unknown, snap_masked-scaffold347_size200506-processed-gene-1.0 (gene) Tigriopus kingsejongensis

Overview


Name	unknown
Unique Name	snap_masked-scaffold347_size200506-processed-gene-1.0
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of unknown vs. L. salmonis genes
Match: EMLSAG00000001795 (supercontig:LSalAtl2s:LSalAtl2s1306:48190:49688:1 gene:EMLSAG00000001795 transcript:EMLSAT00000001795 description:"maker-LSalAtl2s1306-augustus-gene-0.33")

HSP 1 Score: 152.525 bits (384), Expect = 2.853e-48
Identity = 95/124 (76.61%), Postives = 103/124 (83.06%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKGGGRGGGRGRGGPRGRGGFGGGGRGGGRGGPGGGGGRG 124
            MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDN MNI+L+EVICTS+DGDRFWRM ECY+RGSTIKYLRIPD+V++MVK+DV  KG GR GGRGRG         GG   GGRG   GGGGRG
Sbjct:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNRMNISLKEVICTSRDGDRFWRMQECYIRGSTIKYLRIPDDVIEMVKDDVMTKGSGRVGGRGRGR--------GGFNVGGRGRNRGGGGRG 116

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BLAST of unknown vs. L. salmonis genes
Match: EMLSAG00000004431 (supercontig:LSalAtl2s:LSalAtl2s231:23735:24214:-1 gene:EMLSAG00000004431 transcript:EMLSAT00000004431 description:"maker-LSalAtl2s231-augustus-gene-0.34")

HSP 1 Score: 62.7734 bits (151), Expect = 2.852e-13
Identity = 41/128 (32.03%), Postives = 61/128 (47.66%), Query Frame = 0

Query:    2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKGGGRGGGRGRGGPRGRGGF--GGGGRGGGRGGPGGGGGRGGGG 127
            +P+ +L  A+ H +  E  NGE Y G L+  ++ MN  +  V  T +DG    ++   Y+RGS I+++ +PD + +       N G GRG      G RG+         RG GR GP G  G    G
Sbjct:    5 VPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGH-VSQLENIYIRGSKIRFMILPDMLKN--APMFKNMGRGRGSAPAXAG-RGKXAILREQAARGRGRAGPPGLPGSAASG 128

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BLAST of unknown vs. L. salmonis genes
Match: EMLSAG00000012571 (supercontig:LSalAtl2s:LSalAtl2s933:107707:108795:-1 gene:EMLSAG00000012571 transcript:EMLSAT00000012571 description:"maker-LSalAtl2s933-snap-gene-0.20")

HSP 1 Score: 50.0618 bits (118), Expect = 5.309e-8
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRM---PECYVRGSTIKYLRIPDEVLD 77
            ML  S  ++     ++VELKN  +  G L S D ++NI L +V  T  D D++  M     C++RGS ++Y+++P E +D
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDVSVT--DPDKYPHMLSVKNCFIRGSVVRYVQLPHEEVD 78

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BLAST of unknown vs. SwissProt
Match: gi|10720074|sp|Q9QXA5.1|LSM4_MOUSE (RecName: Full=U6 snRNA-associated Sm-like protein LSm4)

HSP 1 Score: 181.415 bits (459), Expect = 4.994e-58
Identity = 81/102 (79.41%), Postives = 92/102 (90.20%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKGGGRGGGRGRGGPRGR 102
            MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDE++DMV+E+ +        GRGRGGP+ +
Sbjct:    1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVREEAAK-------GRGRGGPQQK 95

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BLAST of unknown vs. SwissProt
Match: gi|10720082|sp|Q9Y4Z0.1|LSM4_HUMAN (RecName: Full=U6 snRNA-associated Sm-like protein LSm4; AltName: Full=Glycine-rich protein; Short=GRP >gi|109892572|sp|Q3ZBK6.1|LSM4_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm4)

HSP 1 Score: 178.718 bits (452), Expect = 5.895e-57
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKG 87
            MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDE++DMVKE+V  KG
Sbjct:    1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAKG 87

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BLAST of unknown vs. SwissProt
Match: gi|12230258|sp|Q43582.1|LSM4_TOBAC (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4; AltName: Full=Glycine-rich protein 10; Short=GRP 10)

