achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter, snap_masked-scaffold462_size163801-processed-gene-0.22 (gene) Tigriopus kingsejongensis

Overview


Name	achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter
Unique Name	snap_masked-scaffold462_size163801-processed-gene-0.22
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24")

HSP 1 Score: 90.5077 bits (223), Expect = 3.993e-19
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0

Query:  149 LCPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKY 237
            +C VC      H +YG   C SCR FFRR+V  +H   F C  DQ C I  T+R++C++CRYK+CL++GMKP  V+S  ++  R L KY
Sbjct:   90 VCNVCGDKAPDHIHYGGIACFSCRAFFRRSVP-KHTTYF-CSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKY 176

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22")

HSP 1 Score: 90.1225 bits (222), Expect = 4.852e-19
Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 0

Query:  107 ITDILALEEVDN--LPQGRQ-GFKDTQDAISKSPAQAQNGASEA--QLCPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCL-QDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL 244
            I +IL+L E  +  L    Q  F +   A    P+       EA  +LC +C    G H YYG + C SCR FFRR+VQN     F C  + + C I+  +R+SC+ CR+++C+ AGM+   V+   +R+ +      NN  PL
Sbjct:   58 INEILSLSESSDSFLSNADQVNFNELNSATLSEPSSQIIIRREALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSKKSAMILNNNTPL 201

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19")

HSP 1 Score: 85.5001 bits (210), Expect = 1.879e-17
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 0

Query:  148 QLCPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCL-QDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRK-KRILQKYQNNEGPL 244
            +LC +C    G H YYG + C SCR FFRR+VQN     F C  Q + C I+  +R++C+ CR+++C+ AGM+   V    +R+ K+      NN+ PL
Sbjct:  105 RLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKKSAMTLNNNKPPL 203

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6")

HSP 1 Score: 83.9593 bits (206), Expect = 7.015e-17
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL 244
            +LCPVC  + +G H  YG+  C SC+GFF+RTVQN+   ++ C+ D+ C ID T R+ C YCR+++CL  GMK + V     R  R      N  GP+
Sbjct:  184 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQNKK--VYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGR------NKFGPM 271

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13")

HSP 1 Score: 82.4185 bits (202), Expect = 1.944e-16
Identity = 53/173 (30.64%), Postives = 82/173 (47.40%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADR---KKRILQKYQNNEGPLNCDA--NLTHVRRAFGLTTI---------FTTEDELEVGQEFKVFLEFSHEA-----YINHFSEHLDVFGEL 300
            Q C VC  R TG H  YG   C  C+GFFRR+V+ E   ++ C Q++ C ++   R +C+YCR K C++AGMK   V +  DR   +K+   K  N+   L   A  N   V +   L +I         F TE+ +   ++     +  H        +  +++H+  F EL
Sbjct:  149 QNCAVCGDRATGKH--YGAASCDGCKGFFRRSVRKER--VYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRISCRKKTSAKDMNSANELTVTALLNADKVGQKSLLNSIVGGNINTNNFITEENVLANKQLASIEDIGHSMKEQLIVLVEWAKHIKAFCEL 317

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53")

HSP 1 Score: 78.9518 bits (193), Expect = 3.928e-15
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 0

Query:  134 SKSPAQAQNGASEAQ---LCPVCQ-RPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGM 218
            S  P    N +S+ Q   +C +C+ R TG H  YG+  C  C+GFF+RTVQN+   ++ C+ D  C I+   R  C+YCR+++CLQ GM
Sbjct:  264 SGGPGDNNNPSSQPQQSLVCMICEDRATGLH--YGIITCEGCKGFFKRTVQNKR--IYTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1")

HSP 1 Score: 75.8702 bits (185), Expect = 3.360e-14
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 0

Query:  149 LCPVCQRPTGTHA---YYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKR 232
            LC VC    G +A   +YGVR C  C+GFF+RTVQ   N  + CL D+ C +D   R  C++CR+++CL  GM  ++V + + + +R
Sbjct:  408 LCAVC----GDNAACQHYGVRTCEGCKGFFKRTVQK--NAKYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRR 488

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3")

HSP 1 Score: 73.9442 bits (180), Expect = 7.406e-14
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query:  150 CPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVM 224
            C +C      H +YG   C SCR FFRR V    N  + C +D+ C I   +R+ C++CR+ +CL+AGMK   VM
Sbjct:   63 CHICSDTANDHIHYGAIACXSCRAFFRRAVI--CNAEYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVM 135

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5")

HSP 1 Score: 73.9442 bits (180), Expect = 7.683e-14
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 0

Query:  144 ASEAQLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADR 229
            +     C +C  R +G H  YGV  C  C+GFF+RTV+ E  + + C +++ C ID   R  C+YCRY +CL  GMK + V     R
Sbjct:   85 SGSKHFCSICGDRASGKH--YGVYSCEGCKGFFKRTVRKE--LTYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHR 167

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5")

HSP 1 Score: 73.9442 bits (180), Expect = 9.757e-14
Identity = 39/134 (29.10%), Postives = 59/134 (44.03%), Query Frame = 0

Query:  101 ILSNNDITDILALEEVDNLPQGRQGFKDTQDAISKSPAQAQNGASEAQLCPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQ-----MCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADR 229
            +++NN+I D   L  V   P          +   +   + +       +C +C      H +YG   C SCR FF RTV       FRC++        C I   +R  C++CRY+ CL AGM P  V ++ +R
Sbjct:   91 LVNNNEIEDFTILNAV---PLPESPIPSLIEVKEEPKKRKRRPEPMTDVCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
Match: gi|7676156|sp|O00482.2|NR5A2_HUMAN (RecName: Full=Nuclear receptor subfamily 5 group A member 2; AltName: Full=Alpha-1-fetoprotein transcription factor; AltName: Full=B1-binding factor; Short=hB1F; AltName: Full=CYP7A promoter-binding factor; AltName: Full=Hepatocytic transcription factor; AltName: Full=Liver receptor homolog 1; Short=LRH-1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.222e-16
Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL 244
            +LCPVC  + +G H  YG+  C SC+GFF+RTVQN  N  + C+++Q C ID T R+ C YCR+++CL  GMK + V +   R  R      N  GP+
Sbjct:   84 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQN--NKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGR------NKFGPM 171

