nuclear hormone receptor, snap_masked-scaffold58_size443543-processed-gene-3.1 (gene) Tigriopus kingsejongensis

Overview
Namenuclear hormone receptor
Unique Namesnap_masked-scaffold58_size443543-processed-gene-3.1
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19")

HSP 1 Score: 57.7658 bits (138), Expect = 7.600e-12
Identity = 25/63 (39.68%), Postives = 33/63 (52.38%), Query Frame = 0 
Query:   14 GDRRHYGAISCEGCKGFFKRSIRKQLGYQ---CRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 73
            G   +YG   C  C+ FF+RS++     Q   C   KDC +    R  CQ CR QKC++ GMR
Sbjct:  115 GKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMR 177
[Close]
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22")

HSP 1 Score: 57.7658 bits (138), Expect = 8.215e-12
Identity = 24/64 (37.50%), Postives = 34/64 (53.12%), Query Frame = 0 
Query:   14 GDRRHYGAISCEGCKGFFKRSIRKQLGYQ---CRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRS 74
            G   +YG   C  C+ FF+RS++     Q   C   +DC +    R  CQ CR QKC++ GMR+
Sbjct:  114 GKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRA 177
[Close]
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4")

HSP 1 Score: 52.373 bits (124), Expect = 3.287e-10
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 0 
Query:   18 HYGAISCEGCKGFFKRSIRK---QLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGM 72
            H+GA +CEGCK FF R+  K       +C+ N  C + K +R  C+ CRL+KCL +GM
Sbjct:   49 HFGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGM 106
[Close]
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000012965 (supercontig:LSalAtl2s:LSalAtl2s98:1224628:1226761:1 gene:EMLSAG00000012965 transcript:EMLSAT00000012965 description:"snap_masked-LSalAtl2s98-processed-gene-12.8")

HSP 1 Score: 50.447 bits (119), Expect = 3.116e-9
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 0 
Query:   46 NKDCEVTKHHRNRCQYCRLQKCLAMGMRS 74
            NK+C VTKH R  CQYCR  KCL++GM+S
Sbjct:   27 NKNCVVTKHTRKHCQYCRFVKCLSVGMKS 55
[Close]
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000007233 (supercontig:LSalAtl2s:LSalAtl2s405:178614:197434:1 gene:EMLSAG00000007233 transcript:EMLSAT00000007233 description:"maker-LSalAtl2s405-snap-gene-2.21")

HSP 1 Score: 49.2914 bits (116), Expect = 6.829e-9
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0 
Query:   38 QLGYQCR-GNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            +L Y+C+ G   C + K HRN+CQ CRL+KCL MGM  D
Sbjct:   60 KLIYRCQAGTGMCVIDKAHRNQCQACRLRKCLHMGMNKD 98
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|73620966|sp|Q24142.2|HR78_DROME (RecName: Full=Nuclear hormone receptor HR78; Short=dHR78; AltName: Full=Nuclear receptor XR78E/F; AltName: Full=Nuclear receptor subfamily 2 group D member 1)

HSP 1 Score: 132.88 bits (333), Expect = 5.719e-37
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L L  GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG  +CEVTKHHRNRCQ+CRLQKCLA GMRSD
Sbjct:   51 LCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHHRNRCQFCRLQKCLASGMRSD 120
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|68566021|sp|Q26622.1|SHR2_STRPU (RecName: Full=Orphan steroid hormone receptor 2; AltName: Full=SpSHR2)

HSP 1 Score: 127.102 bits (318), Expect = 6.446e-35
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            GD+   RHYGAISCEGCKGFFKRSIRK LGY CRGNKDC++ KH+RNRCQYCRLQKCL MGM+SD
Sbjct:   91 GDKASGRHYGAISCEGCKGFFKRSIRKHLGYTCRGNKDCQIIKHNRNRCQYCRLQKCLDMGMKSD 155
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|57015416|sp|Q9N4B8.4|NHR41_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-41)

HSP 1 Score: 121.709 bits (304), Expect = 6.539e-33
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA+SCEGCKGFFKRSIRK++GY CR  KDC VTK HRNRCQYCRL+KCL+MGMRS+
Sbjct:  151 LCVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGYVCRSQKDCPVTKFHRNRCQYCRLRKCLSMGMRSE 220
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|341942228|sp|Q505F1.3|NR2C1_MOUSE (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2; Short=mTR2)