HSP 1 Score: 170.629 bits (431), Expect = 1.476e-53
Identity = 84/119 (70.59%), Postives = 94/119 (78.99%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSN----KGGGRGGGRGRGGPRGRGGFGGGGRGGGRG 115
            MLPLSLL+TAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTSKDGDRFWRMPECYVRG+TIKYLR+PDEV+D V+E+  +    K  G G  R RGG R     G   +G GRG
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGG-RDDSAVGRQPKGIGRG 118

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BLAST of unknown vs. SwissProt
Match: gi|12230291|sp|Q9LGE6.1|LSM4_ORYSJ (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4)

HSP 1 Score: 163.31 bits (412), Expect = 8.553e-51
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVS-NKGGGRGGGRGRGGPRGRGGFGGGGRGGGRG 115
            MLPLSLL+TAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTSKDGD+FWRMPECY+RG+TIKYLR+PDEV+D V+E+ S ++   R  G GRG  RG  G   GGRG GRG
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGRGIGRG 116

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BLAST of unknown vs. SwissProt
Match: gi|745998020|sp|F4K4E3.1|LSM4_ARATH (RecName: Full=Sm-like protein LSM4; Short=AtLSM4; AltName: Full=Protein EMBRYO DEFECTIVE 1644; AltName: Full=U6 snRNA-associated Sm-like protein LSM4)

HSP 1 Score: 161.384 bits (407), Expect = 3.661e-50
Identity = 70/82 (85.37%), Postives = 79/82 (96.34%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKED 82
            MLPLSLL+TAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTSKDGDRFWRMPECY+RG+TIKYLR+PDEV+D V+E+
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEE 82

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BLAST of unknown vs. SwissProt
Match: gi|12230329|sp|Q9ZRU9.1|LSM4_FAGSY (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4; AltName: Full=Glycine-rich protein 2)

HSP 1 Score: 161.384 bits (407), Expect = 6.221e-50
Identity = 68/87 (78.16%), Postives = 81/87 (93.10%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKG 87
            MLPLSLL+TAQ HPMLVELK+GETYNGHLV+CD WMNI+LREVICTSKDGDRFWRMP+CY+RG+TIKYLR+PDEV+D V+E+  ++ 
Sbjct:    1 MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTIKYLRVPDEVIDKVQEETKSRA 87

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BLAST of unknown vs. SwissProt
Match: gi|74853183|sp|Q54KX4.1|LSM4_DICDI (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4)

HSP 1 Score: 142.895 bits (359), Expect = 2.615e-42
Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDV------------SNKGGGRG---GGRGRGGPRGRG 103
            MLPLSLLRT Q H ++VELKNGETYNG LV+CDNWMNINL+ VI TSKD D+FW++  CY+RG+TIKY+ +PDE++D+V E+             SN+G GRG    GRGRG   GRG
Sbjct:    1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRGDASGRG 118

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BLAST of unknown vs. SwissProt
Match: gi|12230257|sp|Q19952.1|LSM4_CAEEL (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4)

HSP 1 Score: 132.88 bits (333), Expect = 3.902e-39
Identity = 83/130 (63.85%), Postives = 99/130 (76.15%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKGGGRGGGRGRGGPRGRGGFGGGGRGGGRGGPGGGGGRGGGGGAR 130
            +LPLSLL+TAQNHPMLVELKNGETYNGHL +CD+WMNI+L +VI TSKDGD+F++M E YVRGSTIKYLRIP+ V+D+VK +V+     +   + RG         GGGRGG  G  GGGG RGG GGAR
Sbjct:    2 VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPETVVDLVKTEVNEVRRQQQREQSRGR--------GGGRGGRGGHRGGGGNRGGRGGAR 123

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BLAST of unknown vs. SwissProt
Match: gi|12230213|sp|O14352.1|LSM4_SCHPO (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4)

HSP 1 Score: 122.479 bits (306), Expect = 4.622e-35
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMV 79
            MLPL+LL   Q  P+LVELKNGET+NGHL +CDN+MN+ LREVI T  DGD+F+R+PECY+RG+ IKYLRI DEVL  V
Sbjct:    1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQV 79

