGSIVCFSCKAFFRRAI--QNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKE--------RVKRMERRQ------------------------SQGMESLPRQVGEACEATWS-RDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFF--SESAKEQIQVSMGEDDA 324 C IC + A H+HYG+I C SC+AFFRRA+ E H C+ + C + +RKHCQ CR++ CL GMK+ WV+S+ E R+K+++ +Q + M ++ + + +S +++ + E R+ H TS + + G+ SF+ E ++ + + + + L V +K + S N PI SLS Y V R+T + F + LL N D +V + A + + + EQ ++ G++++ Sbjct: 63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYH----CSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVMSESEKREKKEKIRLKKLKAQQLLDPENGVKKSSFTPEWDKMLFQNNSNMHNMGNSTYDMSFSIFSKKNTLNTFSEEYRNCY-GHYRTSHIIQDCFDSGM----SFNKMEIHLVQEMLYWEIESRKKIPLNSVNMKSFMEYSQLNEPIPFEISLSGYNTCVQRITMFMTKINFFAALSPEDQKKLLLNNVDMVVNIKTARYLHPNNNITEQFEIINGKNNS 350
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 90.5077 bits (223), Expect = 4.906e-19 Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0 Query: 62 PEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENR-CEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKER 144 P +C+IC E A +H++YG C SC+AFFRR++QN + F C + + C +N +RK CQ CR+ C+ GM+ WV +ER Sbjct: 104 PRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRER 187
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 90.1225 bits (222), Expect = 5.995e-19 Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 0 Query: 62 PEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENR-CEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKER 144 P +C+IC E A +H++YG C SC+AFFRR++QN + F+C + C +N +RK CQ CR+ C+ GM++ WVL ER Sbjct: 103 PRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGER 186
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 86.2705 bits (212), Expect = 1.217e-17 Identity = 43/121 (35.54%), Postives = 62/121 (51.24%), Query Frame = 0 Query: 31 VPMEADPKPAVSTSVKRGRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVEN-----RCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVK 146 VP+ P P++ + + +K P D VCRIC + A H HYG+I CFSC+AFF R + F C N +C + +R HCQ CR+ CL GM +V + +ER++ Sbjct: 106 VPLPESPIPSLIEVKEEPKKRKRRPEPMTD---VCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEERLQ 223
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53") HSP 1 Score: 81.2629 bits (199), Expect = 1.011e-15 Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 0 Query: 54 NPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGM 133 NP+ VC IC++ AT LHYG I C CK FF+R +QN+ ++TC + CE+N R CQ CR+ CL+ GM Sbjct: 272 NPSSQPQQSLVCMICEDRATG-LHYGIITCEGCKGFFKRTVQNK--RIYTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6") HSP 1 Score: 74.7146 bits (182), Expect = 6.081e-14 Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 E+C +C + + + HYG + C SCK FF+R +QN+ ++TC + C ++ RK C CR+ CL VGMK + V + R R Sbjct: 184 ELCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNK--KVYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGR 265
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10") HSP 1 Score: 73.559 bits (179), Expect = 1.283e-13 Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 0 Query: 65 CRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQGMESLP 160 C +C + A+ HYG C +CKAFF+R IQ + +T N CE+N RK CQ CR+ CLR+GM + V + +RV+ ++ + +ES P Sbjct: 271 CLVCGDIAS-GFHYGVSSCEACKAFFKRTIQGNIE--YTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGV--RLDRVRGGRQKYRRMIESSP 361