HSP 1 Score: 117.472 bits (293), Expect = 1.921e-31
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGAI+CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D
Sbjct:  100 LCVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKDCVINKHHRNRCQYCRLQRCIAFGMKQD 169
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|75066579|sp|Q95K90.1|NR2C1_MACFA (RecName: Full=Nuclear receptor subfamily 2 group C member 1)

HSP 1 Score: 116.701 bits (291), Expect = 3.103e-31
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D
Sbjct:  112 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 181
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|81902145|sp|Q8VIJ4.1|NR2C1_RAT (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2)

HSP 1 Score: 116.701 bits (291), Expect = 3.286e-31
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGAI+CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D
Sbjct:  100 LCVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 169
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|226693548|sp|P13056.2|NR2C1_HUMAN (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2)

HSP 1 Score: 116.701 bits (291), Expect = 3.392e-31
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D
Sbjct:  112 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 181
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|75061946|sp|Q5RCZ5.1|NR2C1_PONAB (RecName: Full=Nuclear receptor subfamily 2 group C member 1)

HSP 1 Score: 116.316 bits (290), Expect = 4.193e-31
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D
Sbjct:  113 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 182
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|123892381|sp|Q28CK1.1|NR2C1_XENTR (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Developmental orphan receptor 2; Short=DOR2; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2)

HSP 1 Score: 115.931 bits (289), Expect = 7.556e-31
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KH+RNRCQYCRLQ+C+A+GM+ D
Sbjct:  151 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKDCVINKHYRNRCQYCRLQRCIALGMKQD 220
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|82201033|sp|Q6GN21.1|N2C1A_XENLA (RecName: Full=Nuclear receptor subfamily 2 group C member 1-A; AltName: Full=Developmental orphan receptor 2-A; Short=DOR2-A; Short=xDOR2-A; AltName: Full=Orphan nuclear receptor TR2-A; AltName: Full=Testicular receptor 2-A)

HSP 1 Score: 115.546 bits (288), Expect = 8.949e-31
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KH+RNRCQYCRLQ+C+++GM+ D
Sbjct:  151 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKDCVINKHYRNRCQYCRLQRCMSLGMKQD 220
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|657600370|gb|AID52846.1| (hormone receptor 78 [Tigriopus japonicus])

HSP 1 Score: 145.206 bits (365), Expect = 8.935e-39
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD
Sbjct:  231 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 295
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|1238856880|ref|XP_022245333.1| (nuclear receptor subfamily 2 group C member 2-like isoform X3 [Limulus polyphemus])

HSP 1 Score: 141.354 bits (355), Expect = 1.402e-37
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    2 PAWILSCLSLTRGDRRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDCK 77
            P + L  +   +   RHYGAISCEGCKGFFKRSIRKQLGY CRGN+DCEVTKHHRNRCQYCRLQKCLAMGMR+DCK
Sbjct:  140 PPFELCVVCGDKASGRHYGAISCEGCKGFFKRSIRKQLGYACRGNRDCEVTKHHRNRCQYCRLQKCLAMGMRADCK 215
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|1238856870|ref|XP_022245327.1| (nuclear receptor subfamily 2 group C member 2-like isoform X1 [Limulus polyphemus] >gi|1238856872|ref|XP_022245329.1| nuclear receptor subfamily 2 group C member 2-like isoform X1 [Limulus polyphemus] >gi|1238856874|ref|XP_022245330.1| nuclear receptor subfamily 2 group C member 2-like isoform X1 [Limulus polyphemus] >gi|1238856876|ref|XP_022245331.1| nuclear receptor subfamily 2 group C member 2-like isoform X1 [Limulus polyphemus])

HSP 1 Score: 140.584 bits (353), Expect = 2.578e-37
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    2 PAWILSCLSLTRGDRRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDCK 77
            P + L  +   +   RHYGAISCEGCKGFFKRSIRKQLGY CRGN+DCEVTKHHRNRCQYCRLQKCLAMGMR+DCK
Sbjct:  140 PPFELCVVCGDKASGRHYGAISCEGCKGFFKRSIRKQLGYACRGNRDCEVTKHHRNRCQYCRLQKCLAMGMRADCK 215
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|668462065|gb|KFB49569.1| (hypothetical protein ZHAS_00017577 [Anopheles sinensis])