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
Match: gi|81907060|sp|Q9QWM1.1|NR5A2_RAT (RecName: Full=Nuclear receptor subfamily 5 group A member 2; AltName: Full=FTZ-F1 beta; AltName: Full=Liver receptor homolog 1; Short=LRH-1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.093e-16
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL 244
            +LCPVC  + +G H  YG+  C SC+GFF+RTVQN+    + C+++Q C ID T R+ C YCR+K+C+  GMK + V   ADR    ++  +N  GP+
Sbjct:  105 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQNQKR--YTCIENQNCQIDKTQRKRCPYCRFKKCIDVGMKLEAV--RADR----MRGGRNKFGPM 192

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
Match: gi|7676159|sp|P45448.3|NR5A2_MOUSE (RecName: Full=Nuclear receptor subfamily 5 group A member 2; AltName: Full=Liver receptor homolog 1; Short=LRH-1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.351e-16
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL 244
            +LCPVC  + +G H  YG+  C SC+GFF+RTVQN+    + C+++Q C ID T R+ C YCR+K+C+  GMK + V   ADR    ++  +N  GP+
Sbjct:  105 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQNQKR--YTCIENQNCQIDKTQRKRCPYCRFKKCIDVGMKLEAV--RADR----MRGGRNKFGPM 192

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
Match: gi|3334187|sp|O42101.1|NR5A2_CHICK (RecName: Full=Nuclear receptor subfamily 5 group A member 2; AltName: Full=FTF/LRH-1; AltName: Full=OR2.0)

HSP 1 Score: 85.8853 bits (211), Expect = 4.470e-16
Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL 244
            +LCPVC  + +G H  YG+  C SC+GFF+RTVQN  N  + C+++Q C ID T R+ C YCR+++CL  GMK + V +   R  R      N  GP+
Sbjct:   44 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQN--NKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGR------NKFGPM 131

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
Match: gi|45644987|sp|P33244.2|FTZF1_DROME (RecName: Full=Nuclear hormone receptor FTZ-F1; AltName: Full=FTZ-F1 alpha; AltName: Full=Nuclear receptor subfamily 5 group A member 3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.396e-15
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL 244
            +LCPVC  + +G H  YG+  C SC+GFF+RTVQN+   ++ C+ ++ C ID T R+ C YCR+++CL+ GMK + V   ADR +    K+    GP+
Sbjct:  506 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQNKK--VYTCVAERSCHIDKTQRKRCPYCRFQKCLEVGMKLEAV--RADRMRGGRNKF----GPM 593

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
Match: gi|49036491|sp|Q95L87.1|STF1_MACEU (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Nuclear receptor subfamily 5 group A member 1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.714e-15
Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL-NCDANLTHVRRAFGLTTIFTTEDELEVG 272
            +LCPVC  + +G H  YG+  C SC+GFF+RTVQN  N  + C + Q C ID T R+ C YCR+++CL  GM+ + V +   R  R      N  GP+   D  L   ++A      F  E    +G
Sbjct:   11 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQN--NKHYTCTESQNCKIDKTQRKRCPYCRFQKCLTVGMRLEAVRADRMRGGR------NKFGPMYKRDRALKQQKKALIRANGFKLETGPSMG 127

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
Match: gi|133495|sp|P18515.1|RARB_NOTVI (RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName: Full=Nuclear receptor subfamily 1 group B member 2)

HSP 1 Score: 76.2554 bits (186), Expect = 6.767e-15
Identity = 33/84 (39.29%), Postives = 54/84 (64.29%), Query Frame = 0

Query:  150 CPVCQ-RPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKR 232
            C VCQ + +G H  YGV  C  C+GFFRR++Q   N+++ C +D+ C I+  +R  C+YCR ++C + GM  + V +  ++KK+
Sbjct:   34 CFVCQDKSSGYH--YGVSACEGCKGFFRRSIQK--NMIYTCHRDKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDRNKKKK 113

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
Match: gi|148886624|sp|P41235.3|HNF4A_HUMAN (RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha; AltName: Full=Nuclear receptor subfamily 2 group A member 1; AltName: Full=Transcription factor 14; Short=TCF-14; AltName: Full=Transcription factor HNF-4)

HSP 1 Score: 81.6481 bits (200), Expect = 8.753e-15
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 0

Query:  140 AQNGASEAQLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGP 243
            A N    + LC +C  R TG H  YG   C  C+GFFRR+V+  H  ++ C   + C +D   R  C+YCR K+C +AGMK + V +  DR       Y+++  P
Sbjct:   50 APNSLGVSALCAICGDRATGKH--YGASSCDGCKGFFRRSVRKNH--MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP 150

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
Match: gi|44889025|sp|P49867.2|FTZF1_BOMMO (RecName: Full=Nuclear hormone receptor FTZ-F1; AltName: Full=BmFTZ-F1; AltName: Full=Nuclear receptor subfamily 5 group A member 3)

HSP 1 Score: 81.6481 bits (200), Expect = 9.653e-15
Identity = 41/98 (41.84%), Postives = 63/98 (64.29%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL 244
            +LCPVC  + +G H  YG+  C SC+GFF+RTVQN+   ++ C+ ++ C ID T R+ C +CR+++CL  GMK + V   ADR    ++  +N  GP+
Sbjct:   87 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQNKK--VYTCVAERACHIDKTQRKRCPFCRFQKCLDVGMKLEAV--RADR----MRGGRNKFGPM 174

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
Match: gi|148886627|sp|Q91766.2|HNF4A_XENLA (RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha; AltName: Full=Nuclear receptor subfamily 2 group A member 1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.105e-14
Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 0

Query:  129 TQDAISKSPAQAQNGASEAQLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGP 243
            T D  S S   A N      LC +C  R TG H  YG   C  C+GFFRR+V+  H  ++ C   + C +D   R  C+YCR K+C +AGMK + V +  DR       Y+++  P
Sbjct:   42 TSDVTSLS---ASNSIGINSLCAICGDRATGKH--YGASSCDGCKGFFRRSVRKNH--MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP 150