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BLAST of unknown vs. SwissProt
Match: gi|731503|sp|P40070.1|LSM4_YEAST (RecName: Full=U6 snRNA-associated Sm-like protein LSm4)

HSP 1 Score: 72.0182 bits (175), Expect = 7.869e-15
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSK----------DGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDV 83
            MLPL LL  A+   M +ELKNGE   G L + DNWMN+ L  V   S+          +  +  ++ E Y+RG+ IK++++ D ++D VK+ +
Sbjct:    1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIRGTFIKFIKLQDNIIDKVKQQI 93

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BLAST of unknown vs. nr
Match: gi|1080059804|ref|XP_018571807.1| (U6 snRNA-associated Sm-like protein LSm4 [Anoplophora glabripennis])

HSP 1 Score: 193.741 bits (491), Expect = 2.124e-60
Identity = 96/124 (77.42%), Postives = 104/124 (83.87%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKED--VSNKG-----GGRGGGRGRGGPRGRGGFGG-GGRGGGRGG 116
            MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDEV+DMVKE+  V N+G     GGR G   R  P  RG FGG  G+ GG+GG
Sbjct:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETVVKNRGRTDVKGGRSGQNQRNRPAARGNFGGRAGKAGGQGG 124

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BLAST of unknown vs. nr
Match: gi|1130253943|ref|XP_019767375.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Dendroctonus ponderosae] >gi|332376551|gb|AEE63415.1| unknown [Dendroctonus ponderosae])

HSP 1 Score: 192.586 bits (488), Expect = 6.484e-60
Identity = 90/114 (78.95%), Postives = 95/114 (83.33%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKG-------GGRGGGRGRGGPRGRGGFGG 107
            MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDEV+DMVKE+   K        GGRGG   R  P  RG FGG
Sbjct:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETVTKNKQSRDQKGGRGGQNQRNRPAARGNFGG 114

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BLAST of unknown vs. nr
Match: gi|952511797|gb|KRT78634.1| (hypothetical protein AMK59_7949, partial [Oryctes borbonicus])

HSP 1 Score: 191.43 bits (485), Expect = 1.343e-59
Identity = 96/124 (77.42%), Postives = 102/124 (82.26%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKED--VSNKG----GGRGGGRGRGGPRGRGGFGGGGRGGGRGGPG 118
            MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDEV+DMVKE+  V N+G    GGRGG   R  P  RG F GG RG   G  G
Sbjct:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETAVKNRGRENKGGRGGQNQRNRPAARGNF-GGNRGAKSGNIG 123

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BLAST of unknown vs. nr
Match: gi|642924778|ref|XP_008194436.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Tribolium castaneum] >gi|1004399778|gb|EFA04447.2| Small nuclear ribonucleoprotein Sm D3-like Protein [Tribolium castaneum])

HSP 1 Score: 191.43 bits (485), Expect = 1.557e-59
Identity = 98/129 (75.97%), Postives = 104/129 (80.62%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKED--VSNKG----GGRGGGRGRGGPRGRGGFGGGGRGGGRGGPGGGGGR 123
            MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDEV+DMVKE+  V N+G    GGRGG   R  P  RG F      GGR G  G GGR
Sbjct:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEEAVVKNRGRDMKGGRGGQNQRNRPAARGNF------GGRTGKPGQGGR 123

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BLAST of unknown vs. nr
Match: gi|1344792668|ref|XP_023938446.1| (U6 snRNA-associated Sm-like protein LSm4 [Bicyclus anynana])

HSP 1 Score: 191.43 bits (485), Expect = 2.110e-59
Identity = 100/132 (75.76%), Postives = 105/132 (79.55%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKGGGRGG-GRGRGGPRGRGGFGGG-GRGGGRGGPGGGGGRGGGGGAR 130
            MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDEV+DMVKED   K  GRG   +GRGG   R G GG  G  G RG P     RGGG   R
Sbjct:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEDTQAKTRGRGDMNKGRGGQNMRSGRGGSRGAFGNRGRP-APLSRGGGNAGR 131

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BLAST of unknown vs. nr
Match: gi|1209696096|gb|OWR48608.1| (hypothetical protein KGM_212308 [Danaus plexippus plexippus])