HSP 1 Score: 140.584 bits (353), Expect = 4.808e-37
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDCK 77
            L L  GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG+ +CEVTKHHRNRCQYCRLQKCLA GMRSDCK
Sbjct:   49 LCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSMNCEVTKHHRNRCQYCRLQKCLACGMRSDCK 120
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|805816150|ref|XP_012148686.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X1 [Megachile rotundata])

HSP 1 Score: 138.658 bits (348), Expect = 9.705e-37
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDC 76
            GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSDC
Sbjct:  192 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSDC 257
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|646712422|gb|KDR17183.1| (Nuclear receptor subfamily 2 group C member 2, partial [Zootermopsis nevadensis])

HSP 1 Score: 137.117 bits (344), Expect = 1.370e-36
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0 
Query:   17 RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            RHYGAISCEGCKGFFKRSIRKQLGYQCRGNK CEVTKHHRNRCQYCRLQKCLAMGMRSD
Sbjct:    3 RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKSCEVTKHHRNRCQYCRLQKCLAMGMRSD 61
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|805816166|ref|XP_012148692.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X4 [Megachile rotundata])

HSP 1 Score: 137.887 bits (346), Expect = 1.454e-36
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDC 76
            GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSDC
Sbjct:  133 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSDC 198
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|805816156|ref|XP_012148689.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X3 [Megachile rotundata] >gi|805816160|ref|XP_012148690.1| PREDICTED: orphan steroid hormone receptor 2 isoform X3 [Megachile rotundata] >gi|805816163|ref|XP_012148691.1| PREDICTED: orphan steroid hormone receptor 2 isoform X3 [Megachile rotundata])

HSP 1 Score: 137.887 bits (346), Expect = 1.734e-36
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDC 76
            GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSDC
Sbjct:  156 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSDC 221
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|1061483032|gb|ODN00279.1| (Nuclear receptor subfamily 2 group C member 2 [Orchesella cincta])

HSP 1 Score: 135.961 bits (341), Expect = 2.437e-36
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            GDR   RHYGAISCEGCKGFFKRSIRK+LGY CRGNK+CEVTKHHRNRCQYCRLQKCL MGMRSD
Sbjct:   39 GDRASGRHYGAISCEGCKGFFKRSIRKKLGYSCRGNKNCEVTKHHRNRCQYCRLQKCLQMGMRSD 103
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|805816169|ref|XP_012148693.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X5 [Megachile rotundata] >gi|805816172|ref|XP_012148694.1| PREDICTED: orphan steroid hormone receptor 2 isoform X5 [Megachile rotundata])

HSP 1 Score: 136.346 bits (342), Expect = 2.778e-36
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDC 76
            GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSDC
Sbjct:   97 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSDC 162
The following BLAST results are available for this feature:
BLAST of nuclear hormone receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25
Match NameE-valueIdentityDescription
EMLSAG000000102677.600e-1239.68supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1... [more]
EMLSAG000000119078.215e-1237.50supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1... [more]
EMLSAG000000056203.287e-1044.83supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1... [more]
EMLSAG000000129653.116e-965.52supercontig:LSalAtl2s:LSalAtl2s98:1224628:1226761:... [more]
EMLSAG000000072336.829e-953.85supercontig:LSalAtl2s:LSalAtl2s405:178614:197434:1... [more]