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr
Match: gi|657600350|gb|AID52836.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 141.354 bits (355), Expect = 6.609e-32
Identity = 92/305 (30.16%), Postives = 153/305 (50.16%), Query Frame = 0

Query:   72 NFNLVDFIDGDWS---QELVSPTSLD--PGCD-KVILSNNDITDILALEEVDNLPQGRQGFKDTQDAISKSPAQAQNGASEAQLCPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQ-DQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSS-----ADRKKRILQKYQNNEGPLNCDANLTHVRRAFGLTTIFTTEDELEVGQEFKVFLEFSHEAYINHFSEHLDVFGELIRCAYLGCIYPVHLMRSMDHLDEATTANYLFLWVEMRDLSPFDRMTLFQNNYPLIYGLLWGTFS 364
            +F+++ +I  D +   ++  SP SLD  P  +   I S +  + +  +  +    Q     +D ++       Q++ G  +  LCP+C    G H YYGV+ C+SCRGFF+R+V+N  ++ F C +  Q C I + SR++CK+CR+++CLQ+GMK   VM+        + K IL        P+        + +   L+ IFT  +  +    +K  L F + +Y   FS++   F   +R        P  +  +    ++  T NY F   +M  L+PFDRMTL  +N+P I+GLLW  +S
Sbjct:   14 SFDILKYICDDLAGLEKDFSSPNSLDFAPRSNGPPIESESHFSQVEPMTPIQPFMQVSSSSEDLEET------QSEVGTQQP-LCPICNDVAGKHFYYGVQACISCRGFFQRSVRNRFHLKFICCKGTQNCRITARSRKNCKWCRFQKCLQSGMKTCYVMTHDKSGLPPKSKLIL--------PIKA------MVKTANLSQIFTEHEVDKALSIYKNLLSFGYRSYYQLFSQNEQEFMTFLRALNDQGGGPSMISEAFTETNKQATINYFFSIDDMASLTPFDRMTLISHNFPSIFGLLWSVYS 297

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr
Match: gi|728054567|gb|AIY67763.1| (HR97a-like receptor 4 [Tigriopus japonicus])

HSP 1 Score: 120.939 bits (302), Expect = 3.727e-25
Identity = 67/216 (31.02%), Postives = 108/216 (50.00%), Query Frame = 0

Query:  148 QLCPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPLNCDANLTHVRRAFGLTTIFTTEDELEVGQEFKVFLEFSHEAYINHFSEHLDVFGELIRCAYLGCIYPVHLMRSMDHLDEATTANYLFLWVEMRDLSPFDRMTLFQNNYPLIYGLLWGTF 363
            +LC VC  P G H YYG +VC SCR FFRR++QN+ + ++ C   + C IDS SR+SC +CR+++CL AGM P+ +++  +RK + L+  Q+          +  ++R   L   FT E++L+V +  K   +F      NH ++ +     L + A       V  +  ++  +            EM DL   DR TL Q N    + L+   +
Sbjct:   69 RLCHVCNLPAGKHNYYGGQVCESCRAFFRRSIQNQTHPIYHCKAKKCCIIDSKSRKSCAWCRFQKCLLAGMNPKWIITDQERKFK-LEAKQSKIMKAKMKQEIVPIQRPVELK--FTVEEKLKVERLSKYARKFKVSVLANHLAQDIAPLKTLWKLALNLETPSVDFIHFLEEKETTIFRTIALGLEEMTDLDSEDRETLVQRNSTAFFALIMSIY 281

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr
Match: gi|657600348|gb|AID52835.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 118.242 bits (295), Expect = 3.569e-24
Identity = 79/275 (28.73%), Postives = 126/275 (45.82%), Query Frame = 0

Query:  114 EEVDNLPQGRQGFKDTQDAISKSPAQAQNGASEAQLCPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPLNCDANLTHVRR------AFGLTTI---FTTEDELEVGQEFKVFLEFSHEAYINHFSEHLDVFGELIRCAYLGCIYPVHLMRSMDHLDEATTANYLFLWVEMRDLSPFDRMTLFQNNYPLIYGLLWGTFSKRCAQMEIIDLAFNR 379
            + + N P      +D+ D  S +P +  N +   + CPVC  P+G H+YYG +VC SCR FFRR+  N     F+C   + C I+S S +SCK+CRY++CL AGMK   V++  +R +R              +AN   +R+      AF  T I   +TT++E ++ Q    FL           S + ++F   + C      +   L+        +     +   + M+D+ P DR  L  +NYPL          +   +ME I   F++
Sbjct:   74 QTITNDPNIVSQTEDSSD-FSDTP-RTPNLSKPHRECPVCDNPSGKHSYYGAQVCFSCRAFFRRSTINSTFTEFQCKDSKTCGINSKSWKSCKFCRYQKCLSAGMKSTWVLNDEERVQR--------------NANRKRLRKIREAGVAFSETFIGNQWTTDEEHQIRQARNDFLLKGFGVIAQFCSSNPNIFDRYVDCLNGNTPFDPMLVGYTRRFIYSEVMKSISDLLIMKDIHPVDRFLLLSHNYPLWVSFEEAVQFRNHQEMEKIQQTFSK 332

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr
Match: gi|657600346|gb|AID52834.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 114.005 bits (284), Expect = 1.197e-22
Identity = 61/216 (28.24%), Postives = 105/216 (48.61%), Query Frame = 0

Query:  150 CPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPLNCDANLTHVRRAFGLTTIFTTEDELEVGQEFKVFLEFSHEAYINHFSEHLDVFGELIRCAYLGCIYPVHLMRSMDHLDEATTANYLFLWVEMRDLSPFDRMTLFQNNYPLIYGLLWGTFSK 365
            CPVC  P+G H YYG +VC SCR FFRR+  N     FRC  D+ C IDS S +SCK+CR+++CL AGM+P  VM+  +R +R  ++ +     ++      +V     L+  +T +++L++    +   E +       ++++  +  + I CA     +   L+                  + ++ ++P DR  L   NY      +W +F +
Sbjct:  115 CPVCGNPSGKHLYYGAQVCSSCRAFFRRSTINSAAEEFRCKADKKCGIDSKSWKSCKFCRFQKCLSAGMRPNWVMNDEERTQRNAKRKRTRTKRVD------NVVSEAVLSHQWTVDEDLQIRGIREEIFEKTSCIIAKFYADNPMILNKFIACANNRTPFDSVLLAYTKRFVSNGMMKMFNELLVLQHINPMDRFLLLSRNYA-----MWSSFEE 319