HSP 1 Score: 190.274 bits (482), Expect = 4.586e-59
Identity = 96/131 (73.28%), Postives = 102/131 (77.86%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKGGGRGG-GRGRGGPRGRGGFGGGGRGGGRGGPGGGGGRGGGGGAR 130
            MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDEV+DMVKE+   K  GRG   +GRGG   R G GG     G  G      RGGG   R
Sbjct:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETQVKSRGRGEISKGRGGQNMRSGRGGSRGAFGNRGRAAPLSRGGGNAGR 131

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BLAST of unknown vs. nr
Match: gi|1018646328|gb|AMY63174.1| (U6 snRNA-associated Sm-like protein LSm4 [Antheraea yamamai])

HSP 1 Score: 189.889 bits (481), Expect = 6.953e-59
Identity = 98/132 (74.24%), Postives = 104/132 (78.79%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKGGGRG-GGRGRGGPRGRGGFGGG-GRGGGRGGPGGGGGRGGGGGAR 130
            MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDEV+DMVKE+   K  GR    +GRGG   R G GG  G  G RG P       GGG AR
Sbjct:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETQVKARGRSEASKGRGGQNMRTGRGGSRGAFGNRGRPAPLA--RGGGNAR 130

[Close]

BLAST of unknown vs. nr
Match: gi|1069811284|ref|XP_018329360.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm4, partial [Agrilus planipennis])

HSP 1 Score: 189.119 bits (479), Expect = 6.958e-59
Identity = 89/116 (76.72%), Postives = 96/116 (82.76%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKGGGRGGGRG---RGGPRGRGGFGGGGRGGG 113
            MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDE++DMVKE+ + K  GR    G   RG P  RG FG  G   G
Sbjct:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEATIKNRGRDNKTGKNQRGRPATRGNFGSRGAKSG 116

[Close]

BLAST of unknown vs. nr
Match: gi|961827259|ref|XP_014883744.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Poecilia latipinna])

HSP 1 Score: 191.43 bits (485), Expect = 8.022e-59
Identity = 88/106 (83.02%), Postives = 97/106 (91.51%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKGGGRGG-------GRGRGGP 99
            MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDE++DMVKE+V +KG GRGG       G+GRGGP
Sbjct:   46 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQQGKGRGGP 151

[Close]

BLAST of unknown vs. nr
Match: gi|1101340543|ref|XP_018895834.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Bemisia tabaci])

HSP 1 Score: 189.889 bits (481), Expect = 8.095e-59
Identity = 87/105 (82.86%), Postives = 94/105 (89.52%), Query Frame = 0

Query:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPDEVLDMVKEDVSNKGGGRGGGR-GRGGPRGRGG 104
            MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS+DGD+FWRMPECY+RGSTIKYLRIPDE++DMVKED+  K  GR   +  RGG RGRG 
Sbjct:    1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEDLVVKAKGRRDAKTARGGQRGRGA 105

The following BLAST results are available for this feature:

BLAST of unknown vs. L. salmonis genes
BLAST of unknown vs. SwissProt
BLAST of unknown vs. nr

BLAST of unknown vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 3


Match Name	E-value	Identity	Description
EMLSAG00000001795	2.853e-48	76.61	supercontig:LSalAtl2s:LSalAtl2s1306:48190:49688:1 ...	[more]
EMLSAG00000004431	2.852e-13	32.03	supercontig:LSalAtl2s:LSalAtl2s231:23735:24214:-1 ...	[more]
EMLSAG00000012571	5.309e-8	35.00	supercontig:LSalAtl2s:LSalAtl2s933:107707:108795:-...	[more]