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0") HSP 1 Score: 68.1662 bits (165), Expect = 7.684e-12 Identity = 33/106 (31.13%), Postives = 59/106 (55.66%), Query Frame = 0 Query: 42 STSVKRGRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 S V+ R KK + + P + E+C +C + A+ + HY ++ C CK FFRR+I + +TC CE++ R+ CQ CR C GM+++ V+ ++ +++ Sbjct: 152 SQMVENERKKKGSSSRPAE--ELCLVCGDRASGY-HYNALACEGCKGFFRRSITKNSN--YTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQK 252
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13") HSP 1 Score: 67.781 bits (164), Expect = 9.255e-12 Identity = 30/94 (31.91%), Postives = 52/94 (55.32%), Query Frame = 0 Query: 65 CRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQGMES 158 C +C + AT HYG+ C CK FFRR+++ E ++ C C +N R +C+ CR C++ GMK V ++++R+ ++ ++ M S Sbjct: 151 CAVCGDRATGK-HYGAASCDGCKGFFRRSVRKE--RVYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRISCRKKTSAKDMNS 241
BLAST of retinoid x vs. SwissProt
Match: gi|114152848|sp|Q94407.3|NHR48_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-48) HSP 1 Score: 93.9745 bits (232), Expect = 3.440e-18 Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMER----RQSQGMESLPRQVGEACEATWSRDSEDQ 178 +VCR+C + A + ++ I C SCKAFFRR E C +CE+N VSR+ CQ+CR C VGMK +W++S++ R+++ +R R+ + +++ R + EAC S +S D+ Sbjct: 98 KVCRVCGDKAFSY-NFNVITCESCKAFFRRNANKEKE--IRCPFNEQCEINMVSRRFCQRCRLTKCFAVGMKKEWIMSEEARLEKKQRVEENRERRLQDAMNRALEEACMEDESENSYDE 214
BLAST of retinoid x vs. SwissProt
Match: gi|56405103|sp|P68305.1|THB_CAIMO (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2 >gi|56405104|sp|P68306.1|THB_CHICK RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 85.8853 bits (211), Expect = 1.899e-16 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 9 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAK 96
BLAST of retinoid x vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A) HSP 1 Score: 84.3445 bits (207), Expect = 6.715e-16 Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERV--------KRMERRQSQGMESL 159 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ R +RR+ + +SL Sbjct: 13 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSL 120
BLAST of retinoid x vs. SwissProt
Match: gi|3915110|sp|Q28571.1|THB_SHEEP (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 84.3445 bits (207), Expect = 1.042e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 99 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 186
BLAST of retinoid x vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 83.5741 bits (205), Expect = 1.117e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 13 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAK 100
BLAST of retinoid x vs. SwissProt
Match: gi|939319623|sp|G5EFF5.1|DAF12_CAEEL (RecName: Full=Nuclear hormone receptor family member daf-12; AltName: Full=Abnormal dauer formation protein 12) HSP 1 Score: 85.5001 bits (210), Expect = 1.152e-15 Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERR 151 + CR+C + AT + ++ I C SCKAFFRR F C CE+NSVSR+ CQKCR C VGMK +W+L++++ +R R Sbjct: 116 KTCRVCGDHATGY-NFNVITCESCKAFFRRNALRPKE--FKCPYSEDCEINSVSRRFCQKCRLRKCFTVGMKKEWILNEEQLRRRKNSR 201
BLAST of retinoid x vs. SwissProt
