nuclear hormone receptor, snap_masked-scaffold58_size443543-processed-gene-3.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 57.7658 bits (138), Expect = 7.600e-12 Identity = 25/63 (39.68%), Postives = 33/63 (52.38%), Query Frame = 0 Query: 14 GDRRHYGAISCEGCKGFFKRSIRKQLGYQ---CRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 73 G +YG C C+ FF+RS++ Q C KDC + R CQ CR QKC++ GMR Sbjct: 115 GKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMR 177
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 57.7658 bits (138), Expect = 8.215e-12 Identity = 24/64 (37.50%), Postives = 34/64 (53.12%), Query Frame = 0 Query: 14 GDRRHYGAISCEGCKGFFKRSIRKQLGYQ---CRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRS 74 G +YG C C+ FF+RS++ Q C +DC + R CQ CR QKC++ GMR+ Sbjct: 114 GKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRA 177
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4") HSP 1 Score: 52.373 bits (124), Expect = 3.287e-10 Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 0 Query: 18 HYGAISCEGCKGFFKRSIRK---QLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGM 72 H+GA +CEGCK FF R+ K +C+ N C + K +R C+ CRL+KCL +GM Sbjct: 49 HFGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGM 106
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000012965 (supercontig:LSalAtl2s:LSalAtl2s98:1224628:1226761:1 gene:EMLSAG00000012965 transcript:EMLSAT00000012965 description:"snap_masked-LSalAtl2s98-processed-gene-12.8") HSP 1 Score: 50.447 bits (119), Expect = 3.116e-9 Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 0 Query: 46 NKDCEVTKHHRNRCQYCRLQKCLAMGMRS 74 NK+C VTKH R CQYCR KCL++GM+S Sbjct: 27 NKNCVVTKHTRKHCQYCRFVKCLSVGMKS 55
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000007233 (supercontig:LSalAtl2s:LSalAtl2s405:178614:197434:1 gene:EMLSAG00000007233 transcript:EMLSAT00000007233 description:"maker-LSalAtl2s405-snap-gene-2.21") HSP 1 Score: 49.2914 bits (116), Expect = 6.829e-9 Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0 Query: 38 QLGYQCR-GNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 +L Y+C+ G C + K HRN+CQ CRL+KCL MGM D Sbjct: 60 KLIYRCQAGTGMCVIDKAHRNQCQACRLRKCLHMGMNKD 98
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|73620966|sp|Q24142.2|HR78_DROME (RecName: Full=Nuclear hormone receptor HR78; Short=dHR78; AltName: Full=Nuclear receptor XR78E/F; AltName: Full=Nuclear receptor subfamily 2 group D member 1) HSP 1 Score: 132.88 bits (333), Expect = 5.719e-37 Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L L GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG +CEVTKHHRNRCQ+CRLQKCLA GMRSD Sbjct: 51 LCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHHRNRCQFCRLQKCLASGMRSD 120
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|68566021|sp|Q26622.1|SHR2_STRPU (RecName: Full=Orphan steroid hormone receptor 2; AltName: Full=SpSHR2) HSP 1 Score: 127.102 bits (318), Expect = 6.446e-35 Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GD+ RHYGAISCEGCKGFFKRSIRK LGY CRGNKDC++ KH+RNRCQYCRLQKCL MGM+SD Sbjct: 91 GDKASGRHYGAISCEGCKGFFKRSIRKHLGYTCRGNKDCQIIKHNRNRCQYCRLQKCLDMGMKSD 155
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|57015416|sp|Q9N4B8.4|NHR41_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-41) HSP 1 Score: 121.709 bits (304), Expect = 6.539e-33 Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GD+ RHYGA+SCEGCKGFFKRSIRK++GY CR KDC VTK HRNRCQYCRL+KCL+MGMRS+ Sbjct: 151 LCVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGYVCRSQKDCPVTKFHRNRCQYCRLRKCLSMGMRSE 220
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|341942228|sp|Q505F1.3|NR2C1_MOUSE (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2; Short=mTR2) HSP 1 Score: 117.472 bits (293), Expect = 1.921e-31 Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GD+ RHYGAI+CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D Sbjct: 100 LCVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKDCVINKHHRNRCQYCRLQRCIAFGMKQD 169
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|75066579|sp|Q95K90.1|NR2C1_MACFA (RecName: Full=Nuclear receptor subfamily 2 group C member 1) HSP 1 Score: 116.701 bits (291), Expect = 3.103e-31 Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GD+ RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D Sbjct: 112 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 181
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|81902145|sp|Q8VIJ4.1|NR2C1_RAT (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2) HSP 1 Score: 116.701 bits (291), Expect = 3.286e-31 Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GD+ RHYGAI+CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D Sbjct: 100 LCVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 169