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr
Match: gi|1325306415|ref|XP_023334818.1| (oxysterols receptor LXR-alpha-like [Eurytemora affinis])

HSP 1 Score: 99.3673 bits (246), Expect = 1.653e-19
Identity = 65/236 (27.54%), Postives = 110/236 (46.61%), Query Frame = 0

Query:  120 PQGRQGFKDTQDAISKSPA------QAQNGASEAQLCPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPLNCDA-NLTHVRRAFGL----TTIFTTEDELEVGQEFKVFLEFSHEAYINHFSEHLDVFGELIRCAYLGCIYPVHLMRSMDHLDEATTANYLFLWVEMRDLSPFDR 344
            P G++G K+  +     P       + +N     + C VC    G H+YYG +VC SCR FFRR+V +  N  + C+++  C ++S +R+ C+YCRY+ C  AGMK   V++  ++K   L+  +  EG    ++ +   V     L    ++IF +E EL +  E     +F   + +N     L    E+ R    G +     +  +    +  T N+     E++ LS  DR
Sbjct:    8 PGGKRGLKEGLEGSDPPPKGIKRRRKDENDDDIFRACKVCGEEAGRHSYYGGQVCASCRAFFRRSVNSGANKAYFCVKNGNCEVNSKTRKQCQYCRYRLCEDAGMKTSWVLTDTEKK---LKSSEGKEGKQKRNSIDYDEVSNPPSLSGESSSIFISETELVLINELVEISDFWETSKVNDMDTTL--IREIFRMVAFGSMLSEVGLAQLAGTMKLRTKNFALRLRELQQLSKQDR 238

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr
Match: gi|657600344|gb|AID52833.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 100.138 bits (248), Expect = 5.930e-18
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 0

Query:  115 EVDNLPQGRQGFKDTQDAISKSPAQAQNGASEAQLCPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRI 233
            +V+  PQ   G  D+++ + KS     N  +    C +CQ   G H YYG + C SCR FFRR VQ+++  +F C + + C I+  +RRSC++CR+K+CL +GM+   V+   +R +R 
Sbjct:  159 QVNPEPQKSPGALDSEENLPKSTMPPSNWDNTK--CYICQEKAGKHNYYGGKACPSCRAFFRRAVQSKYYEIFFCNKGEKCEINLKTRRSCQFCRFKKCLASGMRVAWVLPDGERNRRF 275

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr
Match: gi|83753936|pdb|2A66|A (Chain A, Human Liver Receptor Homologue Dna-binding Domain (hlrh-1 Dbd) In Complex With Dsdna From The Hcyp7a1 Promoter)

HSP 1 Score: 88.9669 bits (219), Expect = 2.671e-17
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL 244
            +LCPVC  + +G H  YG+  C SC+GFF+RTVQN  N  + C+++Q C ID T R+ C YCR+++CL  GMK + V   ADR    ++  +N  GP+
Sbjct:   10 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQN--NKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAV--RADR----MRGGRNKFGPM 97

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr
Match: gi|1101273707|pdb|5L0M|A (Chain A, Hlrh-1 Dna Binding Domain - 12bp Oct4 Promoter Complex)

HSP 1 Score: 88.9669 bits (219), Expect = 2.724e-17
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL 244
            +LCPVC  + +G H  YG+  C SC+GFF+RTVQN  N  + C+++Q C ID T R+ C YCR+++CL  GMK + V   ADR    ++  +N  GP+
Sbjct:    9 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQN--NKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAV--RADR----MRGGRNKFGPM 96

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr
Match: gi|1325258266|ref|XP_023325470.1| (uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258271|ref|XP_023325479.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258277|ref|XP_023325484.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258282|ref|XP_023325492.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258289|ref|XP_023325500.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258292|ref|XP_023325508.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258296|ref|XP_023325515.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258300|ref|XP_023325523.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258306|ref|XP_023325531.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258311|ref|XP_023325539.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258315|ref|XP_023325547.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258319|ref|XP_023325554.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258329|ref|XP_023325561.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258334|ref|XP_023325570.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258338|ref|XP_023325578.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258342|ref|XP_023325585.1| uncharacterized protein LOC111699122 [Eurytemora affinis])

HSP 1 Score: 96.2857 bits (238), Expect = 1.269e-16
Identity = 38/104 (36.54%), Postives = 64/104 (61.54%), Query Frame = 0

Query:  145 SEAQLCPVCQRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKR---ILQKYQNNEGPLN 245
            S  + C +C  P   H +YG   C SCR FFRR++QN+    + C + Q C I+  +R++C++CRY++CL  GMK   V+S  +R++R   + ++++ N+ P N
Sbjct:   36 SPTEKCKICNEPAAKHIHYGAMTCFSCRAFFRRSIQNKTANSYTCRRSQNCEINLRTRKNCQFCRYQKCLSVGMKTNWVLSEEERQRRFRKVRERHEANDLPQN 139

[Close]

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr
Match: gi|554618858|dbj|BAO02846.1| (nuclear receptor FTZ, partial [Periplaneta americana])

HSP 1 Score: 86.2705 bits (212), Expect = 2.218e-16
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 0

Query:  148 QLCPVC-QRPTGTHAYYGVRVCVSCRGFFRRTVQNEHNVLFRCLQDQMCTIDSTSRRSCKYCRYKQCLQAGMKPQLVMSSADRKKRILQKYQNNEGPL 244
            +LCPVC  + +G H  YG+  C SC+GFF+RTVQN+   ++ C+ ++ C ID T R+ C YCR+++CL  GMK + V   ADR    ++  +N  GP+
Sbjct:    6 ELCPVCGDKVSGYH--YGLFTCESCKGFFKRTVQNKK--VYTCVAERRCHIDKTQRKRCPYCRFQKCLDVGMKLEAV--RADR----MRGSRNKFGPM 93