Match: gi|586094|sp|P18113.2|THB_RAT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 83.9593 bits (206), Expect = 1.653e-15 Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 0 Query: 25 IVHADRVPMEADPKPAVSTSVKRGRPKKLNPTGP--VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 I H D P + + + S + KK P +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 67 IFHLD--PDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 188
BLAST of retinoid x vs. SwissProt
Match: gi|586093|sp|P37242.1|THB_MOUSE (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 83.9593 bits (206), Expect = 1.991e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 101 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 188
BLAST of retinoid x vs. SwissProt
Match: gi|586092|sp|P10828.2|THB_HUMAN (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 83.5741 bits (205), Expect = 2.377e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 101 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 188
BLAST of retinoid x vs. SwissProt
Match: gi|6093487|sp|Q25604.1|NHR1_ONCVO (RecName: Full=Nuclear hormone receptor-like 1) HSP 1 Score: 82.0333 bits (201), Expect = 3.157e-15 Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 0 Query: 50 PKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR----MERRQSQGMESL 159 P+ + P P C +C + AT LHY +I C CK FFRR +Q ++ ++ C RCE++ +SR CQ CR+ CLR GM VL++ ER+ + ++ R+ + +E L Sbjct: 26 PRYMKPGQP------CVVCGDDAT-GLHYRAITCEGCKGFFRRTVQQKI--VYKCKSIERCEISKISRNICQFCRFQKCLRNGMTKSLVLNETERIAKRKMIIDNRERRKLEHL 130
BLAST of retinoid x vs. nr
Match: gi|1238862943|ref|XP_022247717.1| (nuclear hormone receptor HR96-like isoform X2 [Limulus polyphemus] >gi|1238862945|ref|XP_022247718.1| nuclear hormone receptor HR96-like isoform X2 [Limulus polyphemus]) HSP 1 Score: 106.686 bits (265), Expect = 1.961e-20 Identity = 67/251 (26.69%), Postives = 113/251 (45.02%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERV----KRMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 +VC +C + A + H+G I C SCKAFFRR++QNE + F C E +CE+ SRK CQ CR+ C+ +GM+ WV++++ER+ RMER+Q QG + + + + D D + + + + S IE + Y+ ++++S E + + S + L + ++ + + A + + F P R + LL+ M L GA F E Sbjct: 27 KVCGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEGYKNFHCPYEGKCEITLSSRKCCQYCRFQKCVSIGMEKGWVMTEEERMHLLRSRMERKQRQGTSEPDKPPQKVSISDYDPDINDVGKYLTENDVRS-----------------------------IEILINAYEISYQTISFSEKLTPQTSERSRTEI-------LDMFFTVIKQFSHFAQNLECFSYIPQRDQEVLLRSGVMEMCFLRGAYVFDE 240
BLAST of retinoid x vs. nr
Match: gi|1192756029|ref|XP_015919168.2| (nuclear receptor subfamily 1 group D member 1 [Parasteatoda tepidariorum]) HSP 1 Score: 106.301 bits (264), Expect = 3.462e-20 Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERV----KRMERRQSQGMESLPRQVGEACEATW 171 +VC C + A + H+G I C SCKAFFRR++QNE F C E +CE+ SRK CQ CR+ CL +GM++ WV++++ER+ RMER+Q QG + QV E+ + + Sbjct: 38 KVCGACGDRAKSY-HFGGISCDSCKAFFRRSVQNEAFKNFHCPYEGKCEITITSRKCCQYCRFKKCLSIGMETGWVMTEEERLALVKNRMERKQRQGTQEFTTQVQESSKKAY 149
BLAST of retinoid x vs. nr
Match: gi|728054567|gb|AIY67763.1| (HR97a-like receptor 4 [Tigriopus japonicus]) HSP 1 Score: 104.375 bits (259), Expect = 1.076e-19 Identity = 42/104 (40.38%), Postives = 68/104 (65.38%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQGMESLPRQ 162 + P +C +C PA +H +YG VC SC+AFFRR+IQN+ H ++ C + C ++S SRK C CR+ CL GM +W+++ +ER ++E +QS+ M++ +Q Sbjct: 65 IQCPRLCHVCNLPAGKHNYYGGQVCESCRAFFRRSIQNQTHPIYHCKAKKCCIIDSKSRKSCAWCRFQKCLLAGMNPKWIITDQERKFKLEAKQSKIMKAKMKQ 168