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|226693548|sp|P13056.2|NR2C1_HUMAN (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2) HSP 1 Score: 116.701 bits (291), Expect = 3.392e-31 Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GD+ RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D Sbjct: 112 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 181
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|75061946|sp|Q5RCZ5.1|NR2C1_PONAB (RecName: Full=Nuclear receptor subfamily 2 group C member 1) HSP 1 Score: 116.316 bits (290), Expect = 4.193e-31 Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GD+ RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D Sbjct: 113 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 182
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|123892381|sp|Q28CK1.1|NR2C1_XENTR (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Developmental orphan receptor 2; Short=DOR2; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2) HSP 1 Score: 115.931 bits (289), Expect = 7.556e-31 Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GD+ RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KH+RNRCQYCRLQ+C+A+GM+ D Sbjct: 151 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKDCVINKHYRNRCQYCRLQRCIALGMKQD 220
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|82201033|sp|Q6GN21.1|N2C1A_XENLA (RecName: Full=Nuclear receptor subfamily 2 group C member 1-A; AltName: Full=Developmental orphan receptor 2-A; Short=DOR2-A; Short=xDOR2-A; AltName: Full=Orphan nuclear receptor TR2-A; AltName: Full=Testicular receptor 2-A) HSP 1 Score: 115.546 bits (288), Expect = 8.949e-31 Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GD+ RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KH+RNRCQYCRLQ+C+++GM+ D Sbjct: 151 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKDCVINKHYRNRCQYCRLQRCMSLGMKQD 220
BLAST of nuclear hormone receptor vs. nr
Match: gi|951536144|ref|XP_014471525.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X3 [Dinoponera quadriceps]) HSP 1 Score: 135.191 bits (339), Expect = 1.149e-35 Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 129 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSD 193
BLAST of nuclear hormone receptor vs. nr
Match: gi|1316138863|ref|XP_023211818.1| (nuclear receptor subfamily 2 group C member 1-A-like [Centruroides sculpturatus]) HSP 1 Score: 135.961 bits (341), Expect = 1.184e-35 Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GD+ RHYGAISCEGCKGFFKRSIRKQLGY CRGN+DCEVTKHHRNRCQYCRLQKCL+MGMR+D Sbjct: 128 LCVVCGDKASGRHYGAISCEGCKGFFKRSIRKQLGYACRGNRDCEVTKHHRNRCQYCRLQKCLSMGMRAD 197
BLAST of nuclear hormone receptor vs. nr
Match: gi|1070176762|ref|XP_018347783.1| (PREDICTED: nuclear receptor subfamily 2 group C member 1-like isoform X9 [Trachymyrmex septentrionalis] >gi|1070208320|ref|XP_018373202.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform X4 [Trachymyrmex cornetzi] >gi|1070208322|ref|XP_018373203.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform X4 [Trachymyrmex cornetzi] >gi|1070208324|ref|XP_018373204.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform X4 [Trachymyrmex cornetzi]) HSP 1 Score: 135.191 bits (339), Expect = 1.196e-35 Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 108 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSD 172
BLAST of nuclear hormone receptor vs. nr
Match: gi|749747361|ref|XP_011135801.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X6 [Harpegnathos saltator]) HSP 1 Score: 135.576 bits (340), Expect = 1.224e-35 Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K+CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 151 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKNCEVTKHHRNRCQYCRLQKCLAMGMRSD 215
BLAST of nuclear hormone receptor vs. nr
Match: gi|1238856878|ref|XP_022245332.1| (nuclear receptor subfamily 2 group C member 2-like isoform X2 [Limulus polyphemus]) HSP 1 Score: 135.961 bits (341), Expect = 1.274e-35 Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0 Query: 2 PAWILSCLSLTRGDRRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 P + L + + RHYGAISCEGCKGFFKRSIRKQLGY CRGN+DCEVTKHHRNRCQYCRLQKCLAMGMR+D Sbjct: 140 PPFELCVVCGDKASGRHYGAISCEGCKGFFKRSIRKQLGYACRGNRDCEVTKHHRNRCQYCRLQKCLAMGMRAD 213 The following BLAST results are available for this feature:
BLAST of nuclear hormone receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of nuclear hormone receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of nuclear hormone receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold58_size443543:330609..331203+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold58_size443543-processed-gene-3.1 ID=snap_masked-scaffold58_size443543-processed-gene-3.1|Name=nuclear hormone receptor|organism=Tigriopus kingsejongensis|type=gene|length=595bp|location=Sequence derived from alignment at scaffold58_size443543:330609..331203+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'nuclear hormone receptor' has the following synonyms
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