The following BLAST results are available for this feature:

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr

BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 23


Match Name	E-value	Identity	Description
EMLSAG00000012651	3.993e-19	46.07	supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 ge...	[more]
EMLSAG00000011907	4.852e-19	34.72	supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1...	[more]
EMLSAG00000010267	1.879e-17	39.39	supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1...	[more]
EMLSAG00000008902	7.015e-17	42.86	supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1...	[more]
EMLSAG00000007361	1.944e-16	30.64	supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1...	[more]
EMLSAG00000008543	3.928e-15	41.57	supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1...	[more]
EMLSAG00000013004	3.360e-14	40.23	supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 ...	[more]
EMLSAG00000008261	7.406e-14	41.33	supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 ...	[more]
EMLSAG00000001919	7.683e-14	39.08	supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1...	[more]
EMLSAG00000004174	9.757e-14	29.10	supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-...	[more]

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|7676156\|sp\|O00482.2\|NR5A2_HUMAN	3.222e-16	43.88	RecName: Full=Nuclear receptor subfamily 5 group A...	[more]
gi\|81907060\|sp\|Q9QWM1.1\|NR5A2_RAT	4.093e-16	43.88	RecName: Full=Nuclear receptor subfamily 5 group A...	[more]
gi\|7676159\|sp\|P45448.3\|NR5A2_MOUSE	4.351e-16	43.88	RecName: Full=Nuclear receptor subfamily 5 group A...	[more]
gi\|3334187\|sp\|O42101.1\|NR5A2_CHICK	4.470e-16	43.88	RecName: Full=Nuclear receptor subfamily 5 group A...	[more]
gi\|45644987\|sp\|P33244.2\|FTZF1_DROME	1.396e-15	42.86	RecName: Full=Nuclear hormone receptor FTZ-F1; Alt...	[more]
gi\|49036491\|sp\|Q95L87.1\|STF1_MACEU	5.714e-15	37.80	RecName: Full=Steroidogenic factor 1; Short=SF-1; ...	[more]
gi\|133495\|sp\|P18515.1\|RARB_NOTVI	6.767e-15	39.29	RecName: Full=Retinoic acid receptor beta; Short=R...	[more]
gi\|148886624\|sp\|P41235.3\|HNF4A_HUMAN	8.753e-15	37.14	RecName: Full=Hepatocyte nuclear factor 4-alpha; S...	[more]
gi\|44889025\|sp\|P49867.2\|FTZF1_BOMMO	9.653e-15	41.84	RecName: Full=Nuclear hormone receptor FTZ-F1; Alt...	[more]
gi\|148886627\|sp\|Q91766.2\|HNF4A_XENLA	1.105e-14	37.07	RecName: Full=Hepatocyte nuclear factor 4-alpha; S...	[more]

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BLAST of achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|657600350\|gb\|AID52836.1\|	6.609e-32	30.16	nuclear receptor [Tigriopus japonicus]	[more]
gi\|728054567\|gb\|AIY67763.1\|	3.727e-25	31.02	HR97a-like receptor 4 [Tigriopus japonicus]	[more]
gi\|657600348\|gb\|AID52835.1\|	3.569e-24	28.73	nuclear receptor [Tigriopus japonicus]	[more]
gi\|657600346\|gb\|AID52834.1\|	1.197e-22	28.24	nuclear receptor [Tigriopus japonicus]	[more]
gi\|1325306415\|ref\|XP_023334818.1\|	1.653e-19	27.54	oxysterols receptor LXR-alpha-like [Eurytemora aff...	[more]
gi\|657600344\|gb\|AID52833.1\|	5.930e-18	36.97	nuclear receptor [Tigriopus japonicus]	[more]
gi\|83753936\|pdb\|2A66\|A	2.671e-17	44.90	Chain A, Human Liver Receptor Homologue Dna-bindin...	[more]
gi\|1101273707\|pdb\|5L0M\|A	2.724e-17	44.90	Chain A, Hlrh-1 Dna Binding Domain - 12bp Oct4 Pro...	[more]
gi\|1325258266\|ref\|XP_023325470.1\|	1.269e-16	36.54	uncharacterized protein LOC111699122 [Eurytemora a...	[more]
gi\|554618858\|dbj\|BAO02846.1\|	2.218e-16	42.86	nuclear receptor FTZ, partial [Periplaneta america...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold462_size163801	supercontig	scaffold462_size163801:100761..109426 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	P:positive regulation of transcription
Note	DNA-dependent

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold462_size163801-processed-gene-0.22-mRNA-1	snap_masked-scaffold462_size163801-processed-gene-0.22-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold462_size163801:100761..109426-