BLAST of retinoid x vs. nr
Match: gi|1316160164|ref|XP_023225256.1| (thyroid hormone receptor beta-like isoform X3 [Centruroides sculpturatus]) HSP 1 Score: 104.375 bits (259), Expect = 1.262e-19 Identity = 70/252 (27.78%), Postives = 116/252 (46.03%), Query Frame = 0 Query: 62 PEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVK----RMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 P+VC +C + A + H+G I C SCKAFFRR++QNE + F C E +CE+ SRK CQ CR+ C+ +GM+ WV++++ER++ RME+RQ RQ A E D+ R+ +E + + K +S D + IE + Y+ +R +S + + I + + L + ++ + A D+F P + LL+ + + GA + E Sbjct: 26 PKVCGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEAYKNFHCPYEGKCEITISSRKCCQYCRFQKCVSIGMEKGWVMTEEERMQLLRSRMEKRQ--------RQEAAAAEG-------DRMRQRRLSIVEYEPDVNE---------LSKYLSEDDV--RTIEILVNSYEMSYRDISFSDQLQNRSIERTRTEI-------LDMFFTVIKQFAHFAQRLDSFSKIPQAEQEVLLRTGVLELCFIRGAYAYDE 243
BLAST of retinoid x vs. nr
Match: gi|1316160162|ref|XP_023225254.1| (thyroid hormone receptor beta-like isoform X2 [Centruroides sculpturatus]) HSP 1 Score: 104.76 bits (260), Expect = 1.352e-19 Identity = 70/252 (27.78%), Postives = 115/252 (45.63%), Query Frame = 0 Query: 62 PEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVK----RMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 P+VC +C + A + H+G I C SCKAFFRR++QNE + F C E +CE+ SRK CQ CR+ C+ +GM+ WV++++ER++ RME+RQ RQ A E D+ R+ +E + + K +S D IE + Y+ +R +S + + I + + L + ++ + A D+F P + LL+ + + GA + E Sbjct: 48 PKVCGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEAYKNFHCPYEGKCEITISSRKCCQYCRFQKCVSIGMEKGWVMTEEERMQLLRSRMEKRQ--------RQEAAAAEG-------DRMRQRRLSIVEYEPDVNE---------LSKYLSEDDVRT--IEILVNSYEMSYRDISFSDQLQNRSIERTRTEI-------LDMFFTVIKQFAHFAQRLDSFSKIPQAEQEVLLRTGVLELCFIRGAYAYDE 265
BLAST of retinoid x vs. nr
Match: gi|1316160160|ref|XP_023225253.1| (thyroid hormone receptor beta-like isoform X1 [Centruroides sculpturatus]) HSP 1 Score: 103.99 bits (258), Expect = 2.123e-19 Identity = 70/252 (27.78%), Postives = 115/252 (45.63%), Query Frame = 0 Query: 62 PEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVK----RMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 P+VC +C + A + H+G I C SCKAFFRR++QNE + F C E +CE+ SRK CQ CR+ C+ +GM+ WV++++ER++ RME+RQ RQ A E D+ R+ +E + + K +S D IE + Y+ +R +S + + I + + L + ++ + A D+F P + LL+ + + GA + E Sbjct: 50 PKVCGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEAYKNFHCPYEGKCEITISSRKCCQYCRFQKCVSIGMEKGWVMTEEERMQLLRSRMEKRQ--------RQEAAAAEG-------DRMRQRRLSIVEYEPDVNE---------LSKYLSEDDVRT--IEILVNSYEMSYRDISFSDQLQNRSIERTRTEI-------LDMFFTVIKQFAHFAQRLDSFSKIPQAEQEVLLRTGVLELCFIRGAYAYDE 267
BLAST of retinoid x vs. nr
Match: gi|1325280017|ref|XP_023324670.1| (uncharacterized protein LOC111698547 [Eurytemora affinis]) HSP 1 Score: 103.219 bits (256), Expect = 5.619e-19 Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 0 Query: 64 VCRICQEPATRHLHYGSIVCFSCKAFFRRAI--QNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQG 155 +CRIC + A RH+HYG CFSCKAFFRRA+ Q + F C E+ CE+N +RK CQ CR+ C+ GM WVLS +R KR ++ + G Sbjct: 40 LCRICGDGAVRHVHYGGHCCFSCKAFFRRAVNWQTKNKRTFQCKFESGCEINIKNRKTCQSCRFQKCITTGMNPSWVLSDDQRKKRFKKYRETG 133
BLAST of retinoid x vs. nr