BLAST of unknown vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 17


Match Name	E-value	Identity	Description
gi\|10720074\|sp\|Q9QXA5.1\|LSM4_MOUSE	4.994e-58	79.41	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|10720082\|sp\|Q9Y4Z0.1\|LSM4_HUMAN	5.895e-57	89.66	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|12230258\|sp\|Q43582.1\|LSM4_TOBAC	1.476e-53	70.59	RecName: Full=Probable U6 snRNA-associated Sm-like...	[more]
gi\|12230291\|sp\|Q9LGE6.1\|LSM4_ORYSJ	8.553e-51	73.28	RecName: Full=Probable U6 snRNA-associated Sm-like...	[more]
gi\|745998020\|sp\|F4K4E3.1\|LSM4_ARATH	3.661e-50	85.37	RecName: Full=Sm-like protein LSM4; Short=AtLSM4; ...	[more]
gi\|12230329\|sp\|Q9ZRU9.1\|LSM4_FAGSY	6.221e-50	78.16	RecName: Full=Probable U6 snRNA-associated Sm-like...	[more]
gi\|74853183\|sp\|Q54KX4.1\|LSM4_DICDI	2.615e-42	59.32	RecName: Full=Probable U6 snRNA-associated Sm-like...	[more]
gi\|12230257\|sp\|Q19952.1\|LSM4_CAEEL	3.902e-39	63.85	RecName: Full=Probable U6 snRNA-associated Sm-like...	[more]
gi\|12230213\|sp\|O14352.1\|LSM4_SCHPO	4.622e-35	68.35	RecName: Full=Probable U6 snRNA-associated Sm-like...	[more]
gi\|731503\|sp\|P40070.1\|LSM4_YEAST	7.869e-15	36.56	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]

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BLAST of unknown vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1080059804\|ref\|XP_018571807.1\|	2.124e-60	77.42	U6 snRNA-associated Sm-like protein LSm4 [Anoploph...	[more]
gi\|1130253943\|ref\|XP_019767375.1\|	6.484e-60	78.95	PREDICTED: U6 snRNA-associated Sm-like protein LSm...	[more]
gi\|952511797\|gb\|KRT78634.1\|	1.343e-59	77.42	hypothetical protein AMK59_7949, partial [Oryctes ...	[more]
gi\|642924778\|ref\|XP_008194436.1\|	1.557e-59	75.97	PREDICTED: U6 snRNA-associated Sm-like protein LSm...	[more]
gi\|1344792668\|ref\|XP_023938446.1\|	2.110e-59	75.76	U6 snRNA-associated Sm-like protein LSm4 [Bicyclus...	[more]
gi\|1209696096\|gb\|OWR48608.1\|	4.586e-59	73.28	hypothetical protein KGM_212308 [Danaus plexippus ...	[more]
gi\|1018646328\|gb\|AMY63174.1\|	6.953e-59	74.24	U6 snRNA-associated Sm-like protein LSm4 [Antherae...	[more]
gi\|1069811284\|ref\|XP_018329360.1\|	6.958e-59	76.72	PREDICTED: U6 snRNA-associated Sm-like protein LSm...	[more]
gi\|961827259\|ref\|XP_014883744.1\|	8.022e-59	83.02	PREDICTED: U6 snRNA-associated Sm-like protein LSm...	[more]
gi\|1101340543\|ref\|XP_018895834.1\|	8.095e-59	82.86	PREDICTED: U6 snRNA-associated Sm-like protein LSm...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold347_size200506	supercontig	scaffold347_size200506:87687..93479 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold347_size200506-processed-gene-1.0-mRNA-1	snap_masked-scaffold347_size200506-processed-gene-1.0-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold347_size200506:87687..93479+