gene from alignment at scaffold462_size163801:100761..109426-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold462_size163801-processed-gene-0.22 ID=snap_masked-scaffold462_size163801-processed-gene-0.22|Name=achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter|organism=Tigriopus kingsejongensis|type=gene|length=8666bp|location=Sequence derived from alignment at scaffold462_size163801:100761..109426- (Tigriopus kingsejongensis)
ATGGGCGGATTCGACCCCAACTCGCTGGCCCTGGTGACGAAAGATGTGGT
GGTTATCCACAACCGATCCCATATCAAGTTCATATTCCTGCGCTCGGGAC
GGTCCCGGTGTCTCGATCCCAAGAGTAATCGTGGCCTGGATACCATTGGT
GCTCACGATGAGTTGGAAGTGTTGGCTTGGAGCGATGGCGGGCCATTACC
CAATGTCCATGTCTTGCAATATGGGAGGCCGACTGAAATATCCACCCTCC
CTGGTAAGAGTGCTACTGCTAGTTGGTTGGTATCGGCGAAAATCATGAAG
TCATGTCCGCTGTTCAAAACGGCGAGAGCCAGCACATTCTGAACAATTCG
TTCAACGCGCAGCCCTTTGATTAAAAGTGTGCCCGCTCGTCTTTAGCCAT
GATGATTTTCCCAGGATGTTAGAAACAAAATAGACATACATATGATCTAT
ATTAGCTAGTCAGCGTGCAGCAGCTTTATAATCCAGTTCCAACCACTGCT
TTTATTTGTCGGGAACCAGAAGGGACCCTTCCTCAAGATGTGGCCGCACC
TGTGTGCTTGACCCTCAAAGACTAGGGTTACAAGGAGTCGTAAGTTCCCA
GCAGAAGTGGCTCCCCTTGTCAGTTCCCACCGACTCGAGAGTGGCGAAAA
ATTCTTCGCTGACCACTACGTACACCATACAATCTTCACAATGATTATTG
CTTTGTTATTGCTGGCCATTTTTTGTTTTTGGGTAAAGCTGATAAAAAAA
GTGTCTTCCTTCCGTTTCTTGATCTGGCCGAATCCGATGGTAAGAGCGCC
AAACAACAGTGAAAAACATCTCGACCCTGTAAGAATTTTGAAAGCTGACT
AAAATGGGCAGAACAAATTAATTAGCCAAAAAACTCATTATTTGTTTAAT
TTTTTGATCAGTGAAATTTACCAAAGAACACTCATGTCTACAGTGGATAG
GTGTGCTATTTAGAGTAATGATCTGCAATCTAGAGTACAGTACTGAGCAG
CGTAGCGATCAATCCGTAATAGTGCCATACAGAGACCTTGGATGGAGCAT
TCGAAGGCCTCCAATGAACTGACAGGACTTCCACATCCGGTGCAGCGCCC
TCCTCTACGCCCCTTCGTGCGCAAACCATGGTCACTTGGCCAGACCAGAG
GGTAAACATAAGAGAAGCGCATCCTCAGGCAAGCCAGCTGGTCCGCCGTA
TTTCAGGCGTGACATTTCAAATGTCAGATGCGGATGGGGCCTTTTTTCCT
CGAGTTTATGTACTACAATCACAGGGGGGATATTTGTATAATCCCCTATA
GCTGCAAATCTAGACTCCTAATTGAAAATTGAAAGAAAGGTGCCCAATTT
ATCTAGTTAATACTTGCATAATGGTGCACTTTTTCATAGATGTTTATGTC
TTGCATACGAAAAACGAAAGAGGTATTAGTTGGAAACCACCCAGTCATTA
GAAAATTTTGACTGATGGATAGGGGGCACCCTTTTTGGCGGCAAACCTTA
AAGTTGAATGGCAATCCTTAAAATATGAAGCCAACACTTTAGATAAAAGC
CAATTCCTCATTCTGCACCGGGTGATAGACCTGGCCAAGAGGTCCGAGCC
GGCCTAAATGGTGGACCTGAACCTCTATCACCTAAATAGAGTGGCCATTT
AACAATGGCGTGCTGTTGCGCCGTTGTTTCCCAGCATCCATAGCAAGATA
TGGCAACACTGCTATCAAGCTTTAACTCAGATCAGTTCAATATAGTAGCA
GCTTGACTAAAGACGTTTAAAGCAATTGTGCTGTCATAAAAATAGGATAA
AGAAAGGTTGCTCTTGAACCAATAGCTTGTCAAATAACGGTTTCTATTTC
AATAGTAAAAACATAGGTAAATAACCAACAATACAATACAAATAACAAAA
CGTTCACATACCGAACAGTTCGGGGTCTTGGCCACTATCACAGATCACAG
AAACAACACGGAAAGAACTGGCACGAATATGACTAGGCTGAAAGATGGAG
GCCAACAAGCATTCCAGCTGCGTAACAGGTGTAACTTTACGGCTTGACTT
CCAGTCTTAGAGATCATGAGCTGGAAGAATCTCTTTCACACTCTCACAAC
CTTTCTTTTCCTGAACTAGTGATCTCCTTTACACCAGCCCCTTAAATGTG
TGAAACATTTATAAAATAATACATAGAACGAATATGGGTCTAGAATTCTT
CATTGGCTTTGAGCAGCACGAGTTGAGAAATCGGTCGGTCAAATGTGGAC
GAAGCCGTCTTCTCTCGAGCTCGACCATCTTGGCTTGTCTTCGTCTCGAC
AACTCGACCCAAAGGCCAATTGCTTCTTTGCGAATTTTCGCGCACCAGGA
GCACCAAATCACCAACACAAAAGTTTCGTTGCTCCTTGTTCCATTTCTGC
CATTGCAATCTTCGGGTTATATACTCGTTGTGCCAACGTTTCCAGAAAAT
GTTGGACAAATGTTGAATATGTCTCCCAACGCTTTCGCGAATACGTTTCA
TCTCTGTTGGAGGAAAGGTTGGACCTGACTTCATCAACAGAAGATGGTTT
GACGTGATTGCTTCCAGGTCATTTGGATCGTCCGAAACCGGAGTTAAGGG
GCGACCGTTCAGGATTGCCTCAACCTCACACATCAGGGTGTTGAGCAACT