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BLAST of nuclear hormone receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|73620966|sp|Q24142.2|HR78_DROME5.719e-3784.29RecName: Full=Nuclear hormone receptor HR78; Short... [more]
gi|68566021|sp|Q26622.1|SHR2_STRPU6.446e-3581.54RecName: Full=Orphan steroid hormone receptor 2; A... [more]
gi|57015416|sp|Q9N4B8.4|NHR41_CAEEL6.539e-3372.86RecName: Full=Nuclear hormone receptor family memb... [more]
gi|341942228|sp|Q505F1.3|NR2C1_MOUSE1.921e-3170.00RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|75066579|sp|Q95K90.1|NR2C1_MACFA3.103e-3168.57RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|81902145|sp|Q8VIJ4.1|NR2C1_RAT3.286e-3170.00RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|226693548|sp|P13056.2|NR2C1_HUMAN3.392e-3168.57RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|75061946|sp|Q5RCZ5.1|NR2C1_PONAB4.193e-3168.57RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|123892381|sp|Q28CK1.1|NR2C1_XENTR7.556e-3167.14RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|82201033|sp|Q6GN21.1|N2C1A_XENLA8.949e-3165.71RecName: Full=Nuclear receptor subfamily 2 group C... [more]

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BLAST of nuclear hormone receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|657600370|gb|AID52846.1|8.935e-3995.38hormone receptor 78 [Tigriopus japonicus][more]
gi|1238856880|ref|XP_022245333.1|1.402e-3778.95nuclear receptor subfamily 2 group C member 2-like... [more]
gi|1238856870|ref|XP_022245327.1|2.578e-3778.95nuclear receptor subfamily 2 group C member 2-like... [more]
gi|668462065|gb|KFB49569.1|4.808e-3786.11hypothetical protein ZHAS_00017577 [Anopheles sine... [more]
gi|805816150|ref|XP_012148686.1|9.705e-3792.42PREDICTED: orphan steroid hormone receptor 2 isofo... [more]
gi|646712422|gb|KDR17183.1|1.370e-3698.31Nuclear receptor subfamily 2 group C member 2, par... [more]
gi|805816166|ref|XP_012148692.1|1.454e-3692.42PREDICTED: orphan steroid hormone receptor 2 isofo... [more]
gi|805816156|ref|XP_012148689.1|1.734e-3692.42PREDICTED: orphan steroid hormone receptor 2 isofo... [more]
gi|1061483032|gb|ODN00279.1|2.437e-3689.23Nuclear receptor subfamily 2 group C member 2 [Orc... [more]
gi|805816169|ref|XP_012148693.1|2.778e-3692.42PREDICTED: orphan steroid hormone receptor 2 isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold58_size443543supercontigscaffold58_size443543:330609..331203 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:steroid hormone mediated signaling pathway
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold58_size443543-processed-gene-3.1-mRNA-1snap_masked-scaffold58_size443543-processed-gene-3.1-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold58_size443543:330609..331203+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold58_size443543-processed-gene-3.1 ID=snap_masked-scaffold58_size443543-processed-gene-3.1|Name=nuclear hormone receptor|organism=Tigriopus kingsejongensis|type=gene|length=595bp|location=Sequence derived from alignment at scaffold58_size443543:330609..331203+ (Tigriopus kingsejongensis)
ATGCCGGCCTGGATTCTCTCTTGCCTCTCCCTGACCCGAGGAGATCGTGA
CCAAGGGTGCCCTCCGATTATTCAAAGTAGTCAAACAGATTTTGAAATTG
GCTCCCGACTGGGCGTGACCCCCTGAACCTGGGCTTTTCTCCTCTGGAAA
TTGGGGTTGACCTCTGTGCAGGTCAGAATCTGGGGGCCTTCTCCGCTCGT
CATATCATTAGTGATTAAGTGATCAGGGATGCTAAAGAGTTGGAGAAAAC
AACGGCTTTTAATGCGCTTCGTGAGCGCCATTAGGCGATGATGATTAAGA
TATCCGAGTCAGCAGAGCCCTCACACCCATGATTATCCAGGCCCAACGTG
GCCGCCGAATCTCACGCGATGAACATCTCGATCATCTCTTTCCCTTCTTT
CCAGGCCGACATTATGGTGCAATCAGTTGCGAAGGCTGCAAAGGCTTCTT
CAAACGCTCAATCCGCAAACAGCTCGGCTATCAATGCCGAGGCAACAAGG
ACTGTGAGGTGACCAAGCATCATCGGAACCGATGTCAGTACTGCCGACTC
CAGAAGTGTCTGGCCATGGGCATGCGCAGTGATTGTAAGTATTAA
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Synonyms
The feature 'nuclear hormone receptor' has the following synonyms
Synonym
Tk00704
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