gene from alignment at scaffold347_size200506:87687..93479+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold347_size200506-processed-gene-1.0 ID=snap_masked-scaffold347_size200506-processed-gene-1.0|Name=unknown|organism=Tigriopus kingsejongensis|type=gene|length=5793bp|location=Sequence derived from alignment at scaffold347_size200506:87687..93479+ (Tigriopus kingsejongensis)
ATGCTGCCCCTGTCCCTCCTCCGCACGGCTCAGAACCACCCCATGTTGGT
GGAGCTGAAGAATGGCGAGACCTACAACGGGCATTTGGTGTCCTGCGACA
ACTGGATGAACATTAACCTGCGCGAAGTGATCTGCACCTCCAAGGACGGC
GACCGATTCTGGCGGATGCCCGAATGCTACGTGCGAGGATCCACTATCAA
ATATCTCCGCATTCCCGATGAAGTCCTAGACATGGTCAAGGAGGACGTGT
CCAACAAGGGAGGCGGACGAGGCGGTGGTCGCGGACGGGGCGGTCCCCGT
GGGCGCGGTGGCTTCGGTGGTGGCGGTCGAGGTGGGGGTCGCGGTGGACC
CGGAGGTGGTGGCGGCCGTGGCGGCGGCGGGGGCGCCCGAGGCGGGGGTG
GAGGTCGGGGAGCAAAATACTAGGATCATTATCTTACAACCCTAGGTTTC
CCCTCCATGTATTATGTTCCGTTCCCCTGTTGAAATACAATATCAGCCGC
GTATTCATTTTTCGTTGCCCCGTTCGATTCGGGCTCTCGGAGCCCATCGC
CAACTTCGAACCCAAGCGGGCCTCTGATTTGATGAGAAGCCATCCCCTCA
AATGTTCCCGGGTCGTTGGTCCAGCCAGCCCATGTGGTTCCGGAATCCCC
AAGCAATATTTTGGCGTGTGACCCTGGGAAGATATGGACGGGTTGGGGAA
ATAATTCCGTGTTTAGTCGGTATCGAGTTTCAGACAACCATACCTGAAGC
AACGGGGAAACCCAATTAGAACCATGGGGAGTGCTGGCAAACATTTATAA
CTTTTAAGGGTGTATTAACCTTGAGCTGGAGCGACTTCGGCTTGCCACGA
ACTCCTGAACCAAGGATATCCTTGCCTGAACTGCTCGGTTCATGAAGTGG
AATCGGTGAGCGCTTCTTAGTTTTCGTCGGACGAAAAAGTGGGCAAAGTT
GGTTTTATTAACCGACTCTGTTTTACATGATCACGGGGAGGTTTCTCAAC
TATCTGCTCTTACTGGAATAAATTCCTTGGTAATGATCAATGAGAAGCTG
GATATTTGTAAGCTAGTCATTTTCTGTTCACGGTCACGCGCTTGATCGCA
CCTTTTTTTCCAAGTTTTGTCGCACAAGATCGGAAGCCACCATGGCTCAG
TCTCCGCGAGCGCTTGTGTGGTGCTGAGTAGCCGAGGTCAAGAACTTGGC
TGCGGCTTGACCCAAGGAGTGAAGCGTCTTTAATATCTGGAGTGAGCGTG
CCCGTGTAAATGGCTTGAAGCGAAAGGTGATAAATTGGTTCGCTGATGTA
GGAATTTCATGCGTCTTTGCCTCGTCTTTTGAAAGTCTGCGTGCCTTGAC
CGCAAAAAAAGGCCGAACTTTGACAGCCAATGATCCTAACCGTTTTCAAA
TCTTACATCAGCAGACTCGGTTGTCGCCTCCGTCATTTGGCCGCCTGGTT
TGCTCTAGTTTTATTACCTTACATAAACTCACAGCTATTTTTGATCCCCT
TCCTGGATTAAATTGGACGTATCTGGGGTCATTCCTCGAGGCTAAGGTAA
TTTCATGAAAACTATTGCCTCAAAACTATGCAAAGCTGACTATGTGTCAT
AGCTAGAGATTTGATTCCTGGTCCTAAATGTCCGGGGCCTTCAAACAAAC
AATAACAAAACACATATCTTTACGCGGCTTCGGCCAATAAGCAAACTTCA