Match: gi|657600364|gb|AID52843.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 102.449 bits (254), Expect = 6.541e-19 Identity = 96/402 (23.88%), Postives = 180/402 (44.78%), Query Frame = 0 Query: 65 CRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKER--------VKRMERRQS-QGMESLPRQVGEAC-------EATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPK--------QVSFD--------------PTEDQ--FIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSESAKEQIQVSMGEDDALSSGILIDRSKEAIDKA-GSISYWNWNTIQTYHSPDVEDVFSNQLKRLGTL-LERNPVLLKLILTWSGSSLASLVKDFLASNQVSSPYSKIDGENYEYAYNI 424 C +C + A H+HYG+I C+SC+AFFRR++ NE H + C+ ++C + +RKHCQ CR+ C+ +GMK WV+++ ER K+ME R+ + + C +++ S ++ P +T + E+ + +SS GI K Q+ ++ PT D+ F+E++ R + + + + + + S+ + I + + + V R++K + D F + + LL+ N +V L A + Q Q+ L++G + +AI + ++Y + S D E+ + + L L ++ +L +I+T LA ++ + SNQVSS S Y++ Y++ Sbjct: 60 CSVCGDIANDHVHYGAIACYSCRAFFRRSVSNEAH--YECSRNSKCPVTKETRKHCQSCRFKKCIDIGMKPSWVMTEDERKDNRAKILKKKMELRKGLRRSSDSRTSISSDCAKNPEHDDSSLSPENGFMPDQTFKSEDETEDESIVSESS----GIDKKEIIPYGLQMGYEHWDPHGNDVTLQSIPTLDEKTFLEDLVLKEAACRREIPIRQETLIKFMESAKHETIIPYDACVDGFSTCVQRISKFMSRLDFFSSLMWSDQQILLRCNTHMVVNLKSARMLKPTNSLQGQL------CLTNGT---QPNQAISASPNRLTYSQFFNSPWCCSADKEEEYKKLMDELFNLDMDDVTSVLMMIMTM----LAPPTEELIQSNQVSSRRSYFSQLLYKHLYSV 442
BLAST of retinoid x vs. nr
Match: gi|1325265241|ref|XP_023336689.1| (oxysterols receptor LXR-alpha-like [Eurytemora affinis]) HSP 1 Score: 103.605 bits (257), Expect = 7.837e-19 Identity = 56/164 (34.15%), Postives = 91/164 (55.49%), Query Frame = 0 Query: 7 ESRRHSCIVWNIKEQSEHIVHADRVPMEADPKPAVSTSVKRGRPKKLNPTGPVDYPE---------VCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENR---CEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRME-RRQSQGME 157 E ++ + I+ + K++ ++V P+E D + +K KK +P P VC++C E A +H +YG VC SC+AFFRR++Q+ +T F C NR C +N ++RK+CQ CR+ CL GM+ W+LS++ER++R R + +G E Sbjct: 119 EPKKQNFIILS-KQEKPNLVVVKEEPIEKDSYSNLGIKIKE-EGKKSSPVSPFKRERSSRILCENPVCQVCGEKAGKHSYYGGQVCPSCRAFFRRSVQSRCYTGFRCI--NRSESCPINLLTRKNCQYCRYHKCLSCGMRPSWILSEEERIRRFHGRTKGKGKE 278
BLAST of retinoid x vs. nr
Match: gi|240978500|ref|XP_002402961.1| (retinoid X receptor, putative [Ixodes scapularis] >gi|215491252|gb|EEC00893.1| retinoid X receptor, putative, partial [Ixodes scapularis]) HSP 1 Score: 100.523 bits (249), Expect = 1.155e-18 Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0 Query: 58 PVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQS 153 P VC +C + A + H+G I C SCKAFFRR++QNE FTC + RC + SRK CQ CR+ CL +GM++ WV+S++ER RM++RQ+ Sbjct: 83 PCPAARVCGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEAR--FTCPYQGRCHITLTSRKSCQACRFAKCLSIGMEASWVMSEQERRARMQQRQA 175 The following BLAST results are available for this feature:
BLAST of retinoid x vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 23
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BLAST of retinoid x vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of retinoid x vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold296_size217904:69141..102945- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold296_size217904-processed-gene-1.3 ID=snap_masked-scaffold296_size217904-processed-gene-1.3|Name=retinoid x|organism=Tigriopus kingsejongensis|type=gene|length=33805bp|location=Sequence derived from alignment at scaffold296_size217904:69141..102945- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'retinoid x' has the following synonyms
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