CGTCCGTGAGCATTATCGCTAGTTCTCCGAATAGACCATTGAAAACTTTC
CTGATGGTTCGAATCTCACTCTCCCACGCACCTCCTAAGTGATGAGCGTA
GGGTGGGTTGAATATCCATTCGATGCCCTTCTGCTTCATGGCATCAACAA
TCTCATTCTGATTCCATTCTTGTATGGCTTCTCGGAGCTCGCGACAAGCT
CCAACGAAATGGGTTCCGTTGTCAGATCGTAACCGTTGTACCTGGCCTCG
TCTCGCTATGAAGCGCCGAAGAGCTTGAATAAAGGAATCCGTAGATTTCG
AAGAGACGATTTCGATATGGATAGCCCGGCTGGGCCAATGTTCCATAGAG
AAAATGATTCCATAGAGAAAATGATTCCATAGAGAAAATGATTCCATAGA
GAAAATGATTCCATACCTATCCTCTGTACCTCGGCCTCGGACCACTTGAA
AAGGACCAAATAAGTCTACACCGGTACTCGAGAAGGGTGGTCCACTGCCT
GACACGCGATCCGAGGGCAAGTCGGCCATGCGCTGAACTCCAGGTTTCCT
TTGATATTTTCGGCATCGGATGCATTCATTGAGAATCTTCTTTACCAATT
GGGATTCTCCCACAATCAAGAACTTTCTCTAAGCTTGTATATAATGCATA
TAATGCACTTGATTTAATATCTAAGACTTAAATAATACTTTGTTAATGAC
AATTCTGCCATACCGTCATGTACTGATTATTTCAACGCACTTCTTCTCGC
AGTCACCATGCATGCAAGAGCCGAGCAAGCGATGCAGTAGGGATCGGAAA
AGTATATATTGAAAAGCAACAAAAGGGGGGGAATTCGGCTGCTTACTAAC
TTAATCAAATTTTGGCCAAGCTGGAGGGCCATACAAAGATCAATGCCCTG
CAGCAGTTTGTAATAATTGTACTTTTTTTTGCCCTATCTGGCGTATCGCC
CCATCACTAGAATGGGGGTAAATACGTCACACCTTGTCATCGGCTGCGGT
CAGCGATTGCGCTTCTCTTACGTTTACCACTCTGGGCCAGACTTGGACTC
TCTATGTATAGTCCAGGCCCCAAATCAGGTTCTCGAAATATCCACATGGA
CCCCGATCGTCGTATTGGGTTTTCATTGGCGACGAGGCTGCGCCGCTCTG
CGCTCAATATGGTCAGGCTGGGACGGCCGTCATTGCGTACACATTGATCA
CTGAAACTTCTGCTTCCCTCTCAGACTCAAGGAAGACACAACCAGACTCA
TGGAAGACATATCCATGAATTTCAATCTGGTGGATTTCATTGATGGGGAT
TGGTCCCAGGAACTGGTTTCTCCAACGAGCCTTGATCCGGGTTGTGACAA
AGTGATACTGAGCAACAACGATATTACGGACATCCTAGCTCTGGAGGAAG
TGGACAATCTTCCCCAAGGACGTCAGGGCTTTAAAGACACACAGGATGCC
ATCTCAAAGAGCCCGGCCCAAGCCCAAAATGGCGCTTCCGAGGCTCAACT
GTGTCCCGTCTGCCAGAGGCCCACGGGCACCCATGCCTACTACGGAGTGC
GAGTGTGCGTCAGTTGCCGAGGCTTCTTCCGGAGAACCGTTCAAAATGAG
CACAATGTGCTTTTTCGTTGCTTGCAAGACCAAATGTGTACCATTGATTC
GACCTCGCGACGAAGCTGCAAATACTGCCGATACAAGCAATGCCTCCAGG
CGGGAATGAAGCCCCAATTGGTCATGTCCAGTGCGGATAGAAAGAAAAGG
ATCCTGCAGAAATACCAGAACAACGAGGGGCCGTTGAACTGCGATGCTAA
TCTCACTCATGTCAGGCGAGCATTCGGATTGACCACGATCTTCACCACGG
AAGACGAACTGGAAGTGGGCCAAGAATTCAAAGTTTTCTTGGAGTTCTCT
CACGAAGCGTACATCAACCATTTTTCCGAGCATTTGGACGTATTTGGGGA
GCTCATTCGTTGTGCTTACCTGGGCTGCATTTATCCCGTACATTTAATGC
GGTCCATGGATCATCTGGACGAAGCCACGACCGCCAACTACTTATTCTTG
TGGGTGGAAATGCGGGACTTAAGTCCCTTCGACCGGATGACTCTTTTCCA
GAACAACTACCCTCTCATCTATGGACTGTTGTGGGGCACATTCAGCAAAA
GTATGGCTTTTTTTTACTACTTTCAAGACTTGATGCAATTTGCTCGGGAG
CGCAAGAGTAAAAACCCTAAAGCCCAAAAGCTCGTGGCTATGGGACAGGG
CGAGCACTGTGTGTATAAACGACTGGTTCCCACACAGGACCAATGTTTGT
ACATGAGCTATTCCCAGAATACTGATGGCTCCCACCTGTCGCTTGTGGAA
GAAGTAGAAAGGGTCAATGCCATCTTTCAGGACTCTCGGACTGGCCGTGT
GGATTGTGTACTCGTGGTCTTATTTTTTCGGACAGCTCTTCTGCTCACTC
GATTTAATGCCCACCTGGAGCAACGGTCGACAATTGAGAAACTCCAAACT
CACTACAATAATAAGCTGCTGCGATACATCCAGCAAAGGTATCCTGACAA
AAATATATGTCCTGAGGCAGTGTTCAGTCAGATGAGATCAGTTTATAAAA
TCATGCAATCGGCATTCTTTCCGGAGAGGGAGCTCAAATATTTGGTCTGA
AATACAATATACCAATCAATCAAAGTTATTTCATTCGCCTCTCACTAAGG
CTGTAATTAGCCATGGTCACCAAGTGCTCTTATCCCTAAATTGCGAAAAA
GGTGTCGTTGTCCATTTCTTATCTTACCACTTGGGAGAAGAGTGACTCCA
GGTTGGCTTACTCTCGTTTTTTCATTAGAGTGCTTGAAGAAGGTTTTCTG
ATATTCTCTAGGGTATACCCAAACTTTGCAAGGCATGGCCCTCGAAAAGA
TGTAAAATGCAAAAAAAAGCGACTAGGCTGCGCAGTGCTGTTATTTTAGC
TAATGACTCGATTACTGTCGGAGCCAAGATGTGAGAGCTAAACTTCACCG
GACAAAACTCGATGATTAATGGATGCTCAACAGTATGAAGCTTGAATGAA
CGGATGAAAATGATATTCATGATTGCAGGATGTGCCCAAATGGAGATCAT