AGGAAAAACAATCATATGAGCACTTTCCCATCATAGAAACATACTGTGAC
CCGAAAACTGGATACCACCACCCATGGAATTGCAAAGCCTCAAAGGGACT
CTGGCTCATACTTATTATCACTAAGTCGACTTTGAAAACATGATGTAGAT
TTACTTAAGTTACTTTAGTTAAGATAGCTATATGTTATTAACTCTGCAGA
GTGGTGATATTAAAGTTACTTTAGTTAAGCTAACGCTATGTTACTAACTC
TGCAGAGTATGTTATTAACTTTGCGGCTTGGCAAATTGCACGTTCGCTTA
CCATGATGCCTGGGTAGATATCTCAAAGTCGATATAGATGCAAATGGCCT
GGTCACGAAACCCTGTATATCTGGAAGCATTACTCAACATTGTACAGTAC
ATGGCCAAACTCAAAAATGACCAAATTTTCAGATTGGAAATTCAACGTTA
AAAAGATGGATCTGGTCCAAGTGTCCAATAACGAAAACGAATGCCAGATA
ATATTGCTGTCTCTGGGCAACCTGGGAAGCTCTCAGTGATGTCAGGCTGG
CCATGTTCAGCCCATTAATGCTGCATTAGTCGTGATTATCTACTTGGCAA
CCAATTTTGAGCTGAACACATCTGGTCACTTTTGACATCGACCCTAAGTC
TGGCAAGCTTAGTTCAGAGAAGTAGATATACAAGAGATTGGTCAGGTTGG
GGGGCCTCGCTGCCTTGACGGCAATTGCCGGGCTCTTCGTATAAGTTGCC
TCCAAATTCATTCTCGACACACACGGCAGACTCTCCTCAGCAATGGCATC
ACGCCTTCGCTCATGTACCGGGGCTTTCATCGATTCCGTTCTAAAATGGA
CACGGTGATATCCGTCGGCATTGGTGGCTTCAGCTCGAGACCCTGACTGG
GATATCTATACTATACAGGGCGCGTACAGGGCTTCGTCCTACATAGAGGA
CAGTGAAAAATCCAAATTAGAGGACATATACGGAGTTTTGAAAAAAATAG
AGGACAACCTTTGGTACTTTTTTTATATACAATGTCATCTTTAAATATCA
ATTCCCCCCTCCCCATCGTTCGATATTTCGTTGGCAGGATAACTCATTTG
CAATAATCAATTTGAAAAAAGCTTCGTCAACTCTCAGAAATTAGTTTTTG
ACAAGATTCAATCACAGCGTCAGGTCCGATTTTTTTATGTTTCAGGGGAA
ACTTCGGTCATTATTTCCCTCCATTTACTTTTTTCTTAACTTTCCAATAT
ATTCTGACGTGTCTGTCCAACTATATAAAAAGGGTTGTCGATTATGAAAG
ATTTTTGGTTTTAAAGGGCTACGAAGCAGAATGGGGAAAAATGAAGGGAC
CAGATAAAAAAAATACTAAAATTCCAAAATCCATTTTTACAATTTAGAAA
TGCATCTTGCCAAATGTGACACTCACTGTTATGTCCATTTCGCAATGTCG
AATTTTTGACGTATTATCAAGTAATATTCGGCATTTCTTAAGATTTTTCG
AATTCTTAACCTCCATTTCTTGTCATACCCAAATTATGTTCGTTTTCTTT
AGGTCTATCTGATTTTACTCCATCTGTGTGTTGCTTCGTTCTTTAGCAGG
CTATTACAATAATAGTCATAGAAAAAATTATCATGATTTCATCCCTATTT
CTTCTTTTCAAAACTGTCTTTTTCCATCATTCTTTTCAAGTCTTTCTTTT
TACAATCTGTAAATGCACCCTCCTATCAGTAAAATATATTAATTCTCGAA
AAAATACTCATCGAACCTATTATGAATTGTGATGTTTTTTCGTGAGATTA
TTCGTTACTTTACAGATGCATTCTCCCATGGCAGGCTTATATTTTGTTAA
TTGGCGATTTTTTTCGAGGATTCACTCATCTTTTTGCTGGAAAGCTGCTT
TTTCAGTCATTTTTGCTGGTTTTATTTGCTGAAAACGGCATTTTCGGCTG
TTTCCAGCGTTTTTTGGGGCAATTTATTCCCTTGTAACAGTCCTTCTTAT
GACATTGCATCTACTCAGGGCCAAACAATGCTGAAACAAGCATAAAAGCC
AAAATTACTTAATTAGGTAAAAGTTTTAACTGAACGAAATCATCTAGGGT
GAAACGCTATTTTTGAGGTGGCTTCTTTAGCAAAAGCAATTCATTCTATG
GGTGAATTCCATATATTCACACATTTTGCTGCTTCGTCTCGCCGTCAGGT
CTTTTTGAGGTCTGTCAGTCTTTTTGCGTCCCCTTCACGCATATTTTTTT
CTGTAGGTCGAAATACTACGAAATTACCTAGACCATTTTTTTAGTATCCC
AAATCCTCATTTCAATGAAAAGCCAGTAACTATCAGATGACACAGGACGA
GAAAAACCGGCCATAGAATTTAAGAAAAAATACGGGAAATTTCAGACATA
TAGCCAAACTGTTAAACCGTTTTTTGCTCGAGTATTTAAAGTTTGGTTAG
TTAGGATTTAGCACCAATTTGTGAAAAACTGACAAGTAATCCGTAAAAAA
AAGAAATAGAGGACACAACTCGTTTCTAGAGGAATTTAGAGGACATTTCA
ATTCATGGATGTCCTCTAGAGGACATGGAGGACACCGTACGCGCCCAGTA
ACTACGTATAATGGAGCTTATTCTGTTTGTATGTCGCACGTTTTTCTCAG
GATCGGCGGAATAGAGTGAGCCGATTTTTTCAGGGCACCTCGGGACCTCC
CCCGAGGAGTACCTAACACTCTTGGATTTTCAAGTTTACACACCTAACAC
CTTAAAAGTGTGTTTTAAAACATTTTCGGCTCCGTTTGCCCGGAGGGCAA
GTTTCGCTCGGCCACGACGGGCGCGAAATTCGAAGCGAGTTCGAGAAGCG
AAACTCGGCCGGAGGTCGAGCATGGGCTGAGGGCCGAGCATGGGCCGAAG
GCCGGGGATGGCCGAAGGCCCAACAAGTGTGTGCGAGAAGTGAAAGAAGG
CCGAAGGCCCAACAAGTGTGCGATAATTGAAATTCTGCCGAAGGCCGAGC
ATTGGTAGGGGATGGGCCGAAGGCCCAACATAGCCTTCCGCAGGAACTAG
GAAAAAGACGCCCGTAGGGCGTCCTTTATGCTAGTTCCTTTAAATGCACA
TCTTATGTGACGCGAGCGGCTTGTGGCTTCGACTCTTCAGATTAGACTCA
CTTTAAAAGCACTAGCAATTAGCAGTTATGCCAAACAAAAGGACTAAGCT
ACGCCAAACCGATGGTGAGATATACGTAGGTTTAATGCTTGAGGTTGCGA
CAAATTGGCATTCATGACGTAAATTCGATGATGTGACTATGAAGAAAGAA
TGTTGACTCCCAAAAATACAGATCTCAGTTGCATTGTTTCGAAATATATC
CTGTAATAACATGGCACCCACACAATGCCAGCACGATAACATCCAATTTC
TTGCTTGTTTAAGGGGCTATAAACTATCCTGGATGAAGGGCTCCTAGATA
TTTCAAGGTAGCTCTTAACTCACAAAGGGTCAATTCGGTGTTCGCATCAC
TACATTTGAGTGGGTGAGTTGGGATTTAGAATTCAGATGCATTTCCGTTC
CCCATGAACACATTTGAATTGAACGCAACCATTGATCGTAGTAACTCACC
CTTCAGTACAATGAGCACACTACTGCATAATTACGCGGAATATGCCACTC
GAATGGAGCGCTTGAATGAATTTGGATGTTAGTAATAGTAAATGTTAGTG
TTAGTAATTACTTTGAAAATATGATCATGCAGCTTTGACAGAATTTGTGC
TATGTTAGGAGTGCACTGTGGCTTGGCTTTGTTTAGAACTCTTTCGCTTC
GGCCGATCAGGCAGTACAGACCTAGTTTTTCCCTCAACCTGACCAATCTC
TTGTACAGTATATCTACTTCTCTGGCGTAGTTCTTCCATATGTACAGGGT
TCCTGCCTGGCTGACAAATTTGACACCGCTGGTTGCTTTACCCTTAAAAA
TCCGCAGCTCATGTAGTGGTCGAAACTTCTTATGCCCAGAAATCGTCGAA
GATGATGAAAAAGGGAACACTTGACCGCGGCTTTTGTTTCAAGTTTAATT
GCAGTTTAACAATTCCATTATTGATCCGACGCGTCACTTTTGA

Synonyms

The feature 'unknown' has the following synonyms


Synonym
Tk02328

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