CGATCTGGCGTTCAACCGAGACCAATATTTGCTGGGATTGTCTGGTATTC
CAGATTTCAAAATCATCCTCTGGGATTGGAAATCGAATACCCTTCTCTTT
AGCCAGGCCATTGTTGGGTCTCACGTAAGTGCATCCCGTGGTCATCGGAA
TATTCCTACATGGCACATTTCAAGTGCTCCCTTACCGGTGATCTAAAGTG
AGACCATTTTTAGGGTCCTCGAACTCGGGTCAGTTTCAGCGCAGGCGTGA
CCAAGGGTTCATCCACTACAGTCCTTTTGAGCCACGCGGAGACCCATTCA
TTGAGTGTTTGGAAAATCAAACGGATTGGAGCCGAGCAATCCATCTTCAA
ACATGTGACCACCAACCCAGATGTTGAGCATTTGTTAAGCCACGTTGTGG
CCTTTTGTTGGCACCACTTGGATCGTCTGATCATCCTCAACAGAGATGGA
GACATTATCGAGGTACGCAATGCGTCCCCGATGCACTTTTGACTGGGAAT
ACACCTTAGGCACTTGCCCAATTGATCCCGCTTTAGGCGAATTAACCCAT
GCCGTTTGGCTCCTTCTGCAGTATGATGTGTTCAAGAACAAACTCAAAAC
GCTCCCTTTGAATGGAGTAGCACTAACTGGATTGGTCTCAGAGAATGATC
CCCAAAAGATTCGACTATTTCCCCACTTCCAAGGTCTGATCGTGTTCAAG
GAACAACGAGTGTGTGTAAGTGATTCGTTCAGCAATTGTGTGCTGAGTTA
CGTCTGTACAGGCTAGCGAGGTACAACAACCACCCAATCATAACACCCCA
TTTGGGGGTTGCTTTTGCACAACAGAGCCTGCGATCAAGCGGTGGAGGTT
TGACTCTCCATTTGGAGCATTCTCTGCCTGAACCGTGTGGCAACCTGAAC
TTGGTTCAGGAGATGTCCACCAATTGCTCGTTTGTGGCCATTTCGGAAAA
GGTAAGTGAGCGGGACGAACCTGGGACGGTGCTTCCTCGGAGTTTACCTA
CTATTTTGTATTCTTCACCAGGCCAACTTCATTCTGGTGCAAACATCCGA
GTCCAATATTTCGAGCCAAATTGTGGCTTCAGGACCACTTCACTTTTGTC
TCTTCACGCAGGCCGCATTTCTCAGTCCCAACTTGGAGCATCTCATCACT
ATCGATACCAACAAGATCTTTCGATGCCACTCGATGGGCACGAGAAGCTT
GGTTAGTTTGGCAAATTCAATCGATACCATTTAGTCAAGGAGCCTCAAGG
CCAGTCTGTCGTGCACCCATATGGTAATCAAATGTTCACCTCGGCTTTTT
TCAGATCTTTGAGCACACCCTGCCCTCGAGGTCTTCATTACTGTGCCAAG
GAGCTCCCTCAGAACTTTTTATTATGGACCAAAATGGTGGAGTGTGCCAT
TTTTCAATGTTGGTCCACGAGAGAGGCCAAACTAGGGGTGCGATTCAATC
CATTCAACCAATCAACGAGAATGGAGTCGATCTCGCGGCCCACAACCAAA
GCGACCAGACTCGAGCCGTTTTAGCCAATTGCAGCGACGGGCAACTATTC
CTGGTCCAATTTCACCCGCAGCATCCGTATCTCGAGGTCAAAGCGCATCT
AGAAATTGGCCATAAATTATGCGACCTCTCCTTCCGGAGCAACACGTTAG
TGGCTTTGATCGGATGTAAAGGCCACTGGGCTAAGCATGTGGCTCTAATT
CAAGTCGAATTCGACGAGCTTGTCCTCAAGAATGTGGTGGCTGGTTCGAG
CCTAATCTCGGGATCCTGTTTGGATGAAGGTGAAACGAGCTTTTTCTCCA
TTTCTCGGACTGAACCTCCGGAGATGGTCAAAGTGTCAATGGAGCATGGA
ACAATAAGTATCATAGTAAGTTCTGGTTGAAAAATACCCGGTCCATTTGT
AAGCCAAGTGTCTGTGGGAATTCCAAGTCTGACTCTTAGCATGAGCAATT
CACGAGCCATTTTATAAACTAGTCATTTATTTTTATCGCACCTACGTTTT
TCCACTCCGCTAAGGTGGAGCAAACAAACGTGGGATCGATTCGGTGTCCT
ATGGGCGTAACTCGTTTCATGCTTACAATATGGTTTTTGAGTTAATTTCA
GTCCCAGCATGATATGCTTAATGTTAAACTGATATTTGGGGACCCAAACC
ATTAACGCAGATCCACCACGATGGCTAGAGAGATCGATTCTCAAATCAAT
ATTTTCTTCTGGTCATATAGCCTGAAACTGATCCAAGTCCCACTAATCCC
ACTAATCGTCAACAAGATCAGCAGAGTCCAGCCCGTGGAATTGAACTAAT
TGGCACTTCCCTCATTGTGTTTGGTTTGAACGGGATGGTCAGCTTCTACA
ACTATTTCGAAGGCCAGCTCTCCCTGGAACGGAAGTTATGCCTTTTTTCT
AATTTGGAGAGTATCGTGACATTTCACCATGTGCCAAGTCCCAACCTCAT
TTGCGGCATCAACAGCTTGGGCGGTTTGCACGTTCTTCAACTTATCTCGG
GGTCGGAGGGCTCTGCGGATATTGAGGCTGGGACCCTCAATATTTCGGAG
TCACCTCTGTCGTTCCAACCATCTCGTTTAGCGGAGCTGCAAGCACAAGC
TTTGGAAAAGACACAAATGCCTCACCGAGACACTCTTCATGACATCTCCT
CCGGACTGCAAGGGATTAAGGAGCAAGTGGAAATCTTACTGAGGGAAAAC
GAAGCTCTTCCCCCCGCCAATCAAGTGGATAGACATGACTTTGAGTTGGA
TCTAGAGGAGAAGCAAGCGATTGAACATAAAGGGTTCGAGCAGGAACATG
AGCTTCAACTCGAGTTACAAGCCCATTGTATTGCCCGAAGCCAGATCAAG
GGACGCATCAGGCTTCAAATTTGGGATCCAATGGAAGTCAAGGGCAAAAC
CATCGAGGCGAGTTGA

Synonyms

The feature 'achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promoter' has the following synonyms


Synonym
Tk04580

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